RNA–Protein interactions for RNA: ENST00000476932.5

LIMS2-214, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 2,269 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-214ENST00000476932 WDR97A6NE52 1622 aa31.13■■■□□ 2.57
LIMS2-214ENST00000476932 CENPBP07199 599 aaPredicted RBP31.12■■■□□ 2.57
LIMS2-214ENST00000476932 LRRC9Q6ZRR7 1453 aa31.12■■■□□ 2.57
LIMS2-214ENST00000476932 CTTNBP2Q8WZ74 1663 aa31.09■■■□□ 2.57
LIMS2-214ENST00000476932 FHAD1B1AJZ9 1412 aa31.08■■■□□ 2.57
LIMS2-214ENST00000476932 LAMC3Q9Y6N6 1575 aa31.08■■■□□ 2.57
LIMS2-214ENST00000476932 EFCAB5A4FU69 1503 aa31.03■■■□□ 2.56
LIMS2-214ENST00000476932 URB2Q14146 1524 aaKnown RBP31.02■■■□□ 2.56
LIMS2-214ENST00000476932 MIER1Q8N108 512 aa31.01■■■□□ 2.55
LIMS2-214ENST00000476932 PHLDB1Q86UU1 1377 aa30.99■■■□□ 2.55
LIMS2-214ENST00000476932 FHOD3Q2V2M9 1422 aa30.97■■■□□ 2.55
LIMS2-214ENST00000476932 FYCO1Q9BQS8 1478 aa30.96■■■□□ 2.55
LIMS2-214ENST00000476932 ABCA5Q8WWZ7 1642 aa30.95■■■□□ 2.55
LIMS2-214ENST00000476932 RAB3GAP2Q9H2M9 1393 aa30.93■■■□□ 2.54
LIMS2-214ENST00000476932 AQRO60306 1485 aaKnown RBP eCLIP30.92■■■□□ 2.54
LIMS2-214ENST00000476932 ITGAEP38570 1179 aa30.91■■■□□ 2.54
LIMS2-214ENST00000476932 GTF3C3Q9Y5Q9 886 aa30.91■■■□□ 2.54
LIMS2-214ENST00000476932 MAPKBP1O60336 1514 aa30.91■■■□□ 2.54
LIMS2-214ENST00000476932 P3H3Q8IVL6 736 aa30.9■■■□□ 2.54
LIMS2-214ENST00000476932 CASKIN1Q8WXD9 1431 aa30.89■■■□□ 2.54
LIMS2-214ENST00000476932 KIF21AQ7Z4S6 1674 aa30.82■■■□□ 2.52
LIMS2-214ENST00000476932 SETD5Q9C0A6 1442 aa30.82■■■□□ 2.52
LIMS2-214ENST00000476932 SAMD9Q5K651 1589 aa30.81■■■□□ 2.52
LIMS2-214ENST00000476932 SNAPC4Q5SXM2 1469 aa30.8■■■□□ 2.52
LIMS2-214ENST00000476932 YTHDC1Q96MU7 727 aaKnown RBP30.79■■■□□ 2.52
LIMS2-214ENST00000476932 GAPVD1Q14C86 1478 aa30.76■■■□□ 2.51
LIMS2-214ENST00000476932 LRRIQ1Q96JM4 1722 aa30.76■■■□□ 2.51
LIMS2-214ENST00000476932 PDS5BQ9NTI5 1447 aa30.75■■■□□ 2.51
LIMS2-214ENST00000476932 TDRD9Q8NDG6 1382 aaKnown RBP30.74■■■□□ 2.51
LIMS2-214ENST00000476932 FMN1Q68DA7 1419 aa30.74■■■□□ 2.51
LIMS2-214ENST00000476932 DNAJC5BQ9UF47 199 aa30.72■■■□□ 2.51
LIMS2-214ENST00000476932 TARBP1Q13395 1621 aaKnown RBP30.71■■■□□ 2.51
LIMS2-214ENST00000476932 FAM50AQ14320 339 aaKnown RBP30.7■■■□□ 2.5
LIMS2-214ENST00000476932 ATP1B4Q9UN42 357 aaPredicted RBP30.7■■■□□ 2.5
LIMS2-214ENST00000476932 PELP1Q8IZL8 1130 aaKnown RBP30.69■■■□□ 2.5
LIMS2-214ENST00000476932 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP30.69■■■□□ 2.5
LIMS2-214ENST00000476932 GRIN2BQ13224 1484 aa30.61■■■□□ 2.49
LIMS2-214ENST00000476932 FGD6Q6ZV73 1430 aa30.6■■■□□ 2.49
LIMS2-214ENST00000476932 THOC2Q8NI27 1593 aaKnown RBP30.6■■■□□ 2.49
LIMS2-214ENST00000476932 PBRM1Q86U86 1689 aa30.58■■■□□ 2.49
LIMS2-214ENST00000476932 MTUS2Q5JR59 1369 aa30.5■■■□□ 2.47
LIMS2-214ENST00000476932 SUPT6HQ7KZ85 1726 aaKnown RBP30.48■■■□□ 2.47
LIMS2-214ENST00000476932 EHBP1L1Q8N3D4 1523 aa30.47■■■□□ 2.47
LIMS2-214ENST00000476932 NCOA2Q15596 1464 aa30.47■■■□□ 2.47
LIMS2-214ENST00000476932 SIN3AQ96ST3 1273 aa30.45■■■□□ 2.47
LIMS2-214ENST00000476932 PTPRKQ15262 1439 aa30.44■■■□□ 2.46
LIMS2-214ENST00000476932 ADAMTS12P58397 1594 aa30.44■■■□□ 2.46
LIMS2-214ENST00000476932 MYOM3Q5VTT5 1437 aa30.42■■■□□ 2.46
LIMS2-214ENST00000476932 PTPN23Q9H3S7 1636 aa30.42■■■□□ 2.46
LIMS2-214ENST00000476932 ARHGEF11O15085 1522 aa30.41■■■□□ 2.46
LIMS2-214ENST00000476932 MAGI3Q5TCQ9 1506 aa30.41■■■□□ 2.46
LIMS2-214ENST00000476932 UGGT2Q9NYU1 1516 aa30.4■■■□□ 2.46
LIMS2-214ENST00000476932 CCDC18Q5T9S5 1454 aa30.39■■■□□ 2.46
LIMS2-214ENST00000476932 HFM1A2PYH4 1435 aa30.39■■■□□ 2.46
LIMS2-214ENST00000476932 IQGAP2Q13576 1575 aa30.39■■■□□ 2.46
LIMS2-214ENST00000476932 MRC2Q9UBG0 1479 aa30.36■■■□□ 2.45
LIMS2-214ENST00000476932 TIMELESSQ9UNS1 1208 aa30.35■■■□□ 2.45
LIMS2-214ENST00000476932 HECW1Q76N89 1606 aa30.35■■■□□ 2.45
LIMS2-214ENST00000476932 NAIPQ13075 1403 aa30.29■■■□□ 2.44
LIMS2-214ENST00000476932 UACAQ9BZF9 1416 aa30.29■■■□□ 2.44
LIMS2-214ENST00000476932 TCOF1Q13428 1488 aaKnown RBP30.24■■■□□ 2.43
LIMS2-214ENST00000476932 WDR62O43379 1518 aa30.24■■■□□ 2.43
LIMS2-214ENST00000476932 EPRSP07814 1512 aaKnown RBP30.23■■■□□ 2.43
LIMS2-214ENST00000476932 PPP1R15AO75807 674 aaPredicted RBP30.21■■■□□ 2.43
LIMS2-214ENST00000476932 GCC2Q8IWJ2 1684 aa30.21■■■□□ 2.43
LIMS2-214ENST00000476932 CDK13Q14004 1512 aaKnown RBP30.18■■■□□ 2.42
LIMS2-214ENST00000476932 ZNF608Q9ULD9 1512 aaPredicted RBP30.17■■■□□ 2.42
LIMS2-214ENST00000476932 IFT140Q96RY7 1462 aa30.16■■■□□ 2.42
LIMS2-214ENST00000476932 KDM5BQ9UGL1 1544 aa30.11■■■□□ 2.41
LIMS2-214ENST00000476932 KIAA0556O60303 1618 aa30.09■■■□□ 2.41
LIMS2-214ENST00000476932 TONSLQ96HA7 1378 aa30.09■■■□□ 2.41
LIMS2-214ENST00000476932 KCNH8Q96L42 1107 aa30.08■■■□□ 2.41
LIMS2-214ENST00000476932 AKNAQ7Z591 1439 aa30.08■■■□□ 2.41
LIMS2-214ENST00000476932 DDX10Q13206 875 aaKnown RBP30.07■■■□□ 2.4
LIMS2-214ENST00000476932 KDM6BO15054 1643 aa30.06■■■□□ 2.4
LIMS2-214ENST00000476932 DISP1Q96F81 1524 aa30.06■■■□□ 2.4
LIMS2-214ENST00000476932 MIA2Q96PC5 1412 aa30.06■■■□□ 2.4
LIMS2-214ENST00000476932 DENND4BO75064 1496 aaPredicted RBP30.05■■■□□ 2.4
LIMS2-214ENST00000476932 EIF4G3O43432 1585 aaKnown RBP30.04■■■□□ 2.4
LIMS2-214ENST00000476932 KIAA0586Q9BVV6 1533 aa30.04■■■□□ 2.4
LIMS2-214ENST00000476932 HIRIP3Q9BW71 556 aaPredicted RBP29.99■■■□□ 2.39
LIMS2-214ENST00000476932 GRIN2AQ12879 1464 aa29.98■■■□□ 2.39
LIMS2-214ENST00000476932 RRP7BPQ9NSQ0 103 aa29.97■■■□□ 2.39
LIMS2-214ENST00000476932 RAPGEF6Q8TEU7 1601 aa29.95■■■□□ 2.39
LIMS2-214ENST00000476932 NUP153P49790 1475 aaKnown RBP29.95■■■□□ 2.39
LIMS2-214ENST00000476932 CHIC2Q9UKJ5 165 aa29.94■■■□□ 2.38
LIMS2-214ENST00000476932 SUPT16HQ9Y5B9 1047 aaKnown RBP29.91■■■□□ 2.38
LIMS2-214ENST00000476932 ARID3CA6NKF2 412 aa29.91■■■□□ 2.38
LIMS2-214ENST00000476932 DNMT1P26358 1616 aaKnown RBP29.9■■■□□ 2.38
LIMS2-214ENST00000476932 DAPK1P53355 1430 aa29.85■■■□□ 2.37
LIMS2-214ENST00000476932 CEP170Q5SW79 1584 aa29.83■■■□□ 2.37
LIMS2-214ENST00000476932 MAGI1Q96QZ7 1491 aaPredicted RBP29.83■■■□□ 2.37
LIMS2-214ENST00000476932 ROCK1Q13464 1354 aa29.81■■■□□ 2.36
LIMS2-214ENST00000476932 ABCC5O15440 1437 aa29.8■■■□□ 2.36
LIMS2-214ENST00000476932 CCER2I3L3R5 266 aa29.79■■■□□ 2.36
LIMS2-214ENST00000476932 ERCC6Q03468 1493 aa29.79■■■□□ 2.36
LIMS2-214ENST00000476932 TRIM52Q96A61 297 aa29.77■■■□□ 2.36
LIMS2-214ENST00000476932 MPHOSPH9Q99550 1183 aa29.75■■■□□ 2.35
LIMS2-214ENST00000476932 SYNJ2O15056 1496 aa29.75■■■□□ 2.35
LIMS2-214ENST00000476932 ANP32CO43423 234 aa29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms