RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 LRRC9Q6ZRR7 1453 aa8.68□□□□□ -1.02
HERC4-209ENST00000473533 EFCAB5A4FU69 1503 aa8.68□□□□□ -1.02
HERC4-209ENST00000473533 CCER2I3L3R5 266 aa8.67□□□□□ -1.02
HERC4-209ENST00000473533 AQRO60306 1485 aaKnown RBP eCLIP8.66□□□□□ -1.021e-10■□□□□ 10.5
HERC4-209ENST00000473533 MAPKBP1O60336 1514 aa8.66□□□□□ -1.02
HERC4-209ENST00000473533 CARMIL1Q5VZK9 1371 aa8.65□□□□□ -1.02
HERC4-209ENST00000473533 IGF1RP08069 1367 aa8.65□□□□□ -1.03
HERC4-209ENST00000473533 FYCO1Q9BQS8 1478 aa8.65□□□□□ -1.03
HERC4-209ENST00000473533 ANP32CO43423 234 aa8.63□□□□□ -1.03
HERC4-209ENST00000473533 ANP32EQ9BTT0 268 aa8.62□□□□□ -1.03
HERC4-209ENST00000473533 CC2D2AQ9P2K1 1620 aa8.62□□□□□ -1.03
HERC4-209ENST00000473533 CADPSQ9ULU8 1353 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 ITGAEP38570 1179 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 TSHZ2Q9NRE2 1034 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 CUL7Q14999 1698 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 FGD5Q6ZNL6 1462 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 FMN1Q68DA7 1419 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 CASKIN1Q8WXD9 1431 aa8.61□□□□□ -1.03
HERC4-209ENST00000473533 FAM50AQ14320 339 aaKnown RBP8.6□□□□□ -1.03
HERC4-209ENST00000473533 PCF11O94913 1555 aaKnown RBP8.59□□□□□ -1.03
HERC4-209ENST00000473533 TONSLQ96HA7 1378 aa8.59□□□□□ -1.03
HERC4-209ENST00000473533 WDR97A6NE52 1622 aa8.59□□□□□ -1.04
HERC4-209ENST00000473533 PHLDB1Q86UU1 1377 aa8.59□□□□□ -1.04
HERC4-209ENST00000473533 THOC2Q8NI27 1593 aaKnown RBP8.58□□□□□ -1.04
HERC4-209ENST00000473533 PPP1R15AO75807 674 aaPredicted RBP8.57□□□□□ -1.04
HERC4-209ENST00000473533 ERICH6BQ5W0A0 696 aa8.57□□□□□ -1.04
HERC4-209ENST00000473533 DNMBPQ6XZF7 1577 aa8.56□□□□□ -1.04
HERC4-209ENST00000473533 DDX10Q13206 875 aaKnown RBP8.56□□□□□ -1.04
HERC4-209ENST00000473533 CTTNBP2Q8WZ74 1663 aa8.56□□□□□ -1.04
HERC4-209ENST00000473533 UACAQ9BZF9 1416 aa8.56□□□□□ -1.04
HERC4-209ENST00000473533 FKBP8Q14318 412 aa8.56□□□□□ -1.04
HERC4-209ENST00000473533 ABCA10Q8WWZ4 1543 aa8.56□□□□□ -1.04
HERC4-209ENST00000473533 FGD6Q6ZV73 1430 aa8.55□□□□□ -1.04
HERC4-209ENST00000473533 KIF21AQ7Z4S6 1674 aa8.54□□□□□ -1.04
HERC4-209ENST00000473533 HFM1A2PYH4 1435 aa8.54□□□□□ -1.04
HERC4-209ENST00000473533 CCDC18Q5T9S5 1454 aa8.54□□□□□ -1.04
HERC4-209ENST00000473533 MYT1LQ9UL68 1186 aa8.53□□□□□ -1.04
HERC4-209ENST00000473533 MTUS2Q5JR59 1369 aa8.53□□□□□ -1.04
HERC4-209ENST00000473533 EHBP1L1Q8N3D4 1523 aa8.52□□□□□ -1.05
HERC4-209ENST00000473533 FANCD2Q9BXW9 1451 aa8.52□□□□□ -1.05
HERC4-209ENST00000473533 SUPT6HQ7KZ85 1726 aaKnown RBP8.51□□□□□ -1.05
HERC4-209ENST00000473533 PTPN23Q9H3S7 1636 aa8.51□□□□□ -1.05
HERC4-209ENST00000473533 SIN3AQ96ST3 1273 aa8.51□□□□□ -1.05
HERC4-209ENST00000473533 AKNAQ7Z591 1439 aa8.5□□□□□ -1.05
HERC4-209ENST00000473533 FHOD3Q2V2M9 1422 aa8.5□□□□□ -1.05
HERC4-209ENST00000473533 ATP1B4Q9UN42 357 aaPredicted RBP8.5□□□□□ -1.05
HERC4-209ENST00000473533 MYOM3Q5VTT5 1437 aa8.5□□□□□ -1.05
HERC4-209ENST00000473533 CDK11AQ9UQ88 783 aaPredicted RBP8.48□□□□□ -1.05
HERC4-209ENST00000473533 SAMD9Q5K651 1589 aa8.48□□□□□ -1.05
HERC4-209ENST00000473533 TOPBP1Q92547 1522 aa8.48□□□□□ -1.05
HERC4-209ENST00000473533 SNAPC4Q5SXM2 1469 aa8.47□□□□□ -1.05
HERC4-209ENST00000473533 BCANQ96GW7 911 aa8.47□□□□□ -1.05
HERC4-209ENST00000473533 POLA1P09884 1462 aaPredicted RBP8.47□□□□□ -1.05
HERC4-209ENST00000473533 HECW1Q76N89 1606 aa8.46□□□□□ -1.05
HERC4-209ENST00000473533 ERICH6Q7L0X2 663 aa8.46□□□□□ -1.05
HERC4-209ENST00000473533 RBM19Q9Y4C8 960 aaKnown RBP8.46□□□□□ -1.05
HERC4-209ENST00000473533 FANCIQ9NVI1 1328 aa8.46□□□□□ -1.06
HERC4-209ENST00000473533 NCOA2Q15596 1464 aa8.46□□□□□ -1.06
HERC4-209ENST00000473533 GCC2Q8IWJ2 1684 aa8.46□□□□□ -1.06
HERC4-209ENST00000473533 KCNH8Q96L42 1107 aa8.46□□□□□ -1.06
HERC4-209ENST00000473533 NAIPQ13075 1403 aa8.45□□□□□ -1.06
HERC4-209ENST00000473533 TCOF1Q13428 1488 aaKnown RBP8.45□□□□□ -1.06
HERC4-209ENST00000473533 GRIN2BQ13224 1484 aa8.44□□□□□ -1.06
HERC4-209ENST00000473533 EIF4G2P78344 907 aaKnown RBP eCLIP8.44□□□□□ -1.06
HERC4-209ENST00000473533 MIA2Q96PC5 1412 aa8.44□□□□□ -1.06
HERC4-209ENST00000473533 LAMC3Q9Y6N6 1575 aa8.44□□□□□ -1.06
HERC4-209ENST00000473533 UGGT2Q9NYU1 1516 aa8.44□□□□□ -1.06
HERC4-209ENST00000473533 P3H3Q8IVL6 736 aa8.43□□□□□ -1.06
HERC4-209ENST00000473533 TRIM52Q96A61 297 aa8.43□□□□□ -1.06
HERC4-209ENST00000473533 CNTLNQ9NXG0 1405 aa8.42□□□□□ -1.06
HERC4-209ENST00000473533 ARHGEF11O15085 1522 aa8.42□□□□□ -1.06
HERC4-209ENST00000473533 HNRNPUQ00839 825 aaKnown RBP eCLIP8.42□□□□□ -1.06
HERC4-209ENST00000473533 PPP4R2Q9NY27 417 aa8.42□□□□□ -1.06
HERC4-209ENST00000473533 ABCA5Q8WWZ7 1642 aa8.42□□□□□ -1.06
HERC4-209ENST00000473533 RAD54L2Q9Y4B4 1467 aa8.41□□□□□ -1.06
HERC4-209ENST00000473533 GAPVD1Q14C86 1478 aa8.39□□□□□ -1.07
HERC4-209ENST00000473533 ROCK1Q13464 1354 aa8.39□□□□□ -1.07
HERC4-209ENST00000473533 PDS5BQ9NTI5 1447 aa8.38□□□□□ -1.07
HERC4-209ENST00000473533 PTPRKQ15262 1439 aa8.38□□□□□ -1.07
HERC4-209ENST00000473533 HSPA5P11021 654 aaKnown RBP8.37□□□□□ -1.07
HERC4-209ENST00000473533 ZBED9Q6R2W3 1325 aa8.37□□□□□ -1.07
HERC4-209ENST00000473533 KDM5BQ9UGL1 1544 aa8.37□□□□□ -1.07
HERC4-209ENST00000473533 POLR1AO95602 1720 aaPredicted RBP8.37□□□□□ -1.07
HERC4-209ENST00000473533 NCOA1Q15788 1441 aa8.36□□□□□ -1.07
HERC4-209ENST00000473533 ARID4BQ4LE39 1312 aaPredicted RBP8.36□□□□□ -1.07
HERC4-209ENST00000473533 HIRIP3Q9BW71 556 aaPredicted RBP8.36□□□□□ -1.07
HERC4-209ENST00000473533 CCDC7Q96M83 1385 aa8.35□□□□□ -1.07
HERC4-209ENST00000473533 LRRIQ1Q96JM4 1722 aa8.35□□□□□ -1.07
HERC4-209ENST00000473533 NESP48681 1621 aa8.35□□□□□ -1.07
HERC4-209ENST00000473533 WASHC2AQ641Q2 1341 aa8.35□□□□□ -1.07
HERC4-209ENST00000473533 BCL11AQ9H165 835 aa8.35□□□□□ -1.07
HERC4-209ENST00000473533 RPRD2Q5VT52 1461 aaKnown RBP8.34□□□□□ -1.07
HERC4-209ENST00000473533 IQGAP2Q13576 1575 aa8.34□□□□□ -1.07
HERC4-209ENST00000473533 MPHOSPH9Q99550 1183 aa8.34□□□□□ -1.07
HERC4-209ENST00000473533 EPRSP07814 1512 aaKnown RBP8.33□□□□□ -1.08
HERC4-209ENST00000473533 URB2Q14146 1524 aaKnown RBP8.33□□□□□ -1.08
HERC4-209ENST00000473533 PRKRIP1Q9H875 184 aaPredicted RBP8.33□□□□□ -1.08
HERC4-209ENST00000473533 MRS2Q9HD23 443 aa8.33□□□□□ -1.08
HERC4-209ENST00000473533 ROCK2O75116 1388 aaKnown RBP8.33□□□□□ -1.08
HERC4-209ENST00000473533 DNMT1P26358 1616 aaKnown RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms