RNA–Protein interactions for RNA: ENST00000480362.5

UPF3A-206, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5

Gene UPF3A, Length 965 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-206ENST00000480362 RANGAP1P46060 587 aaPredicted RBP28.16■■■□□ 2.1
UPF3A-206ENST00000480362 CHD1O14646 1710 aa28.15■■■□□ 2.1
UPF3A-206ENST00000480362 CEP170Q5SW79 1584 aa28.1■■■□□ 2.09
UPF3A-206ENST00000480362 CLIP1P30622 1438 aa28.09■■■□□ 2.09
UPF3A-206ENST00000480362 NUP160Q12769 1436 aa28.09■■■□□ 2.09
UPF3A-206ENST00000480362 KIAA0586Q9BVV6 1533 aa28.07■■■□□ 2.08
UPF3A-206ENST00000480362 IQGAP2Q13576 1575 aa28.03■■■□□ 2.08
UPF3A-206ENST00000480362 ARHGAP35Q9NRY4 1499 aa27.95■■■□□ 2.06
UPF3A-206ENST00000480362 JPH4Q96JJ6 628 aa27.9■■■□□ 2.06
UPF3A-206ENST00000480362 UGGT2Q9NYU1 1516 aa27.9■■■□□ 2.06
UPF3A-206ENST00000480362 EFCAB5A4FU69 1503 aa27.89■■■□□ 2.06
UPF3A-206ENST00000480362 P3H3Q8IVL6 736 aa27.89■■■□□ 2.06
UPF3A-206ENST00000480362 ARAP1Q96P48 1450 aa27.87■■■□□ 2.05
UPF3A-206ENST00000480362 SAMD9Q5K651 1589 aa27.86■■■□□ 2.05
UPF3A-206ENST00000480362 OSCARQ8IYS5 282 aa27.85■■■□□ 2.05
UPF3A-206ENST00000480362 CLASP1Q7Z460 1538 aa27.83■■■□□ 2.05
UPF3A-206ENST00000480362 FHOD3Q2V2M9 1422 aa27.79■■■□□ 2.04
UPF3A-206ENST00000480362 DISP1Q96F81 1524 aa27.78■■■□□ 2.04
UPF3A-206ENST00000480362 VPS8Q8N3P4 1428 aa27.76■■■□□ 2.04
UPF3A-206ENST00000480362 KIAA0556O60303 1618 aa27.75■■■□□ 2.03
UPF3A-206ENST00000480362 SHROOM2Q13796 1616 aa27.75■■■□□ 2.03
UPF3A-206ENST00000480362 CARMIL2Q6F5E8 1435 aa27.75■■■□□ 2.03
UPF3A-206ENST00000480362 PRG4Q92954 1404 aaPredicted RBP27.74■■■□□ 2.03
UPF3A-206ENST00000480362 FMN1Q68DA7 1419 aa27.65■■■□□ 2.02
UPF3A-206ENST00000480362 TTBK1Q5TCY1 1321 aaPredicted RBP27.62■■■□□ 2.01
UPF3A-206ENST00000480362 ERCC6L2Q5T890 1561 aa27.6■■■□□ 2.01
UPF3A-206ENST00000480362 DNAJC5Q9H3Z4 198 aa27.56■■■□□ 2
UPF3A-206ENST00000480362 CASKIN1Q8WXD9 1431 aa27.55■■■□□ 2
UPF3A-206ENST00000480362 PCF11O94913 1555 aaKnown RBP27.54■■■□□ 2
UPF3A-206ENST00000480362 ATP1B4Q9UN42 357 aaPredicted RBP27.54■■■□□ 2
UPF3A-206ENST00000480362 PTPRGP23470 1445 aa27.52■■■□□ 2
UPF3A-206ENST00000480362 APLP2Q06481 763 aa27.52■■■□□ 2
UPF3A-206ENST00000480362 FYCO1Q9BQS8 1478 aa27.5■■□□□ 1.99
UPF3A-206ENST00000480362 PPARGC1BQ86YN6 1023 aaKnown RBP27.44■■□□□ 1.98
UPF3A-206ENST00000480362 RAPGEF6Q8TEU7 1601 aa27.43■■□□□ 1.98
UPF3A-206ENST00000480362 PLB1Q6P1J6 1458 aa27.43■■□□□ 1.98
UPF3A-206ENST00000480362 HECW1Q76N89 1606 aa27.41■■□□□ 1.98
UPF3A-206ENST00000480362 ABCA8O94911 1581 aa27.39■■□□□ 1.98
UPF3A-206ENST00000480362 MAP3K1Q13233 1512 aa27.36■■□□□ 1.97
UPF3A-206ENST00000480362 UACAQ9BZF9 1416 aa27.35■■□□□ 1.97
UPF3A-206ENST00000480362 LRRIQ1Q96JM4 1722 aa27.35■■□□□ 1.97
UPF3A-206ENST00000480362 TIAM1Q13009 1591 aa27.35■■□□□ 1.97
UPF3A-206ENST00000480362 NUP153P49790 1475 aaKnown RBP27.34■■□□□ 1.97
UPF3A-206ENST00000480362 ARHGEF11O15085 1522 aa27.34■■□□□ 1.97
UPF3A-206ENST00000480362 EPRSP07814 1512 aaKnown RBP27.32■■□□□ 1.96
UPF3A-206ENST00000480362 ARID3CA6NKF2 412 aa27.32■■□□□ 1.96
UPF3A-206ENST00000480362 KANK4Q5T7N3 995 aaPredicted RBP27.32■■□□□ 1.96
UPF3A-206ENST00000480362 CCDC18Q5T9S5 1454 aa27.31■■□□□ 1.96
UPF3A-206ENST00000480362 CFAP43Q8NDM7 1665 aa27.3■■□□□ 1.96
UPF3A-206ENST00000480362 CDK13Q14004 1512 aaKnown RBP27.26■■□□□ 1.96
UPF3A-206ENST00000480362 ABCC2Q92887 1545 aa27.26■■□□□ 1.95
UPF3A-206ENST00000480362 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.25■■□□□ 1.95
UPF3A-206ENST00000480362 HNRNPUL2Q1KMD3 747 aaKnown RBP27.25■■□□□ 1.95
UPF3A-206ENST00000480362 RIMBP3CA6NJZ7 1639 aa27.25■■□□□ 1.95
UPF3A-206ENST00000480362 RIMBP3BA6NNM3 1639 aa27.25■■□□□ 1.95
UPF3A-206ENST00000480362 RIMBP3Q9UFD9 1639 aa27.25■■□□□ 1.95
UPF3A-206ENST00000480362 UHRF1BP1LA0JNW5 1464 aa27.24■■□□□ 1.95
UPF3A-206ENST00000480362 LRRC9Q6ZRR7 1453 aa27.24■■□□□ 1.95
UPF3A-206ENST00000480362 ATP10BO94823 1461 aa27.22■■□□□ 1.95
UPF3A-206ENST00000480362 MTUS2Q5JR59 1369 aa27.18■■□□□ 1.94
UPF3A-206ENST00000480362 CDK11AQ9UQ88 783 aaPredicted RBP27.16■■□□□ 1.94
UPF3A-206ENST00000480362 ADCY10Q96PN6 1610 aa27.16■■□□□ 1.94
UPF3A-206ENST00000480362 MAGI3Q5TCQ9 1506 aa27.14■■□□□ 1.94
UPF3A-206ENST00000480362 CYB5RLQ6IPT4 315 aa27.13■■□□□ 1.93
UPF3A-206ENST00000480362 EHBP1L1Q8N3D4 1523 aa27.11■■□□□ 1.93
UPF3A-206ENST00000480362 KDM5BQ9UGL1 1544 aa27.11■■□□□ 1.93
UPF3A-206ENST00000480362 PLEKHD1A6NEE1 506 aa27.1■■□□□ 1.93
UPF3A-206ENST00000480362 ZCCHC11Q5TAX3 1644 aaKnown RBP27.07■■□□□ 1.92
UPF3A-206ENST00000480362 TROQ12816 1431 aaPredicted RBP27.05■■□□□ 1.92
UPF3A-206ENST00000480362 TRIM26Q12899 539 aaPredicted RBP27.04■■□□□ 1.92
UPF3A-206ENST00000480362 NPM1P06748 294 aaKnown RBP eCLIP27.03■■□□□ 1.92
UPF3A-206ENST00000480362 SUPT6HQ7KZ85 1726 aaKnown RBP27.02■■□□□ 1.92
UPF3A-206ENST00000480362 NCOA2Q15596 1464 aa26.99■■□□□ 1.91
UPF3A-206ENST00000480362 PHLDB1Q86UU1 1377 aa26.97■■□□□ 1.91
UPF3A-206ENST00000480362 KIF14Q15058 1648 aa26.91■■□□□ 1.9
UPF3A-206ENST00000480362 KCNH8Q96L42 1107 aa26.89■■□□□ 1.9
UPF3A-206ENST00000480362 PCGF6Q9BYE7 350 aa26.89■■□□□ 1.9
UPF3A-206ENST00000480362 ASXL2Q76L83 1435 aa26.89■■□□□ 1.89
UPF3A-206ENST00000480362 WDR7Q9Y4E6 1490 aa26.87■■□□□ 1.89
UPF3A-206ENST00000480362 CCNB3Q8WWL7 1395 aa26.85■■□□□ 1.89
UPF3A-206ENST00000480362 MYOM3Q5VTT5 1437 aa26.85■■□□□ 1.89
UPF3A-206ENST00000480362 RRBP1Q9P2E9 1410 aaKnown RBP26.84■■□□□ 1.89
UPF3A-206ENST00000480362 ABCC10Q5T3U5 1492 aa26.84■■□□□ 1.89
UPF3A-206ENST00000480362 FGD6Q6ZV73 1430 aa26.8■■□□□ 1.88
UPF3A-206ENST00000480362 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.79■■□□□ 1.88
UPF3A-206ENST00000480362 GPATCH8Q9UKJ3 1502 aaKnown RBP26.78■■□□□ 1.88
UPF3A-206ENST00000480362 MAPKBP1O60336 1514 aa26.77■■□□□ 1.88
UPF3A-206ENST00000480362 FAM50AQ14320 339 aaKnown RBP26.75■■□□□ 1.87
UPF3A-206ENST00000480362 MIA2Q96PC5 1412 aa26.74■■□□□ 1.87
UPF3A-206ENST00000480362 TTC37Q6PGP7 1564 aa26.74■■□□□ 1.87
UPF3A-206ENST00000480362 ITSN2Q9NZM3 1697 aa26.73■■□□□ 1.87
UPF3A-206ENST00000480362 CFDP1Q9UEE9 299 aaPredicted RBP26.72■■□□□ 1.87
UPF3A-206ENST00000480362 CDC42BPAQ5VT25 1732 aa26.72■■□□□ 1.87
UPF3A-206ENST00000480362 PTPN23Q9H3S7 1636 aa26.7■■□□□ 1.86
UPF3A-206ENST00000480362 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP26.69■■□□□ 1.86
UPF3A-206ENST00000480362 TCOF1Q13428 1488 aaKnown RBP26.68■■□□□ 1.86
UPF3A-206ENST00000480362 ABCA9Q8IUA7 1624 aa26.67■■□□□ 1.86
UPF3A-206ENST00000480362 MYO5CQ9NQX4 1742 aa26.66■■□□□ 1.86
UPF3A-206ENST00000480362 ZNF777Q9ULD5 760 aaPredicted RBP26.66■■□□□ 1.86
UPF3A-206ENST00000480362 PREX2Q70Z35 1606 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms