RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 HS6ST3Q8IZP7 471 aa8.91□□□□□ -0.98
VPS13D-207ENST00000476169 REM2Q8IYK8 340 aaPredicted RBP8.9□□□□□ -0.98
VPS13D-207ENST00000476169 CREBZFQ9NS37 354 aa8.9□□□□□ -0.98
VPS13D-207ENST00000476169 RNF25Q96BH1 459 aaPredicted RBP8.89□□□□□ -0.99
VPS13D-207ENST00000476169 TSHZ2Q9NRE2 1034 aa8.89□□□□□ -0.99
VPS13D-207ENST00000476169 FAM212AQ96EL1 285 aa8.88□□□□□ -0.99
VPS13D-207ENST00000476169 TAOK2Q9UL54 1235 aa8.87□□□□□ -0.99
VPS13D-207ENST00000476169 RIOK3O14730 519 aaKnown RBP8.86□□□□□ -0.99
VPS13D-207ENST00000476169 MNX1P50219 401 aaPredicted RBP8.84□□□□□ -0.99
VPS13D-207ENST00000476169 DNAJC5Q9H3Z4 198 aa8.82□□□□□ -1
VPS13D-207ENST00000476169 RASEFQ8IZ41 740 aa8.81□□□□□ -1
VPS13D-207ENST00000476169 PITPNM1O00562 1244 aa8.79□□□□□ -1
VPS13D-207ENST00000476169 VGFO15240 615 aaPredicted RBP8.79□□□□□ -1
VPS13D-207ENST00000476169 CHRM1P11229 460 aaPredicted RBP8.79□□□□□ -1
VPS13D-207ENST00000476169 STK25O00506 426 aa8.78□□□□□ -1
VPS13D-207ENST00000476169 PRKCSHP14314 528 aaPredicted RBP8.77□□□□□ -1.01
VPS13D-207ENST00000476169 NKX1-1Q15270 411 aaPredicted RBP8.77□□□□□ -1.01
VPS13D-207ENST00000476169 GTPBP6O43824 516 aaPredicted RBP8.73□□□□□ -1.01
VPS13D-207ENST00000476169 PYGBP11216 843 aa8.73□□□□□ -1.01
VPS13D-207ENST00000476169 STK24Q9Y6E0 443 aa8.72□□□□□ -1.01
VPS13D-207ENST00000476169 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-207ENST00000476169 ZFP91Q96JP5 570 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-207ENST00000476169 SGIP1Q9BQI5 828 aa8.71□□□□□ -1.02
VPS13D-207ENST00000476169 BCL11BQ9C0K0 894 aaPredicted RBP8.71□□□□□ -1.02
VPS13D-207ENST00000476169 TPRNQ4KMQ1 711 aa8.7□□□□□ -1.02
VPS13D-207ENST00000476169 NBR1Q14596 966 aa8.68□□□□□ -1.02
VPS13D-207ENST00000476169 CHADLQ6NUI6 762 aa8.68□□□□□ -1.02
VPS13D-207ENST00000476169 RYDENQ9NUL5 291 aaKnown RBP8.67□□□□□ -1.02
VPS13D-207ENST00000476169 TSPYL2Q9H2G4 693 aaPredicted RBP8.66□□□□□ -1.02
VPS13D-207ENST00000476169 FARP1Q9Y4F1 1045 aaPredicted RBP8.64□□□□□ -1.03
VPS13D-207ENST00000476169 ZNF467Q7Z7K2 595 aaPredicted RBP8.63□□□□□ -1.03
VPS13D-207ENST00000476169 PDAP1Q13442 181 aaKnown RBP8.59□□□□□ -1.03
VPS13D-207ENST00000476169 PRKAR2AP13861 404 aaKnown RBP8.58□□□□□ -1.04
VPS13D-207ENST00000476169 PCDHB8Q9UN66 801 aa8.57□□□□□ -1.04
VPS13D-207ENST00000476169 PCDHB13Q9Y5F0 798 aa8.57□□□□□ -1.04
VPS13D-207ENST00000476169 CCDC61Q9Y6R9 512 aa8.54□□□□□ -1.04
VPS13D-207ENST00000476169 PAK3O75914 559 aaPredicted RBP8.53□□□□□ -1.04
VPS13D-207ENST00000476169 PSEN1P49768 467 aa8.53□□□□□ -1.04
VPS13D-207ENST00000476169 ZNF579Q8NAF0 562 aaKnown RBP8.53□□□□□ -1.04
VPS13D-207ENST00000476169 FXR2P51116 673 aaKnown RBP eCLIP8.52□□□□□ -1.05
VPS13D-207ENST00000476169 P3H3Q8IVL6 736 aa8.48□□□□□ -1.05
VPS13D-207ENST00000476169 WDR70Q9NW82 654 aa8.48□□□□□ -1.05
VPS13D-207ENST00000476169 CADPS2Q86UW7 1296 aa8.47□□□□□ -1.05
VPS13D-207ENST00000476169 MFRPQ9BY79 579 aa8.47□□□□□ -1.05
VPS13D-207ENST00000476169 IFNL1Q8IU54 200 aa8.46□□□□□ -1.06
VPS13D-207ENST00000476169 MAP3K13O43283 966 aa8.45□□□□□ -1.06
VPS13D-207ENST00000476169 CHRDL2Q6WN34 429 aa8.45□□□□□ -1.06
VPS13D-207ENST00000476169 PIP4P2Q8N4L2 257 aa8.44□□□□□ -1.06
VPS13D-207ENST00000476169 KIF12Q96FN5 646 aa8.44□□□□□ -1.06
VPS13D-207ENST00000476169 CABP2Q9NPB3 220 aa8.43□□□□□ -1.06
VPS13D-207ENST00000476169 NLRP6P59044 892 aa8.42□□□□□ -1.06
VPS13D-207ENST00000476169 EFCAB3Q8N7B9 438 aa8.42□□□□□ -1.06
VPS13D-207ENST00000476169 KCNV2Q8TDN2 545 aa8.41□□□□□ -1.06
VPS13D-207ENST00000476169 SOX12O15370 315 aa8.4□□□□□ -1.06
VPS13D-207ENST00000476169 FBXO22Q8NEZ5 403 aa8.39□□□□□ -1.07
VPS13D-207ENST00000476169 ZRANB1Q9UGI0 708 aa8.39□□□□□ -1.07
VPS13D-207ENST00000476169 PPP1R37O75864 691 aa8.38□□□□□ -1.07
VPS13D-207ENST00000476169 PHF8Q9UPP1 1060 aa8.38□□□□□ -1.07
VPS13D-207ENST00000476169 CD44P16070 742 aaKnown RBP8.37□□□□□ -1.07
VPS13D-207ENST00000476169 PHF12Q96QT6 1004 aa8.36□□□□□ -1.07
VPS13D-207ENST00000476169 GOLGA2Q08379 1002 aa8.32□□□□□ -1.08
VPS13D-207ENST00000476169 LMOD2Q6P5Q4 547 aa8.31□□□□□ -1.08
VPS13D-207ENST00000476169 TULP1O00294 542 aaPredicted RBP8.3□□□□□ -1.08
VPS13D-207ENST00000476169 E2F4Q16254 413 aa8.3□□□□□ -1.08
VPS13D-207ENST00000476169 ARHGEF1Q92888 912 aaKnown RBP8.3□□□□□ -1.08
VPS13D-207ENST00000476169 TMEM106CQ9BVX2 250 aa8.3□□□□□ -1.08
VPS13D-207ENST00000476169 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.29□□□□□ -1.08
VPS13D-207ENST00000476169 MS4A4AQ96JQ5 239 aa8.28□□□□□ -1.08
VPS13D-207ENST00000476169 PDE4AP27815 886 aa8.26□□□□□ -1.09
VPS13D-207ENST00000476169 MS4A3Q96HJ5 214 aa8.26□□□□□ -1.09
VPS13D-207ENST00000476169 LARP6Q9BRS8 491 aaKnown RBP8.26□□□□□ -1.09
VPS13D-207ENST00000476169 NCKAP5LQ9HCH0 1330 aa8.26□□□□□ -1.09
VPS13D-207ENST00000476169 MKRN3Q13064 507 aaKnown RBP8.25□□□□□ -1.09
VPS13D-207ENST00000476169 TRPC6Q9Y210 931 aa8.24□□□□□ -1.09
VPS13D-207ENST00000476169 C19orf67A6NJJ6 358 aa8.22□□□□□ -1.09
VPS13D-207ENST00000476169 MFSD10Q14728 455 aa8.22□□□□□ -1.09
VPS13D-207ENST00000476169 DDX27Q96GQ7 796 aaKnown RBP8.22□□□□□ -1.09
VPS13D-207ENST00000476169 CRISPLD2Q9H0B8 497 aa8.22□□□□□ -1.09
VPS13D-207ENST00000476169 TESPA1A2RU30 521 aaPredicted RBP8.21□□□□□ -1.1
VPS13D-207ENST00000476169 SEMA3EO15041 775 aa8.21□□□□□ -1.1
VPS13D-207ENST00000476169 TIE1P35590 1138 aa8.19□□□□□ -1.1
VPS13D-207ENST00000476169 TTLL13PA6NNM8 815 aa8.18□□□□□ -1.1
VPS13D-207ENST00000476169 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.18□□□□□ -1.17e-10■■■■■ 40.1
VPS13D-207ENST00000476169 SMYD5Q6GMV2 418 aa8.17□□□□□ -1.1
VPS13D-207ENST00000476169 ZC3H15Q8WU90 426 aaKnown RBP8.17□□□□□ -1.1
VPS13D-207ENST00000476169 TIMELESSQ9UNS1 1208 aa8.17□□□□□ -1.1
VPS13D-207ENST00000476169 TMEM132AQ24JP5 1023 aa8.16□□□□□ -1.1
VPS13D-207ENST00000476169 BMP2KQ9NSY1 1161 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-207ENST00000476169 ARIH1Q9Y4X5 557 aaPredicted RBP8.15□□□□□ -1.1
VPS13D-207ENST00000476169 CAMK2BQ13554 666 aa8.14□□□□□ -1.11
VPS13D-207ENST00000476169 ILDR1Q86SU0 546 aaPredicted RBP8.13□□□□□ -1.11
VPS13D-207ENST00000476169 TRIM35Q9UPQ4 493 aa8.13□□□□□ -1.11
VPS13D-207ENST00000476169 GTF3C3Q9Y5Q9 886 aa8.13□□□□□ -1.11
VPS13D-207ENST00000476169 PPP1R15BQ5SWA1 713 aa8.12□□□□□ -1.11
VPS13D-207ENST00000476169 GPHNQ9NQX3 736 aaPredicted RBP8.11□□□□□ -1.11
VPS13D-207ENST00000476169 GALR2O43603 387 aaPredicted RBP8.1□□□□□ -1.11
VPS13D-207ENST00000476169 BRPF1P55201 1214 aaPredicted RBP8.09□□□□□ -1.11
VPS13D-207ENST00000476169 SLC24A3Q9HC58 644 aa8.09□□□□□ -1.11
VPS13D-207ENST00000476169 DPY19L2Q6NUT2 758 aa8.08□□□□□ -1.12
VPS13D-207ENST00000476169 MICALL2Q8IY33 904 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms