RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 ARAP1Q96P48 1450 aa11.93□□□□□ -0.5
HMGB1-207ENST00000468384 SCRIBQ14160 1630 aa11.92□□□□□ -0.5
HMGB1-207ENST00000468384 ERCC6L2Q5T890 1561 aa11.92□□□□□ -0.5
HMGB1-207ENST00000468384 CD44P16070 742 aaKnown RBP11.91□□□□□ -0.5
HMGB1-207ENST00000468384 FAM163AQ96GL9 167 aaPredicted RBP11.91□□□□□ -0.5
HMGB1-207ENST00000468384 DISP3Q9P2K9 1392 aa11.91□□□□□ -0.5
HMGB1-207ENST00000468384 SPDYE1Q8NFV5 336 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-207ENST00000468384 ATF5Q9Y2D1 282 aaPredicted RBP11.81□□□□□ -0.52
HMGB1-207ENST00000468384 CDAN1Q8IWY9 1227 aa11.8□□□□□ -0.52
HMGB1-207ENST00000468384 KIF21AQ7Z4S6 1674 aa11.79□□□□□ -0.52
HMGB1-207ENST00000468384 NCAPD3P42695 1498 aa11.79□□□□□ -0.52
HMGB1-207ENST00000468384 POTEJP0CG39 1038 aa11.78□□□□□ -0.52
HMGB1-207ENST00000468384 HECW2Q9P2P5 1572 aa11.75□□□□□ -0.53
HMGB1-207ENST00000468384 PDS5BQ9NTI5 1447 aa11.75□□□□□ -0.53
HMGB1-207ENST00000468384 CLCN6P51797 869 aa11.74□□□□□ -0.53
HMGB1-207ENST00000468384 WDR62O43379 1518 aa11.72□□□□□ -0.53
HMGB1-207ENST00000468384 MRC2Q9UBG0 1479 aa11.72□□□□□ -0.53
HMGB1-207ENST00000468384 LAMC3Q9Y6N6 1575 aa11.71□□□□□ -0.54
HMGB1-207ENST00000468384 GALR2O43603 387 aaPredicted RBP11.7□□□□□ -0.54
HMGB1-207ENST00000468384 MMRN1Q13201 1228 aa11.69□□□□□ -0.54
HMGB1-207ENST00000468384 MYCNP04198 464 aaPredicted RBP11.68□□□□□ -0.54
HMGB1-207ENST00000468384 PELP1Q8IZL8 1130 aaKnown RBP11.67□□□□□ -0.54
HMGB1-207ENST00000468384 SYNJ2O15056 1496 aa11.63□□□□□ -0.55
HMGB1-207ENST00000468384 SPDYE2BA6NHP3 402 aa11.62□□□□□ -0.55
HMGB1-207ENST00000468384 SPDYE6P0CI01 402 aa11.62□□□□□ -0.55
HMGB1-207ENST00000468384 SPDYE2Q495Y8 402 aa11.62□□□□□ -0.55
HMGB1-207ENST00000468384 RSF1Q96T23 1441 aaPredicted RBP11.6□□□□□ -0.55
HMGB1-207ENST00000468384 ZNF579Q8NAF0 562 aaKnown RBP11.59□□□□□ -0.55
HMGB1-207ENST00000468384 FARP1Q9Y4F1 1045 aaPredicted RBP11.57□□□□□ -0.56
HMGB1-207ENST00000468384 SPNS2Q8IVW8 549 aa11.55□□□□□ -0.56
HMGB1-207ENST00000468384 SPATA31D1Q6ZQQ2 1576 aa11.54□□□□□ -0.56
HMGB1-207ENST00000468384 ATAD2BQ9ULI0 1458 aa11.52□□□□□ -0.56
HMGB1-207ENST00000468384 PRR29P0C7W0 189 aa11.51□□□□□ -0.57
HMGB1-207ENST00000468384 ZRANB1Q9UGI0 708 aa11.51□□□□□ -0.57
HMGB1-207ENST00000468384 HMGXB3Q12766 1538 aa11.5□□□□□ -0.57
HMGB1-207ENST00000468384 METRNQ9UJH8 293 aa11.49□□□□□ -0.57
HMGB1-207ENST00000468384 MAMSTRQ6ZN01 415 aa11.46□□□□□ -0.57
HMGB1-207ENST00000468384 ADGRL1O94910 1474 aa11.44□□□□□ -0.58
HMGB1-207ENST00000468384 SCUBE2Q9NQ36 999 aa11.37□□□□□ -0.59
HMGB1-207ENST00000468384 SSUH2Q9Y2M2 353 aa11.36□□□□□ -0.59
HMGB1-207ENST00000468384 CADPSQ9ULU8 1353 aa11.36□□□□□ -0.59
HMGB1-207ENST00000468384 CEP164Q9UPV0 1460 aa11.36□□□□□ -0.59
HMGB1-207ENST00000468384 ZNF608Q9ULD9 1512 aaPredicted RBP11.35□□□□□ -0.59
HMGB1-207ENST00000468384 ZNF692Q9BU19 519 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-207ENST00000468384 CHD1O14646 1710 aa11.32□□□□□ -0.6
HMGB1-207ENST00000468384 FBLN2P98095 1184 aa11.31□□□□□ -0.6
HMGB1-207ENST00000468384 PHF12Q96QT6 1004 aa11.31□□□□□ -0.6
HMGB1-207ENST00000468384 BAZ1BQ9UIG0 1483 aaKnown RBP11.31□□□□□ -0.6
HMGB1-207ENST00000468384 KIF13AQ9H1H9 1805 aa11.3□□□□□ -0.6
HMGB1-207ENST00000468384 DCAF1Q9Y4B6 1507 aa11.3□□□□□ -0.6
HMGB1-207ENST00000468384 KDM6BO15054 1643 aa11.28□□□□□ -0.6
HMGB1-207ENST00000468384 C7P10643 843 aa11.28□□□□□ -0.6
HMGB1-207ENST00000468384 CERKQ8TCT0 537 aa11.28□□□□□ -0.6
HMGB1-207ENST00000468384 SMARCA4P51532 1647 aa11.27□□□□□ -0.6
HMGB1-207ENST00000468384 SLC39A7Q92504 469 aa11.27□□□□□ -0.61
HMGB1-207ENST00000468384 GAPVD1Q14C86 1478 aa11.26□□□□□ -0.61
HMGB1-207ENST00000468384 ST18O60284 1047 aa11.24□□□□□ -0.61
HMGB1-207ENST00000468384 ASTLQ6HA08 431 aaPredicted RBP11.23□□□□□ -0.61
HMGB1-207ENST00000468384 URB2Q14146 1524 aaKnown RBP11.23□□□□□ -0.61
HMGB1-207ENST00000468384 ATMINO43313 823 aaPredicted RBP11.22□□□□□ -0.61
HMGB1-207ENST00000468384 CLASP1Q7Z460 1538 aa11.22□□□□□ -0.61
HMGB1-207ENST00000468384 FANCD2Q9BXW9 1451 aa11.22□□□□□ -0.61
HMGB1-207ENST00000468384 FAM69CQ0P6D2 419 aa11.2□□□□□ -0.62
HMGB1-207ENST00000468384 IFT140Q96RY7 1462 aa11.19□□□□□ -0.62
HMGB1-207ENST00000468384 POTEFA5A3E0 1075 aa11.17□□□□□ -0.62
HMGB1-207ENST00000468384 KCNA4P22459 653 aa11.16□□□□□ -0.62
HMGB1-207ENST00000468384 EIF4G3O43432 1585 aaKnown RBP11.15□□□□□ -0.62
HMGB1-207ENST00000468384 ABCC10Q5T3U5 1492 aa11.12□□□□□ -0.63
HMGB1-207ENST00000468384 MKRN4PQ13434 485 aaPredicted RBP11.11□□□□□ -0.63
HMGB1-207ENST00000468384 ZCCHC6Q5VYS8 1495 aaKnown RBP11.11□□□□□ -0.63
HMGB1-207ENST00000468384 AQRO60306 1485 aaKnown RBP eCLIP11.06□□□□□ -0.641e-7■■■□□ 15
HMGB1-207ENST00000468384 MS4A3Q96HJ5 214 aa11.06□□□□□ -0.64
HMGB1-207ENST00000468384 SYNJ1O43426 1573 aa11.05□□□□□ -0.64
HMGB1-207ENST00000468384 ATN1P54259 1190 aaPredicted RBP11.03□□□□□ -0.64
HMGB1-207ENST00000468384 TOP2BQ02880 1626 aa11□□□□□ -0.65
HMGB1-207ENST00000468384 PEG3Q9GZU2 1588 aa10.99□□□□□ -0.65
HMGB1-207ENST00000468384 DIP2BQ9P265 1576 aa10.99□□□□□ -0.65
HMGB1-207ENST00000468384 CHMP7Q8WUX9 453 aaPredicted RBP10.98□□□□□ -0.65
HMGB1-207ENST00000468384 MARVELD3Q96A59 401 aa10.96□□□□□ -0.65
HMGB1-207ENST00000468384 TSPOAP1O95153 1857 aa10.94□□□□□ -0.66
HMGB1-207ENST00000468384 CREBZFQ9NS37 354 aa10.94□□□□□ -0.66
HMGB1-207ENST00000468384 PCF11O94913 1555 aaKnown RBP10.93□□□□□ -0.66
HMGB1-207ENST00000468384 PAK3O75914 559 aaPredicted RBP10.91□□□□□ -0.66
HMGB1-207ENST00000468384 SLAIN1Q8ND83 568 aa10.91□□□□□ -0.66
HMGB1-207ENST00000468384 COLQQ9Y215 455 aaPredicted RBP10.91□□□□□ -0.66
HMGB1-207ENST00000468384 CFTRP13569 1480 aa10.89□□□□□ -0.67
HMGB1-207ENST00000468384 SNAPC4Q5SXM2 1469 aa10.89□□□□□ -0.67
HMGB1-207ENST00000468384 KRTAP3-3Q9BYR6 98 aa10.89□□□□□ -0.67
HMGB1-207ENST00000468384 KRTAP3-2Q9BYR7 98 aa10.89□□□□□ -0.67
HMGB1-207ENST00000468384 SRCAPQ6ZRS2 3230 aa10.88□□□□□ -0.67
HMGB1-207ENST00000468384 IFFO2Q5TF58 517 aa10.88□□□□□ -0.67
HMGB1-207ENST00000468384 MAPKBP1O60336 1514 aa10.88□□□□□ -0.67
HMGB1-207ENST00000468384 NPM1P06748 294 aaKnown RBP eCLIP10.85□□□□□ -0.67
HMGB1-207ENST00000468384 HSPA2P54652 639 aa10.85□□□□□ -0.67
HMGB1-207ENST00000468384 COL17A1Q9UMD9 1497 aaPredicted RBP10.85□□□□□ -0.67
HMGB1-207ENST00000468384 PTPRMP28827 1452 aa10.83□□□□□ -0.68
HMGB1-207ENST00000468384 MED1Q15648 1581 aaPredicted RBP10.82□□□□□ -0.68
HMGB1-207ENST00000468384 TARBP1Q13395 1621 aaKnown RBP10.82□□□□□ -0.68
HMGB1-207ENST00000468384 TOPBP1Q92547 1522 aa10.82□□□□□ -0.68
HMGB1-207ENST00000468384 TMEM121BQ9BXQ6 578 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms