RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TRHP20396 242 aaPredicted RBP24.47■■□□□ 1.51
UPF3A-204ENST00000475218 JPH4Q96JJ6 628 aa24.47■■□□□ 1.51
UPF3A-204ENST00000475218 KIAA0586Q9BVV6 1533 aa24.42■■□□□ 1.5
UPF3A-204ENST00000475218 CARMIL1Q5VZK9 1371 aa24.41■■□□□ 1.5
UPF3A-204ENST00000475218 ADCY10Q96PN6 1610 aa24.23■■□□□ 1.47
UPF3A-204ENST00000475218 RAPGEF2Q9Y4G8 1499 aa24.22■■□□□ 1.47
UPF3A-204ENST00000475218 IQGAP2Q13576 1575 aa24.22■■□□□ 1.47
UPF3A-204ENST00000475218 KIF13AQ9H1H9 1805 aa24.17■■□□□ 1.46
UPF3A-204ENST00000475218 DISP1Q96F81 1524 aa24.14■■□□□ 1.46
UPF3A-204ENST00000475218 MAPKBP1O60336 1514 aa24.11■■□□□ 1.45
UPF3A-204ENST00000475218 PTPRGP23470 1445 aa24.11■■□□□ 1.45
UPF3A-204ENST00000475218 UGGT2Q9NYU1 1516 aa24.1■■□□□ 1.45
UPF3A-204ENST00000475218 TNIKQ9UKE5 1360 aa24.09■■□□□ 1.45
UPF3A-204ENST00000475218 PRXQ9BXM0 1461 aa24.09■■□□□ 1.45
UPF3A-204ENST00000475218 CARMIL2Q6F5E8 1435 aa24.09■■□□□ 1.45
UPF3A-204ENST00000475218 ABCC10Q5T3U5 1492 aa24.05■■□□□ 1.44
UPF3A-204ENST00000475218 CTTNBP2Q8WZ74 1663 aa24.04■■□□□ 1.44
UPF3A-204ENST00000475218 DIP2BQ9P265 1576 aa24.03■■□□□ 1.44
UPF3A-204ENST00000475218 TTBK1Q5TCY1 1321 aaPredicted RBP24.03■■□□□ 1.44
UPF3A-204ENST00000475218 KIAA0556O60303 1618 aa24.02■■□□□ 1.44
UPF3A-204ENST00000475218 NPM1P06748 294 aaKnown RBP eCLIP24.01■■□□□ 1.43
UPF3A-204ENST00000475218 ABCC2Q92887 1545 aa23.98■■□□□ 1.43
UPF3A-204ENST00000475218 UHRF1BP1LA0JNW5 1464 aa23.98■■□□□ 1.43
UPF3A-204ENST00000475218 FAM69CQ0P6D2 419 aa23.96■■□□□ 1.43
UPF3A-204ENST00000475218 UACAQ9BZF9 1416 aa23.95■■□□□ 1.43
UPF3A-204ENST00000475218 CSRNP3Q8WYN3 585 aa23.89■■□□□ 1.42
UPF3A-204ENST00000475218 KDM5BQ9UGL1 1544 aa23.88■■□□□ 1.41
UPF3A-204ENST00000475218 ASXL2Q76L83 1435 aa23.88■■□□□ 1.41
UPF3A-204ENST00000475218 GOLGA3Q08378 1498 aa23.84■■□□□ 1.41
UPF3A-204ENST00000475218 PLB1Q6P1J6 1458 aa23.84■■□□□ 1.41
UPF3A-204ENST00000475218 ZCCHC11Q5TAX3 1644 aaKnown RBP23.83■■□□□ 1.41
UPF3A-204ENST00000475218 EEA1Q15075 1411 aa23.82■■□□□ 1.4
UPF3A-204ENST00000475218 TSPOAP1O95153 1857 aa23.81■■□□□ 1.4
UPF3A-204ENST00000475218 ABCA8O94911 1581 aa23.81■■□□□ 1.4
UPF3A-204ENST00000475218 GLI2P10070 1586 aa23.79■■□□□ 1.4
UPF3A-204ENST00000475218 PPRC1Q5VV67 1664 aaKnown RBP23.77■■□□□ 1.4
UPF3A-204ENST00000475218 EPRSP07814 1512 aaKnown RBP23.75■■□□□ 1.39
UPF3A-204ENST00000475218 SAMD9Q5K651 1589 aa23.74■■□□□ 1.39
UPF3A-204ENST00000475218 FAM9AQ8IZU1 332 aaPredicted RBP23.73■■□□□ 1.39
UPF3A-204ENST00000475218 CHIC1Q5VXU3 224 aa23.73■■□□□ 1.39
UPF3A-204ENST00000475218 P3H3Q8IVL6 736 aa23.7■■□□□ 1.38
UPF3A-204ENST00000475218 KDM6BO15054 1643 aa23.69■■□□□ 1.38
UPF3A-204ENST00000475218 MAP3K4Q9Y6R4 1608 aa23.69■■□□□ 1.38
UPF3A-204ENST00000475218 KIF21BO75037 1637 aa23.68■■□□□ 1.38
UPF3A-204ENST00000475218 WDR7Q9Y4E6 1490 aa23.68■■□□□ 1.38
UPF3A-204ENST00000475218 ATP10BO94823 1461 aa23.59■■□□□ 1.37
UPF3A-204ENST00000475218 COL17A1Q9UMD9 1497 aaPredicted RBP23.59■■□□□ 1.37
UPF3A-204ENST00000475218 FHOD3Q2V2M9 1422 aa23.56■■□□□ 1.36
UPF3A-204ENST00000475218 RAPGEF6Q8TEU7 1601 aa23.56■■□□□ 1.36
UPF3A-204ENST00000475218 ARID3CA6NKF2 412 aa23.55■■□□□ 1.36
UPF3A-204ENST00000475218 RANGAP1P46060 587 aaPredicted RBP23.55■■□□□ 1.36
UPF3A-204ENST00000475218 CFAP43Q8NDM7 1665 aa23.52■■□□□ 1.36
UPF3A-204ENST00000475218 NUP153P49790 1475 aaKnown RBP23.51■■□□□ 1.35
UPF3A-204ENST00000475218 TEX14Q8IWB6 1497 aa23.51■■□□□ 1.35
UPF3A-204ENST00000475218 KCNH8Q96L42 1107 aa23.5■■□□□ 1.35
UPF3A-204ENST00000475218 EFCAB5A4FU69 1503 aa23.49■■□□□ 1.35
UPF3A-204ENST00000475218 AEBP2Q6ZN18 517 aaPredicted RBP23.49■■□□□ 1.35
UPF3A-204ENST00000475218 CD109Q6YHK3 1445 aa23.48■■□□□ 1.35
UPF3A-204ENST00000475218 MAGI3Q5TCQ9 1506 aa23.48■■□□□ 1.35
UPF3A-204ENST00000475218 EHMT2Q96KQ7 1210 aa23.47■■□□□ 1.35
UPF3A-204ENST00000475218 ABCA9Q8IUA7 1624 aa23.42■■□□□ 1.34
UPF3A-204ENST00000475218 KDM4FA0A1W2PPD8 638 aa23.41■■□□□ 1.34
UPF3A-204ENST00000475218 UBTFP17480 764 aaKnown RBP23.39■■□□□ 1.33
UPF3A-204ENST00000475218 ARHGAP35Q9NRY4 1499 aa23.38■■□□□ 1.33
UPF3A-204ENST00000475218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.32■■□□□ 1.32
UPF3A-204ENST00000475218 HNRNPUL2Q1KMD3 747 aaKnown RBP23.32■■□□□ 1.32
UPF3A-204ENST00000475218 CDK13Q14004 1512 aaKnown RBP23.31■■□□□ 1.32
UPF3A-204ENST00000475218 ARAP3Q8WWN8 1544 aa23.3■■□□□ 1.32
UPF3A-204ENST00000475218 ADGRL1O94910 1474 aa23.25■■□□□ 1.31
UPF3A-204ENST00000475218 FMN1Q68DA7 1419 aa23.25■■□□□ 1.31
UPF3A-204ENST00000475218 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.24■■□□□ 1.31
UPF3A-204ENST00000475218 PLEKHD1A6NEE1 506 aa23.24■■□□□ 1.31
UPF3A-204ENST00000475218 TTC37Q6PGP7 1564 aa23.22■■□□□ 1.31
UPF3A-204ENST00000475218 NEO1Q92859 1461 aa23.22■■□□□ 1.31
UPF3A-204ENST00000475218 HECW1Q76N89 1606 aa23.21■■□□□ 1.31
UPF3A-204ENST00000475218 LRRIQ1Q96JM4 1722 aa23.21■■□□□ 1.31
UPF3A-204ENST00000475218 FRMPD1Q5SYB0 1578 aa23.2■■□□□ 1.3
UPF3A-204ENST00000475218 PHLDB1Q86UU1 1377 aa23.2■■□□□ 1.3
UPF3A-204ENST00000475218 RAPGEF3O95398 923 aa23.16■■□□□ 1.3
UPF3A-204ENST00000475218 FANCAO15360 1455 aa23.12■■□□□ 1.29
UPF3A-204ENST00000475218 ATP1B4Q9UN42 357 aaPredicted RBP23.12■■□□□ 1.29
UPF3A-204ENST00000475218 PCF11O94913 1555 aaKnown RBP23.11■■□□□ 1.29
UPF3A-204ENST00000475218 KIF14Q15058 1648 aa23.1■■□□□ 1.29
UPF3A-204ENST00000475218 RICTORQ6R327 1708 aa23.1■■□□□ 1.29
UPF3A-204ENST00000475218 AKNAQ7Z591 1439 aa23.1■■□□□ 1.29
UPF3A-204ENST00000475218 CFAP74Q9C0B2 1584 aa23.07■■□□□ 1.28
UPF3A-204ENST00000475218 CASKIN1Q8WXD9 1431 aa23.07■■□□□ 1.28
UPF3A-204ENST00000475218 PLCH2O75038 1416 aa23.06■■□□□ 1.28
UPF3A-204ENST00000475218 TROQ12816 1431 aaPredicted RBP23.06■■□□□ 1.28
UPF3A-204ENST00000475218 DENND4BO75064 1496 aaPredicted RBP23.05■■□□□ 1.28
UPF3A-204ENST00000475218 CLIP1P30622 1438 aa23.05■■□□□ 1.28
UPF3A-204ENST00000475218 MYO5CQ9NQX4 1742 aa23.02■■□□□ 1.27
UPF3A-204ENST00000475218 CDK11AQ9UQ88 783 aaPredicted RBP23■■□□□ 1.27
UPF3A-204ENST00000475218 ZMYM4Q5VZL5 1548 aa23■■□□□ 1.27
UPF3A-204ENST00000475218 ARHGEF40Q8TER5 1519 aa23■■□□□ 1.27
UPF3A-204ENST00000475218 FYCO1Q9BQS8 1478 aa22.99■■□□□ 1.27
UPF3A-204ENST00000475218 CCDC18Q5T9S5 1454 aa22.99■■□□□ 1.27
UPF3A-204ENST00000475218 ADAMTSL3P82987 1691 aa22.97■■□□□ 1.27
UPF3A-204ENST00000475218 SIGLEC1Q9BZZ2 1709 aa22.96■■□□□ 1.27
UPF3A-204ENST00000475218 SCAPERQ9BY12 1400 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms