RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 RAPGEF2Q9Y4G8 1499 aa19.51■□□□□ 0.71
CUX1-207ENST00000465461 CYB5RLQ6IPT4 315 aa19.5■□□□□ 0.71
CUX1-207ENST00000465461 ERCC6L2Q5T890 1561 aa19.49■□□□□ 0.71
CUX1-207ENST00000465461 JPH4Q96JJ6 628 aa19.48■□□□□ 0.71
CUX1-207ENST00000465461 ARAP1Q96P48 1450 aa19.47■□□□□ 0.71
CUX1-207ENST00000465461 PRXQ9BXM0 1461 aa19.46■□□□□ 0.71
CUX1-207ENST00000465461 SHROOM2Q13796 1616 aa19.45■□□□□ 0.7
CUX1-207ENST00000465461 KIAA0586Q9BVV6 1533 aa19.45■□□□□ 0.7
CUX1-207ENST00000465461 EEA1Q15075 1411 aa19.42■□□□□ 0.7
CUX1-207ENST00000465461 PRG4Q92954 1404 aaPredicted RBP19.42■□□□□ 0.7
CUX1-207ENST00000465461 EHMT2Q96KQ7 1210 aa19.4■□□□□ 0.7
CUX1-207ENST00000465461 IQGAP2Q13576 1575 aa19.36■□□□□ 0.69
CUX1-207ENST00000465461 TTBK1Q5TCY1 1321 aaPredicted RBP19.32■□□□□ 0.68
CUX1-207ENST00000465461 CTTNBP2Q8WZ74 1663 aa19.31■□□□□ 0.68
CUX1-207ENST00000465461 KIF21BO75037 1637 aa19.26■□□□□ 0.67
CUX1-207ENST00000465461 RANGAP1P46060 587 aaPredicted RBP19.26■□□□□ 0.67
CUX1-207ENST00000465461 DISP1Q96F81 1524 aa19.25■□□□□ 0.67
CUX1-207ENST00000465461 UGGT2Q9NYU1 1516 aa19.24■□□□□ 0.67
CUX1-207ENST00000465461 CARMIL2Q6F5E8 1435 aa19.23■□□□□ 0.67
CUX1-207ENST00000465461 UBTFP17480 764 aaKnown RBP19.2■□□□□ 0.66
CUX1-207ENST00000465461 P3H3Q8IVL6 736 aa19.2■□□□□ 0.66
CUX1-207ENST00000465461 TNIKQ9UKE5 1360 aa19.19■□□□□ 0.66
CUX1-207ENST00000465461 PTPRGP23470 1445 aa19.19■□□□□ 0.66
CUX1-207ENST00000465461 KIAA0556O60303 1618 aa19.18■□□□□ 0.66
CUX1-207ENST00000465461 GOLGA3Q08378 1498 aa19.17■□□□□ 0.66
CUX1-207ENST00000465461 ADCY10Q96PN6 1610 aa19.11■□□□□ 0.65
CUX1-207ENST00000465461 TRHP20396 242 aaPredicted RBP19.08■□□□□ 0.64
CUX1-207ENST00000465461 SAMD9Q5K651 1589 aa19.06■□□□□ 0.64
CUX1-207ENST00000465461 UACAQ9BZF9 1416 aa19.06■□□□□ 0.64
CUX1-207ENST00000465461 NPM1P06748 294 aaKnown RBP eCLIP19.04■□□□□ 0.64
CUX1-207ENST00000465461 PLB1Q6P1J6 1458 aa19.03■□□□□ 0.64
CUX1-207ENST00000465461 FHOD3Q2V2M9 1422 aa19.03■□□□□ 0.64
CUX1-207ENST00000465461 LOC105371045A0A1W2PR82 267 aa19.01■□□□□ 0.63
CUX1-207ENST00000465461 ABCC2Q92887 1545 aa19■□□□□ 0.63
CUX1-207ENST00000465461 UHRF1BP1LA0JNW5 1464 aa18.99■□□□□ 0.63
CUX1-207ENST00000465461 ARID3CA6NKF2 412 aa18.99■□□□□ 0.63
CUX1-207ENST00000465461 ABCA8O94911 1581 aa18.97■□□□□ 0.63
CUX1-207ENST00000465461 ARHGAP35Q9NRY4 1499 aa18.96■□□□□ 0.63
CUX1-207ENST00000465461 EFCAB5A4FU69 1503 aa18.95■□□□□ 0.62
CUX1-207ENST00000465461 ZCCHC11Q5TAX3 1644 aaKnown RBP18.92■□□□□ 0.62
CUX1-207ENST00000465461 MAPKBP1O60336 1514 aa18.91■□□□□ 0.62
CUX1-207ENST00000465461 KDM5BQ9UGL1 1544 aa18.91■□□□□ 0.62
CUX1-207ENST00000465461 ASXL2Q76L83 1435 aa18.89■□□□□ 0.61
CUX1-207ENST00000465461 RAPGEF6Q8TEU7 1601 aa18.89■□□□□ 0.61
CUX1-207ENST00000465461 FAM69CQ0P6D2 419 aa18.88■□□□□ 0.61
CUX1-207ENST00000465461 CLIP1P30622 1438 aa18.86■□□□□ 0.61
CUX1-207ENST00000465461 KIF13AQ9H1H9 1805 aa18.86■□□□□ 0.61
CUX1-207ENST00000465461 ATP10BO94823 1461 aa18.85■□□□□ 0.61
CUX1-207ENST00000465461 ABCC10Q5T3U5 1492 aa18.85■□□□□ 0.61
CUX1-207ENST00000465461 ATP1B4Q9UN42 357 aaPredicted RBP18.85■□□□□ 0.61
CUX1-207ENST00000465461 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.84■□□□□ 0.61
CUX1-207ENST00000465461 HNRNPUL2Q1KMD3 747 aaKnown RBP18.84■□□□□ 0.61
CUX1-207ENST00000465461 NUP153P49790 1475 aaKnown RBP18.84■□□□□ 0.61
CUX1-207ENST00000465461 DIP2BQ9P265 1576 aa18.83■□□□□ 0.6
CUX1-207ENST00000465461 KCNH8Q96L42 1107 aa18.81■□□□□ 0.6
CUX1-207ENST00000465461 CEP162Q5TB80 1403 aa18.8■□□□□ 0.6
CUX1-207ENST00000465461 FMN1Q68DA7 1419 aa18.8■□□□□ 0.6
CUX1-207ENST00000465461 WDR7Q9Y4E6 1490 aa18.77■□□□□ 0.6
CUX1-207ENST00000465461 EPRSP07814 1512 aaKnown RBP18.76■□□□□ 0.59
CUX1-207ENST00000465461 CDK13Q14004 1512 aaKnown RBP18.75■□□□□ 0.59
CUX1-207ENST00000465461 TSPOAP1O95153 1857 aa18.74■□□□□ 0.59
CUX1-207ENST00000465461 PCF11O94913 1555 aaKnown RBP18.72■□□□□ 0.59
CUX1-207ENST00000465461 HECW1Q76N89 1606 aa18.71■□□□□ 0.59
CUX1-207ENST00000465461 GLI2P10070 1586 aa18.71■□□□□ 0.59
CUX1-207ENST00000465461 LRRIQ1Q96JM4 1722 aa18.7■□□□□ 0.58
CUX1-207ENST00000465461 PLEKHD1A6NEE1 506 aa18.69■□□□□ 0.58
CUX1-207ENST00000465461 CASKIN1Q8WXD9 1431 aa18.68■□□□□ 0.58
CUX1-207ENST00000465461 MAP3K4Q9Y6R4 1608 aa18.65■□□□□ 0.58
CUX1-207ENST00000465461 PPRC1Q5VV67 1664 aaKnown RBP18.64■□□□□ 0.57
CUX1-207ENST00000465461 CD109Q6YHK3 1445 aa18.62■□□□□ 0.57
CUX1-207ENST00000465461 FYCO1Q9BQS8 1478 aa18.62■□□□□ 0.57
CUX1-207ENST00000465461 CFAP43Q8NDM7 1665 aa18.58■□□□□ 0.57
CUX1-207ENST00000465461 ABCA9Q8IUA7 1624 aa18.57■□□□□ 0.56
CUX1-207ENST00000465461 CDK11AQ9UQ88 783 aaPredicted RBP18.57■□□□□ 0.56
CUX1-207ENST00000465461 CCDC18Q5T9S5 1454 aa18.57■□□□□ 0.56
CUX1-207ENST00000465461 MAGI3Q5TCQ9 1506 aa18.56■□□□□ 0.56
CUX1-207ENST00000465461 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.55■□□□□ 0.56
CUX1-207ENST00000465461 TROQ12816 1431 aaPredicted RBP18.54■□□□□ 0.56
CUX1-207ENST00000465461 VPS8Q8N3P4 1428 aa18.54■□□□□ 0.56
CUX1-207ENST00000465461 KIF14Q15058 1648 aa18.53■□□□□ 0.56
CUX1-207ENST00000465461 TTC37Q6PGP7 1564 aa18.53■□□□□ 0.56
CUX1-207ENST00000465461 TEX14Q8IWB6 1497 aa18.52■□□□□ 0.56
CUX1-207ENST00000465461 KDM6BO15054 1643 aa18.52■□□□□ 0.55
CUX1-207ENST00000465461 COL17A1Q9UMD9 1497 aaPredicted RBP18.51■□□□□ 0.55
CUX1-207ENST00000465461 MTUS2Q5JR59 1369 aa18.44■□□□□ 0.54
CUX1-207ENST00000465461 PLCH2O75038 1416 aa18.42■□□□□ 0.54
CUX1-207ENST00000465461 TIAM1Q13009 1591 aa18.42■□□□□ 0.54
CUX1-207ENST00000465461 FANCAO15360 1455 aa18.41■□□□□ 0.54
CUX1-207ENST00000465461 MYO5CQ9NQX4 1742 aa18.4■□□□□ 0.54
CUX1-207ENST00000465461 RAPGEF3O95398 923 aa18.4■□□□□ 0.54
CUX1-207ENST00000465461 KANK4Q5T7N3 995 aaPredicted RBP18.4■□□□□ 0.54
CUX1-207ENST00000465461 AKNAQ7Z591 1439 aa18.4■□□□□ 0.54
CUX1-207ENST00000465461 NEO1Q92859 1461 aa18.39■□□□□ 0.54
CUX1-207ENST00000465461 EFCAB2Q5VUJ9 269 aa18.37■□□□□ 0.53
CUX1-207ENST00000465461 ARHGAP5Q13017 1502 aa18.37■□□□□ 0.53
CUX1-207ENST00000465461 EHBP1L1Q8N3D4 1523 aa18.37■□□□□ 0.53
CUX1-207ENST00000465461 ARAP3Q8WWN8 1544 aa18.37■□□□□ 0.53
CUX1-207ENST00000465461 CDC42BPBQ9Y5S2 1711 aa18.36■□□□□ 0.53
CUX1-207ENST00000465461 PHLDB1Q86UU1 1377 aa18.35■□□□□ 0.53
CUX1-207ENST00000465461 APLP2Q06481 763 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms