RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 NUP160Q12769 1436 aa11.11□□□□□ -0.63
SCAF4-204ENST00000467731 TNIKQ9UKE5 1360 aa11.1□□□□□ -0.63
SCAF4-204ENST00000467731 IQGAP2Q13576 1575 aa11.07□□□□□ -0.64
SCAF4-204ENST00000467731 KIAA0586Q9BVV6 1533 aa11.07□□□□□ -0.64
SCAF4-204ENST00000467731 RANGAP1P46060 587 aaPredicted RBP11.05□□□□□ -0.64
SCAF4-204ENST00000467731 OSCARQ8IYS5 282 aa11.04□□□□□ -0.64
SCAF4-204ENST00000467731 CLASP1Q7Z460 1538 aa11.04□□□□□ -0.64
SCAF4-204ENST00000467731 CEP162Q5TB80 1403 aa11.03□□□□□ -0.64
SCAF4-204ENST00000467731 CLIP1P30622 1438 aa11.01□□□□□ -0.65
SCAF4-204ENST00000467731 UGGT2Q9NYU1 1516 aa11□□□□□ -0.65
SCAF4-204ENST00000467731 JPH4Q96JJ6 628 aa11□□□□□ -0.65
SCAF4-204ENST00000467731 SHROOM2Q13796 1616 aa11□□□□□ -0.65
SCAF4-204ENST00000467731 PELP1Q8IZL8 1130 aaKnown RBP10.98□□□□□ -0.65
SCAF4-204ENST00000467731 ARHGAP35Q9NRY4 1499 aa10.98□□□□□ -0.65
SCAF4-204ENST00000467731 SAMD9Q5K651 1589 aa10.98□□□□□ -0.65
SCAF4-204ENST00000467731 EFCAB5A4FU69 1503 aa10.97□□□□□ -0.65
SCAF4-204ENST00000467731 DISP1Q96F81 1524 aa10.97□□□□□ -0.65
SCAF4-204ENST00000467731 KIAA0556O60303 1618 aa10.96□□□□□ -0.65
SCAF4-204ENST00000467731 PRG4Q92954 1404 aaPredicted RBP10.96□□□□□ -0.66
SCAF4-204ENST00000467731 P3H3Q8IVL6 736 aa10.96□□□□□ -0.66
SCAF4-204ENST00000467731 ERCC6L2Q5T890 1561 aa10.94□□□□□ -0.66
SCAF4-204ENST00000467731 FHOD3Q2V2M9 1422 aa10.94□□□□□ -0.66
SCAF4-204ENST00000467731 ARAP1Q96P48 1450 aa10.94□□□□□ -0.66
SCAF4-204ENST00000467731 CARMIL2Q6F5E8 1435 aa10.94□□□□□ -0.66
SCAF4-204ENST00000467731 TTBK1Q5TCY1 1321 aaPredicted RBP10.9□□□□□ -0.67
SCAF4-204ENST00000467731 ARHGEF11O15085 1522 aa10.88□□□□□ -0.67
SCAF4-204ENST00000467731 MYT1Q01538 1121 aa10.88□□□□□ -0.67
SCAF4-204ENST00000467731 VPS8Q8N3P4 1428 aa10.87□□□□□ -0.67
SCAF4-204ENST00000467731 FMN1Q68DA7 1419 aa10.87□□□□□ -0.67
SCAF4-204ENST00000467731 PTPRGP23470 1445 aa10.86□□□□□ -0.67
SCAF4-204ENST00000467731 RIMBP3CA6NJZ7 1639 aa10.85□□□□□ -0.67
SCAF4-204ENST00000467731 RIMBP3BA6NNM3 1639 aa10.85□□□□□ -0.67
SCAF4-204ENST00000467731 RIMBP3Q9UFD9 1639 aa10.85□□□□□ -0.67
SCAF4-204ENST00000467731 PCF11O94913 1555 aaKnown RBP10.85□□□□□ -0.67
SCAF4-204ENST00000467731 PLB1Q6P1J6 1458 aa10.83□□□□□ -0.68
SCAF4-204ENST00000467731 RAPGEF6Q8TEU7 1601 aa10.82□□□□□ -0.68
SCAF4-204ENST00000467731 CASKIN1Q8WXD9 1431 aa10.81□□□□□ -0.68
SCAF4-204ENST00000467731 ABCA8O94911 1581 aa10.81□□□□□ -0.68
SCAF4-204ENST00000467731 FYCO1Q9BQS8 1478 aa10.81□□□□□ -0.68
SCAF4-204ENST00000467731 LRRIQ1Q96JM4 1722 aa10.81□□□□□ -0.68
SCAF4-204ENST00000467731 ATP1B4Q9UN42 357 aaPredicted RBP10.8□□□□□ -0.68
SCAF4-204ENST00000467731 HECW1Q76N89 1606 aa10.8□□□□□ -0.68
SCAF4-204ENST00000467731 UACAQ9BZF9 1416 aa10.79□□□□□ -0.68
SCAF4-204ENST00000467731 NUP153P49790 1475 aaKnown RBP10.78□□□□□ -0.68
SCAF4-204ENST00000467731 ABCC2Q92887 1545 aa10.78□□□□□ -0.68
SCAF4-204ENST00000467731 ADCY10Q96PN6 1610 aa10.77□□□□□ -0.69
SCAF4-204ENST00000467731 ARID3CA6NKF2 412 aa10.77□□□□□ -0.69
SCAF4-204ENST00000467731 CYB5RLQ6IPT4 315 aa10.77□□□□□ -0.69
SCAF4-204ENST00000467731 DNAJC5Q9H3Z4 198 aa10.76□□□□□ -0.69
SCAF4-204ENST00000467731 EPRSP07814 1512 aaKnown RBP10.76□□□□□ -0.69
SCAF4-204ENST00000467731 UHRF1BP1LA0JNW5 1464 aa10.75□□□□□ -0.69
SCAF4-204ENST00000467731 CDK13Q14004 1512 aaKnown RBP10.75□□□□□ -0.69
SCAF4-204ENST00000467731 CFAP43Q8NDM7 1665 aa10.75□□□□□ -0.69
SCAF4-204ENST00000467731 TIAM1Q13009 1591 aa10.74□□□□□ -0.69
SCAF4-204ENST00000467731 APLP2Q06481 763 aa10.74□□□□□ -0.69
SCAF4-204ENST00000467731 CCDC18Q5T9S5 1454 aa10.74□□□□□ -0.69
SCAF4-204ENST00000467731 ATP10BO94823 1461 aa10.72□□□□□ -0.69
SCAF4-204ENST00000467731 ZCCHC11Q5TAX3 1644 aaKnown RBP10.72□□□□□ -0.69
SCAF4-204ENST00000467731 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.72□□□□□ -0.69
SCAF4-204ENST00000467731 HNRNPUL2Q1KMD3 747 aaKnown RBP10.72□□□□□ -0.69
SCAF4-204ENST00000467731 KDM5BQ9UGL1 1544 aa10.72□□□□□ -0.69
SCAF4-204ENST00000467731 MAP3K1Q13233 1512 aa10.71□□□□□ -0.69
SCAF4-204ENST00000467731 PPARGC1BQ86YN6 1023 aaKnown RBP10.7□□□□□ -0.7
SCAF4-204ENST00000467731 KANK4Q5T7N3 995 aaPredicted RBP10.7□□□□□ -0.7
SCAF4-204ENST00000467731 MAGI3Q5TCQ9 1506 aa10.69□□□□□ -0.7
SCAF4-204ENST00000467731 LRRC9Q6ZRR7 1453 aa10.68□□□□□ -0.7
SCAF4-204ENST00000467731 MTUS2Q5JR59 1369 aa10.67□□□□□ -0.7
SCAF4-204ENST00000467731 NPM1P06748 294 aaKnown RBP eCLIP10.66□□□□□ -0.7
SCAF4-204ENST00000467731 CDK11AQ9UQ88 783 aaPredicted RBP10.66□□□□□ -0.7
SCAF4-204ENST00000467731 EHBP1L1Q8N3D4 1523 aa10.66□□□□□ -0.7
SCAF4-204ENST00000467731 PLEKHD1A6NEE1 506 aa10.65□□□□□ -0.7
SCAF4-204ENST00000467731 TROQ12816 1431 aaPredicted RBP10.64□□□□□ -0.71
SCAF4-204ENST00000467731 ASXL2Q76L83 1435 aa10.63□□□□□ -0.71
SCAF4-204ENST00000467731 SUPT6HQ7KZ85 1726 aaKnown RBP10.63□□□□□ -0.71
SCAF4-204ENST00000467731 WDR7Q9Y4E6 1490 aa10.63□□□□□ -0.71
SCAF4-204ENST00000467731 KIF14Q15058 1648 aa10.63□□□□□ -0.71
SCAF4-204ENST00000467731 MAPKBP1O60336 1514 aa10.62□□□□□ -0.71
SCAF4-204ENST00000467731 KCNH8Q96L42 1107 aa10.6□□□□□ -0.71
SCAF4-204ENST00000467731 NCOA2Q15596 1464 aa10.6□□□□□ -0.71
SCAF4-204ENST00000467731 TTC37Q6PGP7 1564 aa10.58□□□□□ -0.72
SCAF4-204ENST00000467731 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.58□□□□□ -0.72
SCAF4-204ENST00000467731 PHLDB1Q86UU1 1377 aa10.57□□□□□ -0.72
SCAF4-204ENST00000467731 ABCC10Q5T3U5 1492 aa10.57□□□□□ -0.72
SCAF4-204ENST00000467731 CDC42BPAQ5VT25 1732 aa10.56□□□□□ -0.72
SCAF4-204ENST00000467731 ABCA9Q8IUA7 1624 aa10.55□□□□□ -0.72
SCAF4-204ENST00000467731 DIP2BQ9P265 1576 aa10.55□□□□□ -0.72
SCAF4-204ENST00000467731 MYO5CQ9NQX4 1742 aa10.55□□□□□ -0.72
SCAF4-204ENST00000467731 CCNB3Q8WWL7 1395 aa10.54□□□□□ -0.72
SCAF4-204ENST00000467731 ITSN2Q9NZM3 1697 aa10.54□□□□□ -0.72
SCAF4-204ENST00000467731 MYOM3Q5VTT5 1437 aa10.54□□□□□ -0.72
SCAF4-204ENST00000467731 GPATCH8Q9UKJ3 1502 aaKnown RBP10.53□□□□□ -0.72
SCAF4-204ENST00000467731 KIF13AQ9H1H9 1805 aa10.53□□□□□ -0.72
SCAF4-204ENST00000467731 CDC42BPBQ9Y5S2 1711 aa10.53□□□□□ -0.72
SCAF4-204ENST00000467731 PREX2Q70Z35 1606 aa10.53□□□□□ -0.72
SCAF4-204ENST00000467731 GLI2P10070 1586 aa10.52□□□□□ -0.73
SCAF4-204ENST00000467731 FGD6Q6ZV73 1430 aa10.51□□□□□ -0.73
SCAF4-204ENST00000467731 FAM69CQ0P6D2 419 aa10.51□□□□□ -0.73
SCAF4-204ENST00000467731 MAP3K4Q9Y6R4 1608 aa10.5□□□□□ -0.73
SCAF4-204ENST00000467731 RRBP1Q9P2E9 1410 aaKnown RBP10.5□□□□□ -0.73
SCAF4-204ENST00000467731 CFDP1Q9UEE9 299 aaPredicted RBP10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms