RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 RRBP1Q9P2E9 1410 aaKnown RBP19.58■□□□□ 0.72
SEC13-216ENST00000479868 MAP3K1Q13233 1512 aa19.58■□□□□ 0.72
SEC13-216ENST00000479868 MRC2Q9UBG0 1479 aa19.57■□□□□ 0.72
SEC13-216ENST00000479868 FHAD1B1AJZ9 1412 aa19.57■□□□□ 0.72
SEC13-216ENST00000479868 FHOD3Q2V2M9 1422 aa19.57■□□□□ 0.72
SEC13-216ENST00000479868 EFCAB5A4FU69 1503 aa19.57■□□□□ 0.72
SEC13-216ENST00000479868 PCF11O94913 1555 aaKnown RBP19.57■□□□□ 0.72
SEC13-216ENST00000479868 LRRC9Q6ZRR7 1453 aa19.51■□□□□ 0.71
SEC13-216ENST00000479868 PBRM1Q86U86 1689 aa19.51■□□□□ 0.71
SEC13-216ENST00000479868 CFAP43Q8NDM7 1665 aa19.51■□□□□ 0.71
SEC13-216ENST00000479868 CCNB3Q8WWL7 1395 aa19.5■□□□□ 0.71
SEC13-216ENST00000479868 AQRO60306 1485 aaKnown RBP eCLIP19.49■□□□□ 0.713e-7■■■□□ 18.7
SEC13-216ENST00000479868 FYCO1Q9BQS8 1478 aa19.47■□□□□ 0.71
SEC13-216ENST00000479868 CASKIN1Q8WXD9 1431 aa19.46■□□□□ 0.71
SEC13-216ENST00000479868 SAMD9Q5K651 1589 aa19.46■□□□□ 0.71
SEC13-216ENST00000479868 ATP1B4Q9UN42 357 aaPredicted RBP19.46■□□□□ 0.71
SEC13-216ENST00000479868 WDR62O43379 1518 aa19.45■□□□□ 0.7
SEC13-216ENST00000479868 FMN1Q68DA7 1419 aa19.42■□□□□ 0.7
SEC13-216ENST00000479868 PHLDB1Q86UU1 1377 aa19.41■□□□□ 0.7
SEC13-216ENST00000479868 ADAMTS12P58397 1594 aa19.41■□□□□ 0.7
SEC13-216ENST00000479868 SNAPC4Q5SXM2 1469 aa19.41■□□□□ 0.7
SEC13-216ENST00000479868 ZNF608Q9ULD9 1512 aaPredicted RBP19.4■□□□□ 0.7
SEC13-216ENST00000479868 IFT140Q96RY7 1462 aa19.4■□□□□ 0.7
SEC13-216ENST00000479868 GRIN2BQ13224 1484 aa19.39■□□□□ 0.69
SEC13-216ENST00000479868 DHX57Q6P158 1386 aaKnown RBP19.37■□□□□ 0.69
SEC13-216ENST00000479868 ITGAEP38570 1179 aa19.37■□□□□ 0.69
SEC13-216ENST00000479868 ERCC6Q03468 1493 aa19.35■□□□□ 0.69
SEC13-216ENST00000479868 LRRIQ1Q96JM4 1722 aa19.34■□□□□ 0.69
SEC13-216ENST00000479868 IQGAP2Q13576 1575 aa19.32■□□□□ 0.68
SEC13-216ENST00000479868 THOC2Q8NI27 1593 aaKnown RBP19.3■□□□□ 0.68
SEC13-216ENST00000479868 CLSPNQ9HAW4 1339 aa19.29■□□□□ 0.68
SEC13-216ENST00000479868 EIF4G3O43432 1585 aaKnown RBP19.29■□□□□ 0.68
SEC13-216ENST00000479868 FAM50AQ14320 339 aaKnown RBP19.27■□□□□ 0.68
SEC13-216ENST00000479868 DIEXFQ68CQ4 756 aaKnown RBP19.25■□□□□ 0.67
SEC13-216ENST00000479868 ZNF316A6NFI3 1004 aaPredicted RBP19.25■□□□□ 0.67
SEC13-216ENST00000479868 MTUS2Q5JR59 1369 aa19.24■□□□□ 0.67
SEC13-216ENST00000479868 RAB3GAP2Q9H2M9 1393 aa19.24■□□□□ 0.67
SEC13-216ENST00000479868 UGGT2Q9NYU1 1516 aa19.2■□□□□ 0.66
SEC13-216ENST00000479868 SETD5Q9C0A6 1442 aa19.2■□□□□ 0.66
SEC13-216ENST00000479868 FGD6Q6ZV73 1430 aa19.19■□□□□ 0.66
SEC13-216ENST00000479868 GRIN2AQ12879 1464 aa19.19■□□□□ 0.66
SEC13-216ENST00000479868 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.19■□□□□ 0.66
SEC13-216ENST00000479868 KIAA0586Q9BVV6 1533 aa19.17■□□□□ 0.66
SEC13-216ENST00000479868 NCOA2Q15596 1464 aa19.17■□□□□ 0.66
SEC13-216ENST00000479868 HECW1Q76N89 1606 aa19.17■□□□□ 0.66
SEC13-216ENST00000479868 MAGI3Q5TCQ9 1506 aa19.17■□□□□ 0.66
SEC13-216ENST00000479868 EHBP1L1Q8N3D4 1523 aa19.17■□□□□ 0.66
SEC13-216ENST00000479868 SUPT6HQ7KZ85 1726 aaKnown RBP19.16■□□□□ 0.66
SEC13-216ENST00000479868 CCDC18Q5T9S5 1454 aa19.16■□□□□ 0.66
SEC13-216ENST00000479868 MAGI1Q96QZ7 1491 aaPredicted RBP19.14■□□□□ 0.65
SEC13-216ENST00000479868 DISP1Q96F81 1524 aa19.13■□□□□ 0.65
SEC13-216ENST00000479868 MAPKBP1O60336 1514 aa19.12■□□□□ 0.65
SEC13-216ENST00000479868 EPRSP07814 1512 aaKnown RBP19.12■□□□□ 0.65
SEC13-216ENST00000479868 KIAA0556O60303 1618 aa19.12■□□□□ 0.65
SEC13-216ENST00000479868 MYOM3Q5VTT5 1437 aa19.12■□□□□ 0.65
SEC13-216ENST00000479868 ARHGEF11O15085 1522 aa19.1■□□□□ 0.65
SEC13-216ENST00000479868 CDK13Q14004 1512 aaKnown RBP19.1■□□□□ 0.65
SEC13-216ENST00000479868 SYNJ2O15056 1496 aa19.1■□□□□ 0.65
SEC13-216ENST00000479868 CEP170Q5SW79 1584 aa19.08■□□□□ 0.65
SEC13-216ENST00000479868 CHMP7Q8WUX9 453 aaPredicted RBP19.08■□□□□ 0.64
SEC13-216ENST00000479868 PTPRKQ15262 1439 aa19.06■□□□□ 0.64
SEC13-216ENST00000479868 ARID3CA6NKF2 412 aa19.06■□□□□ 0.64
SEC13-216ENST00000479868 PTPN23Q9H3S7 1636 aa19.04■□□□□ 0.64
SEC13-216ENST00000479868 FBLN2P98095 1184 aa19.04■□□□□ 0.64
SEC13-216ENST00000479868 NUP153P49790 1475 aaKnown RBP19■□□□□ 0.63
SEC13-216ENST00000479868 RAPGEF6Q8TEU7 1601 aa19■□□□□ 0.63
SEC13-216ENST00000479868 NUP160Q12769 1436 aa19■□□□□ 0.63
SEC13-216ENST00000479868 HFM1A2PYH4 1435 aa18.99■□□□□ 0.63
SEC13-216ENST00000479868 TCOF1Q13428 1488 aaKnown RBP18.98■□□□□ 0.63
SEC13-216ENST00000479868 NAIPQ13075 1403 aa18.94■□□□□ 0.62
SEC13-216ENST00000479868 SIN3AQ96ST3 1273 aa18.94■□□□□ 0.62
SEC13-216ENST00000479868 JPH4Q96JJ6 628 aa18.93■□□□□ 0.62
SEC13-216ENST00000479868 MIA2Q96PC5 1412 aa18.92■□□□□ 0.62
SEC13-216ENST00000479868 PLB1Q6P1J6 1458 aa18.91■□□□□ 0.62
SEC13-216ENST00000479868 NEUROD1Q13562 356 aa18.9■□□□□ 0.62
SEC13-216ENST00000479868 CARMIL2Q6F5E8 1435 aa18.9■□□□□ 0.62
SEC13-216ENST00000479868 MIER1Q8N108 512 aa18.89■□□□□ 0.61
SEC13-216ENST00000479868 UACAQ9BZF9 1416 aa18.89■□□□□ 0.61
SEC13-216ENST00000479868 CHIC2Q9UKJ5 165 aa18.87■□□□□ 0.61
SEC13-216ENST00000479868 CDK11AQ9UQ88 783 aaPredicted RBP18.86■□□□□ 0.61
SEC13-216ENST00000479868 GCC2Q8IWJ2 1684 aa18.85■□□□□ 0.61
SEC13-216ENST00000479868 RRP7BPQ9NSQ0 103 aa18.85■□□□□ 0.61
SEC13-216ENST00000479868 PRG4Q92954 1404 aaPredicted RBP18.84■□□□□ 0.61
SEC13-216ENST00000479868 TROQ12816 1431 aaPredicted RBP18.82■□□□□ 0.6
SEC13-216ENST00000479868 AKNAQ7Z591 1439 aa18.82■□□□□ 0.6
SEC13-216ENST00000479868 KDM6BO15054 1643 aa18.81■□□□□ 0.6
SEC13-216ENST00000479868 TIMELESSQ9UNS1 1208 aa18.81■□□□□ 0.6
SEC13-216ENST00000479868 ZNF644Q9H582 1327 aaPredicted RBP18.8■□□□□ 0.6
SEC13-216ENST00000479868 ABCA8O94911 1581 aa18.79■□□□□ 0.6
SEC13-216ENST00000479868 CHD1O14646 1710 aa18.79■□□□□ 0.6
SEC13-216ENST00000479868 SCAF1Q9H7N4 1312 aaKnown RBP18.79■□□□□ 0.6
SEC13-216ENST00000479868 ACIN1Q9UKV3 1341 aaKnown RBP18.79■□□□□ 0.6
SEC13-216ENST00000479868 KIF14Q15058 1648 aa18.79■□□□□ 0.6
SEC13-216ENST00000479868 DNMT1P26358 1616 aaKnown RBP18.78■□□□□ 0.6
SEC13-216ENST00000479868 DAPK1P53355 1430 aa18.78■□□□□ 0.6
SEC13-216ENST00000479868 ADCY10Q96PN6 1610 aa18.77■□□□□ 0.6
SEC13-216ENST00000479868 ABCC5O15440 1437 aa18.76■□□□□ 0.59
SEC13-216ENST00000479868 CENPBP07199 599 aaPredicted RBP18.75■□□□□ 0.59
SEC13-216ENST00000479868 PPP1R15AO75807 674 aaPredicted RBP18.74■□□□□ 0.59
SEC13-216ENST00000479868 ITSN2Q9NZM3 1697 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms