RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.2□□□□□ -0.46
UPF3A-205ENST00000479712 NPM1P06748 294 aaKnown RBP eCLIP12.17□□□□□ -0.46
UPF3A-205ENST00000479712 CHADLQ6NUI6 762 aa12.15□□□□□ -0.46
UPF3A-205ENST00000479712 TRIM41Q8WV44 630 aa12.14□□□□□ -0.47
UPF3A-205ENST00000479712 LHX8Q68G74 356 aa12.12□□□□□ -0.47
UPF3A-205ENST00000479712 GSE1Q14687 1217 aa12.1□□□□□ -0.47
UPF3A-205ENST00000479712 PAXIP1Q6ZW49 1069 aaPredicted RBP12.1□□□□□ -0.47
UPF3A-205ENST00000479712 PRR29P0C7W0 189 aa12.09□□□□□ -0.47
UPF3A-205ENST00000479712 CFAP44Q96MT7 982 aa12.08□□□□□ -0.48
UPF3A-205ENST00000479712 CHGAP10645 457 aaKnown RBP12.07□□□□□ -0.48
UPF3A-205ENST00000479712 NUBP1P53384 320 aa12.07□□□□□ -0.48
UPF3A-205ENST00000479712 VSIG10Q8N0Z9 540 aa12.06□□□□□ -0.48
UPF3A-205ENST00000479712 CREBZFQ9NS37 354 aa12.05□□□□□ -0.48
UPF3A-205ENST00000479712 DCAF8Q5TAQ9 597 aa12.02□□□□□ -0.49
UPF3A-205ENST00000479712 SPRYD3Q8NCJ5 442 aa12.01□□□□□ -0.49
UPF3A-205ENST00000479712 FAM212AQ96EL1 285 aa11.99□□□□□ -0.49
UPF3A-205ENST00000479712 MNX1P50219 401 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-205ENST00000479712 RNF25Q96BH1 459 aaPredicted RBP11.98□□□□□ -0.49
UPF3A-205ENST00000479712 POTEIP0CG38 1075 aa11.97□□□□□ -0.49
UPF3A-205ENST00000479712 HS6ST3Q8IZP7 471 aa11.96□□□□□ -0.49
UPF3A-205ENST00000479712 CD44P16070 742 aaKnown RBP11.93□□□□□ -0.5
UPF3A-205ENST00000479712 BCANQ96GW7 911 aa11.93□□□□□ -0.5
UPF3A-205ENST00000479712 TAOK2Q9UL54 1235 aa11.93□□□□□ -0.5
UPF3A-205ENST00000479712 RIOK3O14730 519 aaKnown RBP11.92□□□□□ -0.5
UPF3A-205ENST00000479712 FARP1Q9Y4F1 1045 aaPredicted RBP11.92□□□□□ -0.5
UPF3A-205ENST00000479712 KDM2AQ9Y2K7 1162 aa11.91□□□□□ -0.5
UPF3A-205ENST00000479712 RASEFQ8IZ41 740 aa11.9□□□□□ -0.5
UPF3A-205ENST00000479712 TSHZ2Q9NRE2 1034 aa11.88□□□□□ -0.51
UPF3A-205ENST00000479712 CLCN6P51797 869 aa11.86□□□□□ -0.51
UPF3A-205ENST00000479712 CHRM1P11229 460 aaPredicted RBP11.85□□□□□ -0.51
UPF3A-205ENST00000479712 VGFO15240 615 aaPredicted RBP11.84□□□□□ -0.51
UPF3A-205ENST00000479712 STK25O00506 426 aa11.82□□□□□ -0.52
UPF3A-205ENST00000479712 PYGBP11216 843 aa11.8□□□□□ -0.52
UPF3A-205ENST00000479712 NKX1-1Q15270 411 aaPredicted RBP11.78□□□□□ -0.52
UPF3A-205ENST00000479712 DCBLD2Q96PD2 775 aa11.75□□□□□ -0.53
UPF3A-205ENST00000479712 SGIP1Q9BQI5 828 aa11.75□□□□□ -0.53
UPF3A-205ENST00000479712 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-205ENST00000479712 ZNF579Q8NAF0 562 aaKnown RBP11.73□□□□□ -0.53
UPF3A-205ENST00000479712 ZFP91Q96JP5 570 aaPredicted RBP11.73□□□□□ -0.53
UPF3A-205ENST00000479712 STK24Q9Y6E0 443 aa11.73□□□□□ -0.53
UPF3A-205ENST00000479712 NISCHQ9Y2I1 1504 aa11.72□□□□□ -0.53
UPF3A-205ENST00000479712 GTPBP6O43824 516 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-205ENST00000479712 BCL11BQ9C0K0 894 aaPredicted RBP11.72□□□□□ -0.53
UPF3A-205ENST00000479712 TSPYL2Q9H2G4 693 aaPredicted RBP11.71□□□□□ -0.53
UPF3A-205ENST00000479712 ZRANB1Q9UGI0 708 aa11.71□□□□□ -0.53
UPF3A-205ENST00000479712 ZNF467Q7Z7K2 595 aaPredicted RBP11.65□□□□□ -0.54
UPF3A-205ENST00000479712 RYDENQ9NUL5 291 aaKnown RBP11.65□□□□□ -0.54
UPF3A-205ENST00000479712 GALR2O43603 387 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-205ENST00000479712 PRKCSHP14314 528 aaPredicted RBP11.63□□□□□ -0.55
UPF3A-205ENST00000479712 PLSCR2Q9NRY7 297 aa11.62□□□□□ -0.55
UPF3A-205ENST00000479712 OTUD5Q96G74 571 aa11.59□□□□□ -0.55
UPF3A-205ENST00000479712 PDAP1Q13442 181 aaKnown RBP11.58□□□□□ -0.56
UPF3A-205ENST00000479712 CCDC61Q9Y6R9 512 aa11.58□□□□□ -0.56
UPF3A-205ENST00000479712 POTEB2H3BUK9 544 aa11.57□□□□□ -0.56
UPF3A-205ENST00000479712 NBR1Q14596 966 aa11.57□□□□□ -0.56
UPF3A-205ENST00000479712 TPRNQ4KMQ1 711 aa11.56□□□□□ -0.56
UPF3A-205ENST00000479712 PCDHB8Q9UN66 801 aa11.56□□□□□ -0.56
UPF3A-205ENST00000479712 PCDHB13Q9Y5F0 798 aa11.56□□□□□ -0.56
UPF3A-205ENST00000479712 PAK3O75914 559 aaPredicted RBP11.55□□□□□ -0.56
UPF3A-205ENST00000479712 PHF12Q96QT6 1004 aa11.51□□□□□ -0.57
UPF3A-205ENST00000479712 PSEN1P49768 467 aa11.5□□□□□ -0.57
UPF3A-205ENST00000479712 PELP1Q8IZL8 1130 aaKnown RBP11.47□□□□□ -0.57
UPF3A-205ENST00000479712 IFNL1Q8IU54 200 aa11.45□□□□□ -0.58
UPF3A-205ENST00000479712 MAP3K13O43283 966 aa11.43□□□□□ -0.58
UPF3A-205ENST00000479712 KIF12Q96FN5 646 aa11.43□□□□□ -0.58
UPF3A-205ENST00000479712 POTEMA6NI47 508 aa11.42□□□□□ -0.58
UPF3A-205ENST00000479712 MFRPQ9BY79 579 aa11.42□□□□□ -0.58
UPF3A-205ENST00000479712 ASTLQ6HA08 431 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-205ENST00000479712 POTEGQ6S5H5 508 aa11.37□□□□□ -0.59
UPF3A-205ENST00000479712 CADPS2Q86UW7 1296 aa11.37□□□□□ -0.59
UPF3A-205ENST00000479712 P3H3Q8IVL6 736 aa11.37□□□□□ -0.59
UPF3A-205ENST00000479712 CABP2Q9NPB3 220 aa11.37□□□□□ -0.59
UPF3A-205ENST00000479712 EFCAB3Q8N7B9 438 aa11.36□□□□□ -0.59
UPF3A-205ENST00000479712 WDR70Q9NW82 654 aa11.36□□□□□ -0.59
UPF3A-205ENST00000479712 MS4A3Q96HJ5 214 aa11.35□□□□□ -0.59
UPF3A-205ENST00000479712 ATMINO43313 823 aaPredicted RBP11.34□□□□□ -0.59
UPF3A-205ENST00000479712 POTEJP0CG39 1038 aa11.34□□□□□ -0.59
UPF3A-205ENST00000479712 SOX12O15370 315 aa11.33□□□□□ -0.6
UPF3A-205ENST00000479712 NLRP6P59044 892 aa11.33□□□□□ -0.6
UPF3A-205ENST00000479712 METRNQ9UJH8 293 aa11.33□□□□□ -0.6
UPF3A-205ENST00000479712 C7P10643 843 aa11.31□□□□□ -0.6
UPF3A-205ENST00000479712 FBXO22Q8NEZ5 403 aa11.31□□□□□ -0.6
UPF3A-205ENST00000479712 SLC39A7Q92504 469 aa11.31□□□□□ -0.6
UPF3A-205ENST00000479712 PHF8Q9UPP1 1060 aa11.31□□□□□ -0.6
UPF3A-205ENST00000479712 PPP1R37O75864 691 aa11.29□□□□□ -0.6
UPF3A-205ENST00000479712 KCNV2Q8TDN2 545 aa11.28□□□□□ -0.6
UPF3A-205ENST00000479712 PCDH10Q9P2E7 1040 aa11.26□□□□□ -0.61
UPF3A-205ENST00000479712 GOLGA2Q08379 1002 aa11.23□□□□□ -0.61
UPF3A-205ENST00000479712 MAMSTRQ6ZN01 415 aa11.23□□□□□ -0.61
UPF3A-205ENST00000479712 ATN1P54259 1190 aaPredicted RBP11.22□□□□□ -0.61
UPF3A-205ENST00000479712 TMEM106CQ9BVX2 250 aa11.22□□□□□ -0.61
UPF3A-205ENST00000479712 LCE2DQ5TA82 110 aaPredicted RBP11.21□□□□□ -0.61
UPF3A-205ENST00000479712 MS4A4AQ96JQ5 239 aa11.18□□□□□ -0.62
UPF3A-205ENST00000479712 POTEFA5A3E0 1075 aa11.17□□□□□ -0.62
UPF3A-205ENST00000479712 TRPC6Q9Y210 931 aa11.17□□□□□ -0.62
UPF3A-205ENST00000479712 MKRN3Q13064 507 aaKnown RBP11.16□□□□□ -0.62
UPF3A-205ENST00000479712 E2F4Q16254 413 aa11.16□□□□□ -0.62
UPF3A-205ENST00000479712 FAM163AQ96GL9 167 aaPredicted RBP11.16□□□□□ -0.62
UPF3A-205ENST00000479712 ARHGEF1Q92888 912 aaKnown RBP11.14□□□□□ -0.63
UPF3A-205ENST00000479712 SCUBE2Q9NQ36 999 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms