RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 GSE1Q14687 1217 aa8.21□□□□□ -1.1
TMEM39A-204ENST00000468545 FAM212AQ96EL1 285 aa8.21□□□□□ -1.1
TMEM39A-204ENST00000468545 CIZ1Q9ULV3 898 aaPredicted RBP8.21□□□□□ -1.1
TMEM39A-204ENST00000468545 ECM2O94769 699 aaPredicted RBP8.19□□□□□ -1.1
TMEM39A-204ENST00000468545 RASEFQ8IZ41 740 aa8.18□□□□□ -1.1
TMEM39A-204ENST00000468545 ZNF579Q8NAF0 562 aaKnown RBP8.18□□□□□ -1.1
TMEM39A-204ENST00000468545 TRIM41Q8WV44 630 aa8.18□□□□□ -1.1
TMEM39A-204ENST00000468545 PAK3O75914 559 aaPredicted RBP8.17□□□□□ -1.1
TMEM39A-204ENST00000468545 DCAF8Q5TAQ9 597 aa8.16□□□□□ -1.1
TMEM39A-204ENST00000468545 CLCN6P51797 869 aa8.14□□□□□ -1.11
TMEM39A-204ENST00000468545 PHF12Q96QT6 1004 aa8.13□□□□□ -1.11
TMEM39A-204ENST00000468545 TSPYL2Q9H2G4 693 aaPredicted RBP8.1□□□□□ -1.11
TMEM39A-204ENST00000468545 RGL2O15211 777 aa8.09□□□□□ -1.11
TMEM39A-204ENST00000468545 DCAF8L2P0C7V8 631 aa8.09□□□□□ -1.11
TMEM39A-204ENST00000468545 POTEIP0CG38 1075 aa8.09□□□□□ -1.11
TMEM39A-204ENST00000468545 GALR2O43603 387 aaPredicted RBP8.08□□□□□ -1.12
TMEM39A-204ENST00000468545 CHRM1P11229 460 aaPredicted RBP8.08□□□□□ -1.12
TMEM39A-204ENST00000468545 DCBLD2Q96PD2 775 aa8.08□□□□□ -1.12
TMEM39A-204ENST00000468545 PYGBP11216 843 aa8.05□□□□□ -1.12
TMEM39A-204ENST00000468545 RNF25Q96BH1 459 aaPredicted RBP8.05□□□□□ -1.12
TMEM39A-204ENST00000468545 CCDC61Q9Y6R9 512 aa8.05□□□□□ -1.12
TMEM39A-204ENST00000468545 CCDC180Q9P1Z9 1646 aa8.03□□□□□ -1.12
TMEM39A-204ENST00000468545 RIOK3O14730 519 aaKnown RBP8.02□□□□□ -1.13
TMEM39A-204ENST00000468545 MS4A3Q96HJ5 214 aa8.01□□□□□ -1.13
TMEM39A-204ENST00000468545 TAOK2Q9UL54 1235 aa8.01□□□□□ -1.13
TMEM39A-204ENST00000468545 LHX8Q68G74 356 aa7.99□□□□□ -1.13
TMEM39A-204ENST00000468545 VGFO15240 615 aaPredicted RBP7.98□□□□□ -1.13
TMEM39A-204ENST00000468545 ZNF467Q7Z7K2 595 aaPredicted RBP7.98□□□□□ -1.13
TMEM39A-204ENST00000468545 KIF12Q96FN5 646 aa7.98□□□□□ -1.13
TMEM39A-204ENST00000468545 SGIP1Q9BQI5 828 aa7.96□□□□□ -1.14
TMEM39A-204ENST00000468545 CHGAP10645 457 aaKnown RBP7.95□□□□□ -1.14
TMEM39A-204ENST00000468545 HS6ST3Q8IZP7 471 aa7.95□□□□□ -1.14
TMEM39A-204ENST00000468545 MAP3K13O43283 966 aa7.94□□□□□ -1.14
TMEM39A-204ENST00000468545 PCDHB13Q9Y5F0 798 aa7.94□□□□□ -1.14
TMEM39A-204ENST00000468545 PELP1Q8IZL8 1130 aaKnown RBP7.92□□□□□ -1.14
TMEM39A-204ENST00000468545 BBXQ8WY36 941 aaPredicted RBP7.92□□□□□ -1.14
TMEM39A-204ENST00000468545 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 STK25O00506 426 aa7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 ATMINO43313 823 aaPredicted RBP7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 PDAP1Q13442 181 aaKnown RBP7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 ASTLQ6HA08 431 aaPredicted RBP7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 IFNL1Q8IU54 200 aa7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 ZFP91Q96JP5 570 aaPredicted RBP7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 PCDHB8Q9UN66 801 aa7.91□□□□□ -1.14
TMEM39A-204ENST00000468545 TRPC6Q9Y210 931 aa7.9□□□□□ -1.14
TMEM39A-204ENST00000468545 DNAJC5Q9H3Z4 198 aa7.89□□□□□ -1.15
TMEM39A-204ENST00000468545 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.89□□□□□ -1.15
TMEM39A-204ENST00000468545 BCL11BQ9C0K0 894 aaPredicted RBP7.88□□□□□ -1.15
TMEM39A-204ENST00000468545 PSEN1P49768 467 aa7.87□□□□□ -1.15
TMEM39A-204ENST00000468545 ATN1P54259 1190 aaPredicted RBP7.87□□□□□ -1.15
TMEM39A-204ENST00000468545 PLCB2Q00722 1185 aa7.87□□□□□ -1.15
TMEM39A-204ENST00000468545 BMP2KQ9NSY1 1161 aaPredicted RBP7.87□□□□□ -1.15
TMEM39A-204ENST00000468545 SLC24A1O60721 1099 aa7.86□□□□□ -1.15
TMEM39A-204ENST00000468545 STK24Q9Y6E0 443 aa7.86□□□□□ -1.15
TMEM39A-204ENST00000468545 ABCC9O60706 1549 aa7.85□□□□□ -1.15
TMEM39A-204ENST00000468545 SLC39A7Q92504 469 aa7.85□□□□□ -1.15
TMEM39A-204ENST00000468545 METRNQ9UJH8 293 aa7.85□□□□□ -1.15
TMEM39A-204ENST00000468545 C7P10643 843 aa7.84□□□□□ -1.15
TMEM39A-204ENST00000468545 TIE1P35590 1138 aa7.84□□□□□ -1.15
TMEM39A-204ENST00000468545 POTEB2H3BUK9 544 aa7.83□□□□□ -1.16
TMEM39A-204ENST00000468545 TTLL13PA6NNM8 815 aa7.82□□□□□ -1.16
TMEM39A-204ENST00000468545 NKX1-1Q15270 411 aaPredicted RBP7.8□□□□□ -1.16
TMEM39A-204ENST00000468545 PAXIP1Q6ZW49 1069 aaPredicted RBP7.8□□□□□ -1.16
TMEM39A-204ENST00000468545 SPRYD3Q8NCJ5 442 aa7.8□□□□□ -1.16
TMEM39A-204ENST00000468545 CFAP44Q96MT7 982 aa7.79□□□□□ -1.16
TMEM39A-204ENST00000468545 TMEM106CQ9BVX2 250 aa7.78□□□□□ -1.16
TMEM39A-204ENST00000468545 RYDENQ9NUL5 291 aaKnown RBP7.78□□□□□ -1.16
TMEM39A-204ENST00000468545 OTUD5Q96G74 571 aa7.77□□□□□ -1.17
TMEM39A-204ENST00000468545 CABP2Q9NPB3 220 aa7.77□□□□□ -1.17
TMEM39A-204ENST00000468545 TRIM35Q9UPQ4 493 aa7.77□□□□□ -1.17
TMEM39A-204ENST00000468545 POTEFA5A3E0 1075 aa7.74□□□□□ -1.17
TMEM39A-204ENST00000468545 GTPBP6O43824 516 aaPredicted RBP7.74□□□□□ -1.17
TMEM39A-204ENST00000468545 POTEJP0CG39 1038 aa7.74□□□□□ -1.17
TMEM39A-204ENST00000468545 HAP1P54257 671 aaPredicted RBP7.74□□□□□ -1.17
TMEM39A-204ENST00000468545 SEC24BO95487 1268 aa7.73□□□□□ -1.17
TMEM39A-204ENST00000468545 GOLGA2Q08379 1002 aa7.73□□□□□ -1.17
TMEM39A-204ENST00000468545 EFCAB3Q8N7B9 438 aa7.73□□□□□ -1.17
TMEM39A-204ENST00000468545 COLQQ9Y215 455 aaPredicted RBP7.73□□□□□ -1.17
TMEM39A-204ENST00000468545 SOX12O15370 315 aa7.72□□□□□ -1.17
TMEM39A-204ENST00000468545 MFRPQ9BY79 579 aa7.72□□□□□ -1.17
TMEM39A-204ENST00000468545 IER5LQ5T953 404 aa7.71□□□□□ -1.18
TMEM39A-204ENST00000468545 ZCCHC6Q5VYS8 1495 aaKnown RBP7.69□□□□□ -1.18
TMEM39A-204ENST00000468545 NLRP6P59044 892 aa7.69□□□□□ -1.18
TMEM39A-204ENST00000468545 MKRN3Q13064 507 aaKnown RBP7.69□□□□□ -1.18
TMEM39A-204ENST00000468545 MAMSTRQ6ZN01 415 aa7.69□□□□□ -1.18
TMEM39A-204ENST00000468545 FBXO22Q8NEZ5 403 aa7.68□□□□□ -1.18
TMEM39A-204ENST00000468545 PHF8Q9UPP1 1060 aa7.68□□□□□ -1.18
TMEM39A-204ENST00000468545 SCUBE2Q9NQ36 999 aa7.67□□□□□ -1.18
TMEM39A-204ENST00000468545 PLCG2P16885 1265 aa7.66□□□□□ -1.18
TMEM39A-204ENST00000468545 TSHZ2Q9NRE2 1034 aa7.65□□□□□ -1.18
TMEM39A-204ENST00000468545 IRX5P78411 483 aaPredicted RBP7.64□□□□□ -1.19
TMEM39A-204ENST00000468545 ILDR1Q86SU0 546 aaPredicted RBP7.64□□□□□ -1.19
TMEM39A-204ENST00000468545 VSIG10Q8N0Z9 540 aa7.64□□□□□ -1.19
TMEM39A-204ENST00000468545 MS4A4AQ96JQ5 239 aa7.63□□□□□ -1.19
TMEM39A-204ENST00000468545 OCEL1Q9H607 264 aa7.62□□□□□ -1.19
TMEM39A-204ENST00000468545 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.62□□□□□ -1.19
TMEM39A-204ENST00000468545 PPP1R37O75864 691 aa7.59□□□□□ -1.19
TMEM39A-204ENST00000468545 SHROOM4Q9ULL8 1493 aa7.58□□□□□ -1.2
TMEM39A-204ENST00000468545 PDCD7Q8N8D1 485 aaKnown RBP7.58□□□□□ -1.2
TMEM39A-204ENST00000468545 KDM2AQ9Y2K7 1162 aa7.57□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms