RNA–Protein interactions for RNA: ENST00000471246.1

UBXN4-207, Transcript of UBX domain protein 4, humanhuman

TSL 3

Gene UBXN4, Length 395 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-207ENST00000471246 SPNS2Q8IVW8 549 aa6.46□□□□□ -1.38
UBXN4-207ENST00000471246 ATXN8OSP0DMR3 200 aa6.45□□□□□ -1.38
UBXN4-207ENST00000471246 CREBZFQ9NS37 354 aa6.45□□□□□ -1.38
UBXN4-207ENST00000471246 POTEFA5A3E0 1075 aa6.43□□□□□ -1.38
UBXN4-207ENST00000471246 MS4A3Q96HJ5 214 aa6.41□□□□□ -1.38
UBXN4-207ENST00000471246 PAK3O75914 559 aaPredicted RBP6.39□□□□□ -1.39
UBXN4-207ENST00000471246 ZBTB22O15209 634 aa6.37□□□□□ -1.39
UBXN4-207ENST00000471246 ST18O60284 1047 aa6.37□□□□□ -1.39
UBXN4-207ENST00000471246 ATN1P54259 1190 aaPredicted RBP6.37□□□□□ -1.39
UBXN4-207ENST00000471246 SLC4A1APQ9BWU0 796 aaKnown RBP6.35□□□□□ -1.39
UBXN4-207ENST00000471246 COLQQ9Y215 455 aaPredicted RBP6.28□□□□□ -1.4
UBXN4-207ENST00000471246 MNX1P50219 401 aaPredicted RBP6.27□□□□□ -1.41
UBXN4-207ENST00000471246 BMP2KQ9NSY1 1161 aaPredicted RBP6.26□□□□□ -1.41
UBXN4-207ENST00000471246 TRPC6Q9Y210 931 aa6.25□□□□□ -1.41
UBXN4-207ENST00000471246 NPM1P06748 294 aaKnown RBP eCLIP6.24□□□□□ -1.41
UBXN4-207ENST00000471246 SLAIN1Q8ND83 568 aa6.24□□□□□ -1.41
UBXN4-207ENST00000471246 STAG3Q9UJ98 1225 aa6.21□□□□□ -1.42
UBXN4-207ENST00000471246 SEC24BO95487 1268 aa6.2□□□□□ -1.42
UBXN4-207ENST00000471246 MARVELD3Q96A59 401 aa6.19□□□□□ -1.42
UBXN4-207ENST00000471246 TMEM121BQ9BXQ6 578 aaPredicted RBP6.19□□□□□ -1.42
UBXN4-207ENST00000471246 KIF12Q96FN5 646 aa6.18□□□□□ -1.42
UBXN4-207ENST00000471246 TIE1P35590 1138 aa6.17□□□□□ -1.42
UBXN4-207ENST00000471246 KRTAP3-3Q9BYR6 98 aa6.17□□□□□ -1.42
UBXN4-207ENST00000471246 KRTAP3-2Q9BYR7 98 aa6.17□□□□□ -1.42
UBXN4-207ENST00000471246 CCDC61Q9Y6R9 512 aa6.17□□□□□ -1.42
UBXN4-207ENST00000471246 TSPYL2Q9H2G4 693 aaPredicted RBP6.15□□□□□ -1.42
UBXN4-207ENST00000471246 TTLL13PA6NNM8 815 aa6.14□□□□□ -1.43
UBXN4-207ENST00000471246 POTEB3A0JP26 581 aa6.13□□□□□ -1.43
UBXN4-207ENST00000471246 POTEBQ6S5H4 581 aa6.13□□□□□ -1.43
UBXN4-207ENST00000471246 MAP3K13O43283 966 aa6.11□□□□□ -1.43
UBXN4-207ENST00000471246 IER5LQ5T953 404 aa6.1□□□□□ -1.43
UBXN4-207ENST00000471246 TRIM35Q9UPQ4 493 aa6.09□□□□□ -1.43
UBXN4-207ENST00000471246 SNPHO15079 494 aa6.07□□□□□ -1.44
UBXN4-207ENST00000471246 HS3ST6Q96QI5 342 aa6.07□□□□□ -1.44
UBXN4-207ENST00000471246 EMP3P54852 163 aa6.05□□□□□ -1.44
UBXN4-207ENST00000471246 FAM205CA6NFA0 338 aa6.03□□□□□ -1.44
UBXN4-207ENST00000471246 PLCG2P16885 1265 aa6.01□□□□□ -1.45
UBXN4-207ENST00000471246 IRX5P78411 483 aaPredicted RBP6□□□□□ -1.45
UBXN4-207ENST00000471246 RNF166Q96A37 237 aaPredicted RBP6□□□□□ -1.45
UBXN4-207ENST00000471246 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.98□□□□□ -1.45
UBXN4-207ENST00000471246 RASEFQ8IZ41 740 aa5.94□□□□□ -1.46
UBXN4-207ENST00000471246 SPDYE4A6NLX3 237 aa5.93□□□□□ -1.46
UBXN4-207ENST00000471246 PCDHB13Q9Y5F0 798 aa5.93□□□□□ -1.46
UBXN4-207ENST00000471246 SGIP1Q9BQI5 828 aa5.92□□□□□ -1.46
UBXN4-207ENST00000471246 TMEM106CQ9BVX2 250 aa5.92□□□□□ -1.46
UBXN4-207ENST00000471246 OCEL1Q9H607 264 aa5.92□□□□□ -1.46
UBXN4-207ENST00000471246 MYT1LQ9UL68 1186 aa5.91□□□□□ -1.46
UBXN4-207ENST00000471246 IFNL1Q8IU54 200 aa5.9□□□□□ -1.46
UBXN4-207ENST00000471246 C3orf67Q6ZVT6 689 aa5.82□□□□□ -1.48
UBXN4-207ENST00000471246 HOXB3P14651 431 aaPredicted RBP5.81□□□□□ -1.48
UBXN4-207ENST00000471246 PDCD7Q8N8D1 485 aaKnown RBP5.81□□□□□ -1.48
UBXN4-207ENST00000471246 ERBB3P21860 1342 aa5.8□□□□□ -1.48
UBXN4-207ENST00000471246 HOXB1P14653 301 aaPredicted RBP5.8□□□□□ -1.48
UBXN4-207ENST00000471246 PLA2G2EQ9NZK7 142 aa5.77□□□□□ -1.49
UBXN4-207ENST00000471246 L3MBTL3Q96JM7 780 aaPredicted RBP5.76□□□□□ -1.49
UBXN4-207ENST00000471246 PTGER2P43116 358 aa5.75□□□□□ -1.49
UBXN4-207ENST00000471246 VARS2Q5ST30 1063 aaKnown RBP5.75□□□□□ -1.49
UBXN4-207ENST00000471246 NUBP1P53384 320 aa5.73□□□□□ -1.49
UBXN4-207ENST00000471246 MIER1Q8N108 512 aa5.73□□□□□ -1.49
UBXN4-207ENST00000471246 ZNF687Q8N1G0 1237 aa5.73□□□□□ -1.49
UBXN4-207ENST00000471246 ZNF710Q8N1W2 664 aa5.71□□□□□ -1.5
UBXN4-207ENST00000471246 PROM2Q8N271 834 aa5.71□□□□□ -1.5
UBXN4-207ENST00000471246 PLEKHG5O94827 1062 aa5.7□□□□□ -1.5
UBXN4-207ENST00000471246 ANKRD13DQ6ZTN6 518 aa5.68□□□□□ -1.5
UBXN4-207ENST00000471246 PCDHB8Q9UN66 801 aa5.68□□□□□ -1.5
UBXN4-207ENST00000471246 DOK7Q18PE1 504 aa5.66□□□□□ -1.5
UBXN4-207ENST00000471246 DPY19L2Q6NUT2 758 aa5.65□□□□□ -1.5
UBXN4-207ENST00000471246 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.65□□□□□ -1.56e-10■■■■□ 23
UBXN4-207ENST00000471246 MKRN3Q13064 507 aaKnown RBP5.64□□□□□ -1.51
UBXN4-207ENST00000471246 FAM212AQ96EL1 285 aa5.63□□□□□ -1.51
UBXN4-207ENST00000471246 PYGBP11216 843 aa5.62□□□□□ -1.51
UBXN4-207ENST00000471246 ILDR1Q86SU0 546 aaPredicted RBP5.62□□□□□ -1.51
UBXN4-207ENST00000471246 IRX2Q9BZI1 471 aaPredicted RBP5.62□□□□□ -1.51
UBXN4-207ENST00000471246 HCSTQ9UBK5 93 aa5.62□□□□□ -1.51
UBXN4-207ENST00000471246 LSM11P83369 360 aaKnown RBP eCLIP5.6□□□□□ -1.51
UBXN4-207ENST00000471246 RIMBP2O15034 1052 aa5.59□□□□□ -1.51
UBXN4-207ENST00000471246 GOLGA2Q08379 1002 aa5.59□□□□□ -1.51
UBXN4-207ENST00000471246 GPR153Q6NV75 609 aa5.59□□□□□ -1.51
UBXN4-207ENST00000471246 BOLA1Q9Y3E2 137 aa5.59□□□□□ -1.51
UBXN4-207ENST00000471246 PLCD3Q8N3E9 789 aa5.58□□□□□ -1.52
UBXN4-207ENST00000471246 ZSWIM6Q9HCJ5 1215 aa5.57□□□□□ -1.52
UBXN4-207ENST00000471246 ZBTB47Q9UFB7 747 aaPredicted RBP5.54□□□□□ -1.52
UBXN4-207ENST00000471246 G3V3G9 751 aa5.53□□□□□ -1.52
UBXN4-207ENST00000471246 RGS20O76081 388 aa5.53□□□□□ -1.52
UBXN4-207ENST00000471246 DCAF8Q5TAQ9 597 aa5.53□□□□□ -1.52
UBXN4-207ENST00000471246 POTEEQ6S8J3 1075 aa5.53□□□□□ -1.52
UBXN4-207ENST00000471246 ZNF316A6NFI3 1004 aaPredicted RBP5.51□□□□□ -1.53
UBXN4-207ENST00000471246 ARSIQ5FYB1 569 aa5.51□□□□□ -1.53
UBXN4-207ENST00000471246 TMEM92Q6UXU6 159 aa5.51□□□□□ -1.53
UBXN4-207ENST00000471246 EHMT2Q96KQ7 1210 aa5.51□□□□□ -1.53
UBXN4-207ENST00000471246 PSEN1P49768 467 aa5.49□□□□□ -1.53
UBXN4-207ENST00000471246 KHSRPQ92945 711 aaKnown RBP eCLIP5.49□□□□□ -1.537e-7■■□□□ 12.3
UBXN4-207ENST00000471246 ZNF467Q7Z7K2 595 aaPredicted RBP5.48□□□□□ -1.53
UBXN4-207ENST00000471246 AXIN2Q9Y2T1 843 aa5.48□□□□□ -1.53
UBXN4-207ENST00000471246 CSRNP3Q8WYN3 585 aa5.47□□□□□ -1.53
UBXN4-207ENST00000471246 PBX2P40425 430 aa5.46□□□□□ -1.54
UBXN4-207ENST00000471246 Q6ZNB5 142 aa5.45□□□□□ -1.54
UBXN4-207ENST00000471246 A0A0G2JS52 829 aa5.43□□□□□ -1.54
UBXN4-207ENST00000471246 IFFO2Q5TF58 517 aa5.43□□□□□ -1.54
UBXN4-207ENST00000471246 ADGRD1Q6QNK2 874 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms