RNA–Protein interactions for RNA: ENST00000482399.5

VPS52-218, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2 BASIC

Gene VPS52, Length 3,338 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-218ENST00000482399 FAM9BQ8IZU0 186 aa17.74■□□□□ 0.43
VPS52-218ENST00000482399 KIF27Q86VH2 1401 aa17.71■□□□□ 0.43
VPS52-218ENST00000482399 ARAP1Q96P48 1450 aa17.71■□□□□ 0.43
VPS52-218ENST00000482399 ATAD2BQ9ULI0 1458 aa17.68■□□□□ 0.42
VPS52-218ENST00000482399 SETD5Q9C0A6 1442 aa17.66■□□□□ 0.42
VPS52-218ENST00000482399 RRP7BPQ9NSQ0 103 aa17.64■□□□□ 0.41
VPS52-218ENST00000482399 ZNF326Q5BKZ1 582 aaKnown RBP17.64■□□□□ 0.41
VPS52-218ENST00000482399 PPP1R15AO75807 674 aaPredicted RBP17.62■□□□□ 0.41
VPS52-218ENST00000482399 NBR1Q14596 966 aa17.59■□□□□ 0.41
VPS52-218ENST00000482399 B4GALNT3Q6L9W6 998 aa17.58■□□□□ 0.41
VPS52-218ENST00000482399 CUX2O14529 1486 aa17.58■□□□□ 0.4
VPS52-218ENST00000482399 PHLDB1Q86UU1 1377 aa17.56■□□□□ 0.4
VPS52-218ENST00000482399 MRS2Q9HD23 443 aa17.55■□□□□ 0.4
VPS52-218ENST00000482399 RRBP1Q9P2E9 1410 aaKnown RBP17.55■□□□□ 0.4
VPS52-218ENST00000482399 CARMIL1Q5VZK9 1371 aa17.54■□□□□ 0.4
VPS52-218ENST00000482399 CCER2I3L3R5 266 aa17.53■□□□□ 0.4
VPS52-218ENST00000482399 FOXD1Q16676 465 aa17.53■□□□□ 0.4
VPS52-218ENST00000482399 MTUS2Q5JR59 1369 aa17.53■□□□□ 0.4
VPS52-218ENST00000482399 ARHGAP35Q9NRY4 1499 aa17.52■□□□□ 0.39
VPS52-218ENST00000482399 WDR97A6NE52 1622 aa17.52■□□□□ 0.39
VPS52-218ENST00000482399 PRXQ9BXM0 1461 aa17.51■□□□□ 0.39
VPS52-218ENST00000482399 SALL2Q9Y467 1007 aaPredicted RBP17.48■□□□□ 0.39
VPS52-218ENST00000482399 HSPA5P11021 654 aaKnown RBP17.47■□□□□ 0.39
VPS52-218ENST00000482399 FHOD3Q2V2M9 1422 aa17.46■□□□□ 0.39
VPS52-218ENST00000482399 MSH5O43196 834 aa17.45■□□□□ 0.38
VPS52-218ENST00000482399 EIF4G2P78344 907 aaKnown RBP eCLIP17.45■□□□□ 0.381e-12■■■■□ 25
VPS52-218ENST00000482399 PRKCSHP14314 528 aaPredicted RBP17.44■□□□□ 0.38
VPS52-218ENST00000482399 NPM2Q86SE8 214 aaKnown RBP17.44■□□□□ 0.38
VPS52-218ENST00000482399 IGF1RP08069 1367 aa17.43■□□□□ 0.38
VPS52-218ENST00000482399 CCDC184Q52MB2 194 aa17.41■□□□□ 0.38
VPS52-218ENST00000482399 TOP2BQ02880 1626 aa17.4■□□□□ 0.38
VPS52-218ENST00000482399 TIMELESSQ9UNS1 1208 aa17.39■□□□□ 0.37
VPS52-218ENST00000482399 UNC13AQ9UPW8 1703 aa17.39■□□□□ 0.37
VPS52-218ENST00000482399 BICRAQ9NZM4 1560 aa17.38■□□□□ 0.37
VPS52-218ENST00000482399 PPP4R2Q9NY27 417 aa17.37■□□□□ 0.37
VPS52-218ENST00000482399 MAPKBP1O60336 1514 aa17.37■□□□□ 0.37
VPS52-218ENST00000482399 CCDC136Q96JN2 1154 aa17.37■□□□□ 0.37
VPS52-218ENST00000482399 CUX1P39880 1505 aa17.36■□□□□ 0.37
VPS52-218ENST00000482399 RTL5Q5HYW3 569 aaPredicted RBP17.36■□□□□ 0.37
VPS52-218ENST00000482399 FHAD1B1AJZ9 1412 aa17.36■□□□□ 0.37
VPS52-218ENST00000482399 ERICH3Q5RHP9 1530 aa17.36■□□□□ 0.37
VPS52-218ENST00000482399 LRRC9Q6ZRR7 1453 aa17.36■□□□□ 0.37
VPS52-218ENST00000482399 ZNF777Q9ULD5 760 aaPredicted RBP17.33■□□□□ 0.37
VPS52-218ENST00000482399 L3MBTL2Q969R5 705 aa17.31■□□□□ 0.36
VPS52-218ENST00000482399 WASHC2AQ641Q2 1341 aa17.31■□□□□ 0.36
VPS52-218ENST00000482399 DEKP35659 375 aaKnown RBP17.3■□□□□ 0.36
VPS52-218ENST00000482399 ANP32AP39687 249 aaKnown RBP17.3■□□□□ 0.36
VPS52-218ENST00000482399 SLC4A1APQ9BWU0 796 aaKnown RBP17.28■□□□□ 0.36
VPS52-218ENST00000482399 CCDC18Q5T9S5 1454 aa17.25■□□□□ 0.35
VPS52-218ENST00000482399 KDM2AQ9Y2K7 1162 aa17.25■□□□□ 0.35
VPS52-218ENST00000482399 TMC1Q8TDI8 760 aa17.24■□□□□ 0.35
VPS52-218ENST00000482399 TIAM1Q13009 1591 aa17.24■□□□□ 0.35
VPS52-218ENST00000482399 NOP58Q9Y2X3 529 aaKnown RBP17.23■□□□□ 0.35
VPS52-218ENST00000482399 PRKRIP1Q9H875 184 aaPredicted RBP17.23■□□□□ 0.35
VPS52-218ENST00000482399 MPHOSPH9Q99550 1183 aa17.23■□□□□ 0.35
VPS52-218ENST00000482399 ZBTB47Q9UFB7 747 aaPredicted RBP17.22■□□□□ 0.35
VPS52-218ENST00000482399 TDRD9Q8NDG6 1382 aaKnown RBP17.22■□□□□ 0.35
VPS52-218ENST00000482399 C11orf95C9JLR9 678 aaPredicted RBP17.21■□□□□ 0.35
VPS52-218ENST00000482399 RTN4Q9NQC3 1192 aaKnown RBP17.21■□□□□ 0.34
VPS52-218ENST00000482399 FANCIQ9NVI1 1328 aa17.2■□□□□ 0.34
VPS52-218ENST00000482399 FGD5Q6ZNL6 1462 aa17.2■□□□□ 0.34
VPS52-218ENST00000482399 PEG3Q9GZU2 1588 aa17.19■□□□□ 0.34
VPS52-218ENST00000482399 RAD54L2Q9Y4B4 1467 aa17.19■□□□□ 0.34
VPS52-218ENST00000482399 FGD6Q6ZV73 1430 aa17.18■□□□□ 0.34
VPS52-218ENST00000482399 PAK3O75914 559 aaPredicted RBP17.18■□□□□ 0.34
VPS52-218ENST00000482399 LAS1LQ9Y4W2 734 aaKnown RBP17.17■□□□□ 0.34
VPS52-218ENST00000482399 CADPSQ9ULU8 1353 aa17.15■□□□□ 0.34
VPS52-218ENST00000482399 FMN1Q68DA7 1419 aa17.13■□□□□ 0.33
VPS52-218ENST00000482399 CFTRP13569 1480 aa17.13■□□□□ 0.33
VPS52-218ENST00000482399 FBLN2P98095 1184 aa17.13■□□□□ 0.33
VPS52-218ENST00000482399 UACAQ9BZF9 1416 aa17.12■□□□□ 0.33
VPS52-218ENST00000482399 PTPRKQ15262 1439 aa17.1■□□□□ 0.33
VPS52-218ENST00000482399 NBPF8Q3BBV2 869 aa17.1■□□□□ 0.33
VPS52-218ENST00000482399 DAXXQ9UER7 740 aaPredicted RBP17.1■□□□□ 0.33
VPS52-218ENST00000482399 BIVM-ERCC5R4GMW8 1640 aa17.1■□□□□ 0.33
VPS52-218ENST00000482399 NCAPD3P42695 1498 aa17.09■□□□□ 0.33
VPS52-218ENST00000482399 PCF11O94913 1555 aaKnown RBP17.09■□□□□ 0.33
VPS52-218ENST00000482399 AQRO60306 1485 aaKnown RBP eCLIP17.07■□□□□ 0.323e-7■■■■■ 29.5
VPS52-218ENST00000482399 KIF7Q2M1P5 1343 aa17.07■□□□□ 0.32
VPS52-218ENST00000482399 ZBED9Q6R2W3 1325 aa17.07■□□□□ 0.32
VPS52-218ENST00000482399 AKNAQ7Z591 1439 aa17.07■□□□□ 0.32
VPS52-218ENST00000482399 ZNF644Q9H582 1327 aaPredicted RBP17.07■□□□□ 0.32
VPS52-218ENST00000482399 CCDC7Q96M83 1385 aa17.05■□□□□ 0.32
VPS52-218ENST00000482399 NAIPQ13075 1403 aa17.04■□□□□ 0.32
VPS52-218ENST00000482399 CARD11Q9BXL7 1154 aa17.04■□□□□ 0.32
VPS52-218ENST00000482399 ERICH6BQ5W0A0 696 aa17.04■□□□□ 0.32
VPS52-218ENST00000482399 RGL3Q3MIN7 710 aa17.03■□□□□ 0.32
VPS52-218ENST00000482399 NUDCQ9Y266 331 aa17.03■□□□□ 0.32
VPS52-218ENST00000482399 CASKIN1Q8WXD9 1431 aa17.02■□□□□ 0.32
VPS52-218ENST00000482399 CNTLNQ9NXG0 1405 aa17.02■□□□□ 0.32
VPS52-218ENST00000482399 MYT1LQ9UL68 1186 aa17.02■□□□□ 0.31
VPS52-218ENST00000482399 HFM1A2PYH4 1435 aa17.02■□□□□ 0.31
VPS52-218ENST00000482399 NCOA2Q15596 1464 aa17.02■□□□□ 0.31
VPS52-218ENST00000482399 MYOM3Q5VTT5 1437 aa17■□□□□ 0.31
VPS52-218ENST00000482399 NEFMP07197 916 aa17■□□□□ 0.31
VPS52-218ENST00000482399 FANCD2Q9BXW9 1451 aa17■□□□□ 0.31
VPS52-218ENST00000482399 IPO9Q96P70 1041 aaKnown RBP16.99■□□□□ 0.31
VPS52-218ENST00000482399 PKD2Q13563 968 aa16.99■□□□□ 0.31
VPS52-218ENST00000482399 CFDP1Q9UEE9 299 aaPredicted RBP16.99■□□□□ 0.31
VPS52-218ENST00000482399 EXOC6Q8TAG9 804 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms