RNA–Protein interactions for RNA: ENST00000475329.5

TRAF4-210, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-210ENST00000475329 ARAP1Q96P48 1450 aa21.69■■□□□ 1.06
TRAF4-210ENST00000475329 EFCAB5A4FU69 1503 aa21.69■■□□□ 1.06
TRAF4-210ENST00000475329 RANGAP1P46060 587 aaPredicted RBP21.68■■□□□ 1.06
TRAF4-210ENST00000475329 ARHGAP35Q9NRY4 1499 aa21.68■■□□□ 1.06
TRAF4-210ENST00000475329 VPS8Q8N3P4 1428 aa21.67■■□□□ 1.06
TRAF4-210ENST00000475329 IQGAP2Q13576 1575 aa21.65■■□□□ 1.06
TRAF4-210ENST00000475329 SAMD9Q5K651 1589 aa21.61■■□□□ 1.05
TRAF4-210ENST00000475329 CHD1O14646 1710 aa21.61■■□□□ 1.05
TRAF4-210ENST00000475329 CEP170Q5SW79 1584 aa21.58■■□□□ 1.05
TRAF4-210ENST00000475329 CHMP7Q8WUX9 453 aaPredicted RBP21.56■■□□□ 1.04
TRAF4-210ENST00000475329 KIAA0586Q9BVV6 1533 aa21.55■■□□□ 1.04
TRAF4-210ENST00000475329 NUP160Q12769 1436 aa21.53■■□□□ 1.04
TRAF4-210ENST00000475329 UGGT2Q9NYU1 1516 aa21.52■■□□□ 1.04
TRAF4-210ENST00000475329 FHOD3Q2V2M9 1422 aa21.48■■□□□ 1.03
TRAF4-210ENST00000475329 FBLN2P98095 1184 aa21.48■■□□□ 1.03
TRAF4-210ENST00000475329 PCF11O94913 1555 aaKnown RBP21.46■■□□□ 1.03
TRAF4-210ENST00000475329 KIAA0556O60303 1618 aa21.44■■□□□ 1.02
TRAF4-210ENST00000475329 FMN1Q68DA7 1419 aa21.41■■□□□ 1.02
TRAF4-210ENST00000475329 P3H3Q8IVL6 736 aa21.41■■□□□ 1.02
TRAF4-210ENST00000475329 APLP2Q06481 763 aa21.4■■□□□ 1.02
TRAF4-210ENST00000475329 CFAP43Q8NDM7 1665 aa21.4■■□□□ 1.02
TRAF4-210ENST00000475329 FYCO1Q9BQS8 1478 aa21.39■■□□□ 1.02
TRAF4-210ENST00000475329 DISP1Q96F81 1524 aa21.37■■□□□ 1.01
TRAF4-210ENST00000475329 TRIM26Q12899 539 aaPredicted RBP21.36■■□□□ 1.01
TRAF4-210ENST00000475329 CASKIN1Q8WXD9 1431 aa21.36■■□□□ 1.01
TRAF4-210ENST00000475329 MAP3K1Q13233 1512 aa21.35■■□□□ 1.01
TRAF4-210ENST00000475329 PPARGC1BQ86YN6 1023 aaKnown RBP21.35■■□□□ 1.01
TRAF4-210ENST00000475329 TIAM1Q13009 1591 aa21.34■■□□□ 1.01
TRAF4-210ENST00000475329 SHROOM2Q13796 1616 aa21.33■■□□□ 1
TRAF4-210ENST00000475329 LRRIQ1Q96JM4 1722 aa21.31■■□□□ 1
TRAF4-210ENST00000475329 CARMIL2Q6F5E8 1435 aa21.29■■□□□ 1
TRAF4-210ENST00000475329 CLASP1Q7Z460 1538 aa21.29■■□□□ 1
TRAF4-210ENST00000475329 HECW1Q76N89 1606 aa21.29■■□□□ 1
TRAF4-210ENST00000475329 PCGF6Q9BYE7 350 aa21.27■■□□□ 1
TRAF4-210ENST00000475329 JPH4Q96JJ6 628 aa21.26■□□□□ 0.99
TRAF4-210ENST00000475329 TTBK1Q5TCY1 1321 aaPredicted RBP21.24■□□□□ 0.99
TRAF4-210ENST00000475329 RAPGEF6Q8TEU7 1601 aa21.23■□□□□ 0.99
TRAF4-210ENST00000475329 CCDC18Q5T9S5 1454 aa21.2■□□□□ 0.98
TRAF4-210ENST00000475329 PRG4Q92954 1404 aaPredicted RBP21.2■□□□□ 0.98
TRAF4-210ENST00000475329 ATP1B4Q9UN42 357 aaPredicted RBP21.19■□□□□ 0.98
TRAF4-210ENST00000475329 LRRC9Q6ZRR7 1453 aa21.19■□□□□ 0.98
TRAF4-210ENST00000475329 KANK4Q5T7N3 995 aaPredicted RBP21.16■□□□□ 0.98
TRAF4-210ENST00000475329 OSCARQ8IYS5 282 aa21.12■□□□□ 0.97
TRAF4-210ENST00000475329 EPRSP07814 1512 aaKnown RBP21.12■□□□□ 0.97
TRAF4-210ENST00000475329 ABCA8O94911 1581 aa21.11■□□□□ 0.97
TRAF4-210ENST00000475329 EHBP1L1Q8N3D4 1523 aa21.11■□□□□ 0.97
TRAF4-210ENST00000475329 NUP153P49790 1475 aaKnown RBP21.09■□□□□ 0.97
TRAF4-210ENST00000475329 ERCC6L2Q5T890 1561 aa21.09■□□□□ 0.97
TRAF4-210ENST00000475329 CDK13Q14004 1512 aaKnown RBP21.08■□□□□ 0.96
TRAF4-210ENST00000475329 PLB1Q6P1J6 1458 aa21.07■□□□□ 0.96
TRAF4-210ENST00000475329 SUPT6HQ7KZ85 1726 aaKnown RBP21.07■□□□□ 0.96
TRAF4-210ENST00000475329 PTPRGP23470 1445 aa21.04■□□□□ 0.96
TRAF4-210ENST00000475329 MTUS2Q5JR59 1369 aa21.04■□□□□ 0.96
TRAF4-210ENST00000475329 MAGI3Q5TCQ9 1506 aa21.02■□□□□ 0.96
TRAF4-210ENST00000475329 RRBP1Q9P2E9 1410 aaKnown RBP21■□□□□ 0.95
TRAF4-210ENST00000475329 UACAQ9BZF9 1416 aa20.95■□□□□ 0.94
TRAF4-210ENST00000475329 NCOA2Q15596 1464 aa20.94■□□□□ 0.94
TRAF4-210ENST00000475329 ABCC2Q92887 1545 aa20.94■□□□□ 0.94
TRAF4-210ENST00000475329 PHLDB1Q86UU1 1377 aa20.94■□□□□ 0.94
TRAF4-210ENST00000475329 ARHGEF11O15085 1522 aa20.94■□□□□ 0.94
TRAF4-210ENST00000475329 ADCY10Q96PN6 1610 aa20.93■□□□□ 0.94
TRAF4-210ENST00000475329 ARID3CA6NKF2 412 aa20.92■□□□□ 0.94
TRAF4-210ENST00000475329 CCNB3Q8WWL7 1395 aa20.91■□□□□ 0.94
TRAF4-210ENST00000475329 CDK11AQ9UQ88 783 aaPredicted RBP20.9■□□□□ 0.94
TRAF4-210ENST00000475329 ATP10BO94823 1461 aa20.89■□□□□ 0.94
TRAF4-210ENST00000475329 UHRF1BP1LA0JNW5 1464 aa20.88■□□□□ 0.93
TRAF4-210ENST00000475329 TROQ12816 1431 aaPredicted RBP20.88■□□□□ 0.93
TRAF4-210ENST00000475329 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.87■□□□□ 0.93
TRAF4-210ENST00000475329 HNRNPUL2Q1KMD3 747 aaKnown RBP20.87■□□□□ 0.93
TRAF4-210ENST00000475329 MYOM3Q5VTT5 1437 aa20.86■□□□□ 0.93
TRAF4-210ENST00000475329 ITSN2Q9NZM3 1697 aa20.85■□□□□ 0.93
TRAF4-210ENST00000475329 FGD6Q6ZV73 1430 aa20.85■□□□□ 0.93
TRAF4-210ENST00000475329 KIF14Q15058 1648 aa20.85■□□□□ 0.93
TRAF4-210ENST00000475329 ZCCHC11Q5TAX3 1644 aaKnown RBP20.85■□□□□ 0.93
TRAF4-210ENST00000475329 PTPN23Q9H3S7 1636 aa20.82■□□□□ 0.92
TRAF4-210ENST00000475329 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.8■□□□□ 0.921e-7■■□□□ 12.7
TRAF4-210ENST00000475329 KDM5BQ9UGL1 1544 aa20.78■□□□□ 0.92
TRAF4-210ENST00000475329 CDC42BPAQ5VT25 1732 aa20.76■□□□□ 0.91
TRAF4-210ENST00000475329 PLEKHD1A6NEE1 506 aa20.76■□□□□ 0.91
TRAF4-210ENST00000475329 MIA2Q96PC5 1412 aa20.75■□□□□ 0.91
TRAF4-210ENST00000475329 TCOF1Q13428 1488 aaKnown RBP20.75■□□□□ 0.91
TRAF4-210ENST00000475329 FAM50AQ14320 339 aaKnown RBP20.74■□□□□ 0.91
TRAF4-210ENST00000475329 ABCC10Q5T3U5 1492 aa20.71■□□□□ 0.91
TRAF4-210ENST00000475329 RIMBP3CA6NJZ7 1639 aa20.68■□□□□ 0.9
TRAF4-210ENST00000475329 RIMBP3BA6NNM3 1639 aa20.68■□□□□ 0.9
TRAF4-210ENST00000475329 RIMBP3Q9UFD9 1639 aa20.68■□□□□ 0.9
TRAF4-210ENST00000475329 PREX2Q70Z35 1606 aa20.67■□□□□ 0.9
TRAF4-210ENST00000475329 MYO5CQ9NQX4 1742 aa20.67■□□□□ 0.9
TRAF4-210ENST00000475329 GPATCH8Q9UKJ3 1502 aaKnown RBP20.67■□□□□ 0.9
TRAF4-210ENST00000475329 TTC37Q6PGP7 1564 aa20.65■□□□□ 0.9
TRAF4-210ENST00000475329 ITGAEP38570 1179 aa20.64■□□□□ 0.89
TRAF4-210ENST00000475329 CDC42BPBQ9Y5S2 1711 aa20.64■□□□□ 0.89
TRAF4-210ENST00000475329 DNMT1P26358 1616 aaKnown RBP20.63■□□□□ 0.89
TRAF4-210ENST00000475329 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.63■□□□□ 0.894e-7■□□□□ 9
TRAF4-210ENST00000475329 HRCP23327 699 aa20.62■□□□□ 0.89
TRAF4-210ENST00000475329 CAMSAP2Q08AD1 1489 aa20.61■□□□□ 0.89
TRAF4-210ENST00000475329 WDR7Q9Y4E6 1490 aa20.6■□□□□ 0.89
TRAF4-210ENST00000475329 CROCC2H7BZ55 1655 aa20.6■□□□□ 0.89
TRAF4-210ENST00000475329 CFDP1Q9UEE9 299 aaPredicted RBP20.57■□□□□ 0.88
TRAF4-210ENST00000475329 GCC2Q8IWJ2 1684 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms