RNA–Protein interactions for RNA: ENST00000478938.1

SDF4-206, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,591 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-206ENST00000478938 HNRNPUQ00839 825 aaKnown RBP eCLIP29.39■■■□□ 2.3
SDF4-206ENST00000478938 B4GALNT3Q6L9W6 998 aa29.39■■■□□ 2.3
SDF4-206ENST00000478938 CEP164Q9UPV0 1460 aa29.38■■■□□ 2.29
SDF4-206ENST00000478938 MAPKBP1O60336 1514 aa29.33■■■□□ 2.29
SDF4-206ENST00000478938 KIF21BO75037 1637 aa29.3■■■□□ 2.28
SDF4-206ENST00000478938 CUX2O14529 1486 aa29.28■■■□□ 2.28
SDF4-206ENST00000478938 PABPN1Q86U42 306 aaKnown RBP eCLIP29.27■■■□□ 2.281e-10■■■■□ 21.1
SDF4-206ENST00000478938 KANK4Q5T7N3 995 aaPredicted RBP29.25■■■□□ 2.27
SDF4-206ENST00000478938 IPO9Q96P70 1041 aaKnown RBP29.25■■■□□ 2.27
SDF4-206ENST00000478938 EIF5BO60841 1220 aaKnown RBP29.24■■■□□ 2.27
SDF4-206ENST00000478938 ANP32AP39687 249 aaKnown RBP29.21■■■□□ 2.27
SDF4-206ENST00000478938 SIN3AQ96ST3 1273 aa29.2■■■□□ 2.27
SDF4-206ENST00000478938 ZBTB47Q9UFB7 747 aaPredicted RBP29.2■■■□□ 2.27
SDF4-206ENST00000478938 RRBP1Q9P2E9 1410 aaKnown RBP29.2■■■□□ 2.26
SDF4-206ENST00000478938 WASHC2AQ641Q2 1341 aa29.18■■■□□ 2.26
SDF4-206ENST00000478938 RAB3GAP2Q9H2M9 1393 aa29.16■■■□□ 2.26
SDF4-206ENST00000478938 TOP2AP11388 1531 aaKnown RBP29.12■■■□□ 2.25
SDF4-206ENST00000478938 RAPGEF2Q9Y4G8 1499 aa29.12■■■□□ 2.25
SDF4-206ENST00000478938 PKNOX2Q96KN3 472 aa29.11■■■□□ 2.25
SDF4-206ENST00000478938 SMARCA2P51531 1590 aa29.1■■■□□ 2.25
SDF4-206ENST00000478938 BAZ1BQ9UIG0 1483 aaKnown RBP29.09■■■□□ 2.25
SDF4-206ENST00000478938 CCNB3Q8WWL7 1395 aa29.07■■■□□ 2.24
SDF4-206ENST00000478938 BRPF3Q9ULD4 1205 aa29.07■■■□□ 2.24
SDF4-206ENST00000478938 C11orf95C9JLR9 678 aaPredicted RBP29.06■■■□□ 2.24
SDF4-206ENST00000478938 NEFMP07197 916 aa29.02■■■□□ 2.24
SDF4-206ENST00000478938 LAS1LQ9Y4W2 734 aaKnown RBP29.01■■■□□ 2.23
SDF4-206ENST00000478938 WASHC2CQ9Y4E1 1318 aa29.01■■■□□ 2.23
SDF4-206ENST00000478938 SMARCA4P51532 1647 aa28.99■■■□□ 2.23
SDF4-206ENST00000478938 ARAP1Q96P48 1450 aa28.93■■■□□ 2.22
SDF4-206ENST00000478938 TIMELESSQ9UNS1 1208 aa28.88■■■□□ 2.21
SDF4-206ENST00000478938 USP35Q9P2H5 1018 aa28.87■■■□□ 2.21
SDF4-206ENST00000478938 NPM2Q86SE8 214 aaKnown RBP28.86■■■□□ 2.21
SDF4-206ENST00000478938 SETD5Q9C0A6 1442 aa28.85■■■□□ 2.21
SDF4-206ENST00000478938 CCDC184Q52MB2 194 aa28.85■■■□□ 2.21
SDF4-206ENST00000478938 SYNJ1O43426 1573 aa28.84■■■□□ 2.21
SDF4-206ENST00000478938 FAM9BQ8IZU0 186 aa28.76■■■□□ 2.19
SDF4-206ENST00000478938 ZBED9Q6R2W3 1325 aa28.72■■■□□ 2.19
SDF4-206ENST00000478938 GSE1Q14687 1217 aa28.71■■■□□ 2.19
SDF4-206ENST00000478938 RSPH6AQ9H0K4 717 aa28.7■■■□□ 2.19
SDF4-206ENST00000478938 AKNAQ7Z591 1439 aa28.69■■■□□ 2.18
SDF4-206ENST00000478938 NCAPD3P42695 1498 aa28.68■■■□□ 2.18
SDF4-206ENST00000478938 PPM1GO15355 546 aaPredicted RBP28.67■■■□□ 2.18
SDF4-206ENST00000478938 PEG3Q9GZU2 1588 aa28.64■■■□□ 2.17
SDF4-206ENST00000478938 TONSLQ96HA7 1378 aa28.62■■■□□ 2.17
SDF4-206ENST00000478938 FRAT1Q92837 279 aaPredicted RBP28.6■■■□□ 2.17
SDF4-206ENST00000478938 MRS2Q9HD23 443 aa28.58■■■□□ 2.17
SDF4-206ENST00000478938 ZMYND15Q9H091 742 aa28.54■■■□□ 2.16
SDF4-206ENST00000478938 FAM50AQ14320 339 aaKnown RBP28.54■■■□□ 2.16
SDF4-206ENST00000478938 VSIG10Q8N0Z9 540 aa28.51■■■□□ 2.15
SDF4-206ENST00000478938 FAM43AQ8N2R8 423 aa28.5■■■□□ 2.15
SDF4-206ENST00000478938 GLIPR1L2Q4G1C9 344 aa28.49■■■□□ 2.15
SDF4-206ENST00000478938 PDE4AP27815 886 aa28.49■■■□□ 2.15
SDF4-206ENST00000478938 NFKBIBQ15653 356 aa28.49■■■□□ 2.15
SDF4-206ENST00000478938 SMG6Q86US8 1419 aaKnown RBP28.48■■■□□ 2.15
SDF4-206ENST00000478938 PLEKHG5O94827 1062 aa28.47■■■□□ 2.15
SDF4-206ENST00000478938 PRKRIP1Q9H875 184 aaPredicted RBP28.47■■■□□ 2.15
SDF4-206ENST00000478938 FHAD1B1AJZ9 1412 aa28.46■■■□□ 2.15
SDF4-206ENST00000478938 RNF123Q5XPI4 1314 aa28.46■■■□□ 2.15
SDF4-206ENST00000478938 CNTLNQ9NXG0 1405 aa28.44■■■□□ 2.14
SDF4-206ENST00000478938 ERICH3Q5RHP9 1530 aa28.44■■■□□ 2.14
SDF4-206ENST00000478938 HSPA5P11021 654 aaKnown RBP28.43■■■□□ 2.14
SDF4-206ENST00000478938 PHLDB1Q86UU1 1377 aa28.42■■■□□ 2.14
SDF4-206ENST00000478938 NUDCQ9Y266 331 aa28.41■■■□□ 2.14
SDF4-206ENST00000478938 BACH2Q9BYV9 841 aa28.41■■■□□ 2.14
SDF4-206ENST00000478938 DCAF11Q8TEB1 546 aa28.4■■■□□ 2.14
SDF4-206ENST00000478938 PRXQ9BXM0 1461 aa28.39■■■□□ 2.14
SDF4-206ENST00000478938 TCERG1O14776 1098 aaKnown RBP28.39■■■□□ 2.13
SDF4-206ENST00000478938 NCOA2Q15596 1464 aa28.37■■■□□ 2.13
SDF4-206ENST00000478938 CC2D2AQ9P2K1 1620 aa28.37■■■□□ 2.13
SDF4-206ENST00000478938 ARHGAP35Q9NRY4 1499 aa28.36■■■□□ 2.13
SDF4-206ENST00000478938 SENP3-EIF4A1A0A087X0R7 540 aa28.36■■■□□ 2.13
SDF4-206ENST00000478938 PODXL2Q9NZ53 605 aa28.36■■■□□ 2.13
SDF4-206ENST00000478938 SLC4A3P48751 1232 aa28.32■■■□□ 2.12
SDF4-206ENST00000478938 TIAM1Q13009 1591 aa28.31■■■□□ 2.12
SDF4-206ENST00000478938 KDM5BQ9UGL1 1544 aa28.3■■■□□ 2.12
SDF4-206ENST00000478938 DDRGK1Q96HY6 314 aa28.26■■■□□ 2.11
SDF4-206ENST00000478938 RRAGDQ9NQL2 400 aaPredicted RBP28.24■■■□□ 2.11
SDF4-206ENST00000478938 LRRC9Q6ZRR7 1453 aa28.23■■■□□ 2.11
SDF4-206ENST00000478938 EXOC6Q8TAG9 804 aa28.22■■■□□ 2.11
SDF4-206ENST00000478938 ATAD2BQ9ULI0 1458 aa28.22■■■□□ 2.11
SDF4-206ENST00000478938 MS4A1P11836 297 aa28.21■■■□□ 2.11
SDF4-206ENST00000478938 EIF4G2P78344 907 aaKnown RBP eCLIP28.2■■■□□ 2.13e-10■■■■■ 39.5
SDF4-206ENST00000478938 FRAT2O75474 233 aaPredicted RBP28.19■■■□□ 2.1
SDF4-206ENST00000478938 CCDC7Q96M83 1385 aa28.18■■■□□ 2.1
SDF4-206ENST00000478938 SKAP1Q86WV1 359 aa28.16■■■□□ 2.1
SDF4-206ENST00000478938 CNGB1Q14028 1251 aaPredicted RBP28.16■■■□□ 2.1
SDF4-206ENST00000478938 HSP90AA2PQ14568 343 aaPredicted RBP28.13■■■□□ 2.09
SDF4-206ENST00000478938 CCDC18Q5T9S5 1454 aa28.13■■■□□ 2.09
SDF4-206ENST00000478938 MAP3K1Q13233 1512 aa28.12■■■□□ 2.09
SDF4-206ENST00000478938 TOP2BQ02880 1626 aa28.12■■■□□ 2.09
SDF4-206ENST00000478938 DAXXQ9UER7 740 aaPredicted RBP28.11■■■□□ 2.09
SDF4-206ENST00000478938 NCOA1Q15788 1441 aa28.11■■■□□ 2.09
SDF4-206ENST00000478938 HMGXB3Q12766 1538 aa28.1■■■□□ 2.09
SDF4-206ENST00000478938 RRP1P56182 461 aaKnown RBP28.09■■■□□ 2.09
SDF4-206ENST00000478938 NAP1L5Q96NT1 182 aaPredicted RBP28.08■■■□□ 2.09
SDF4-206ENST00000478938 UACAQ9BZF9 1416 aa28.08■■■□□ 2.09
SDF4-206ENST00000478938 DNAJC5BQ9UF47 199 aa28.06■■■□□ 2.08
SDF4-206ENST00000478938 RRP9O43818 475 aaKnown RBP28.03■■■□□ 2.08
SDF4-206ENST00000478938 AQRO60306 1485 aaKnown RBP eCLIP28.02■■■□□ 2.083e-9■■□□□ 13.4
SDF4-206ENST00000478938 HSP90AA1P07900 732 aaKnown RBP28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms