RNA–Protein interactions for RNA: ENST00000460925.1

SF3A3-202, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 793 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-202ENST00000460925 KDM2AQ9Y2K7 1162 aa9.81□□□□□ -0.84
SF3A3-202ENST00000460925 MNX1P50219 401 aaPredicted RBP9.79□□□□□ -0.84
SF3A3-202ENST00000460925 CREBZFQ9NS37 354 aa9.79□□□□□ -0.84
SF3A3-202ENST00000460925 RNF25Q96BH1 459 aaPredicted RBP9.78□□□□□ -0.84
SF3A3-202ENST00000460925 PRR29P0C7W0 189 aa9.77□□□□□ -0.85
SF3A3-202ENST00000460925 REM2Q8IYK8 340 aaPredicted RBP9.77□□□□□ -0.85
SF3A3-202ENST00000460925 TAOK2Q9UL54 1235 aa9.75□□□□□ -0.85
SF3A3-202ENST00000460925 DCAF8Q5TAQ9 597 aa9.74□□□□□ -0.85
SF3A3-202ENST00000460925 CHRM1P11229 460 aaPredicted RBP9.73□□□□□ -0.85
SF3A3-202ENST00000460925 FAM212AQ96EL1 285 aa9.73□□□□□ -0.85
SF3A3-202ENST00000460925 TSHZ2Q9NRE2 1034 aa9.73□□□□□ -0.85
SF3A3-202ENST00000460925 CLEC11AQ9Y240 323 aa9.73□□□□□ -0.85
SF3A3-202ENST00000460925 RIOK3O14730 519 aaKnown RBP9.72□□□□□ -0.85
SF3A3-202ENST00000460925 ABCC9O60706 1549 aa9.69□□□□□ -0.86
SF3A3-202ENST00000460925 SGIP1Q9BQI5 828 aa9.68□□□□□ -0.86
SF3A3-202ENST00000460925 VGFO15240 615 aaPredicted RBP9.67□□□□□ -0.86
SF3A3-202ENST00000460925 RASEFQ8IZ41 740 aa9.66□□□□□ -0.86
SF3A3-202ENST00000460925 PITPNM1O00562 1244 aa9.64□□□□□ -0.87
SF3A3-202ENST00000460925 NKX1-1Q15270 411 aaPredicted RBP9.63□□□□□ -0.87
SF3A3-202ENST00000460925 GTPBP6O43824 516 aaPredicted RBP9.61□□□□□ -0.87
SF3A3-202ENST00000460925 STK25O00506 426 aa9.59□□□□□ -0.87
SF3A3-202ENST00000460925 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.55□□□□□ -0.88
SF3A3-202ENST00000460925 PRKCSHP14314 528 aaPredicted RBP9.55□□□□□ -0.88
SF3A3-202ENST00000460925 ZFP91Q96JP5 570 aaPredicted RBP9.55□□□□□ -0.88
SF3A3-202ENST00000460925 RYDENQ9NUL5 291 aaKnown RBP9.55□□□□□ -0.88
SF3A3-202ENST00000460925 PYGBP11216 843 aa9.54□□□□□ -0.88
SF3A3-202ENST00000460925 BCL11BQ9C0K0 894 aaPredicted RBP9.53□□□□□ -0.88
SF3A3-202ENST00000460925 ZCCHC6Q5VYS8 1495 aaKnown RBP9.52□□□□□ -0.89
SF3A3-202ENST00000460925 STK24Q9Y6E0 443 aa9.51□□□□□ -0.89
SF3A3-202ENST00000460925 ZNF467Q7Z7K2 595 aaPredicted RBP9.49□□□□□ -0.89
SF3A3-202ENST00000460925 FARP1Q9Y4F1 1045 aaPredicted RBP9.49□□□□□ -0.89
SF3A3-202ENST00000460925 TPRNQ4KMQ1 711 aa9.48□□□□□ -0.89
SF3A3-202ENST00000460925 NBR1Q14596 966 aa9.46□□□□□ -0.9
SF3A3-202ENST00000460925 CHADLQ6NUI6 762 aa9.45□□□□□ -0.9
SF3A3-202ENST00000460925 TSPYL2Q9H2G4 693 aaPredicted RBP9.43□□□□□ -0.9
SF3A3-202ENST00000460925 PDAP1Q13442 181 aaKnown RBP9.42□□□□□ -0.9
SF3A3-202ENST00000460925 FXR2P51116 673 aaKnown RBP eCLIP9.41□□□□□ -0.97e-9■■□□□ 12.4
SF3A3-202ENST00000460925 CCDC61Q9Y6R9 512 aa9.41□□□□□ -0.9
SF3A3-202ENST00000460925 ZNF579Q8NAF0 562 aaKnown RBP9.4□□□□□ -0.9
SF3A3-202ENST00000460925 PRKAR2AP13861 404 aaKnown RBP9.39□□□□□ -0.91
SF3A3-202ENST00000460925 PSEN1P49768 467 aa9.35□□□□□ -0.91
SF3A3-202ENST00000460925 PCDHB8Q9UN66 801 aa9.35□□□□□ -0.91
SF3A3-202ENST00000460925 PCDHB13Q9Y5F0 798 aa9.35□□□□□ -0.91
SF3A3-202ENST00000460925 DCAF1Q9Y4B6 1507 aa9.34□□□□□ -0.91
SF3A3-202ENST00000460925 NACADO15069 1562 aa9.33□□□□□ -0.92
SF3A3-202ENST00000460925 P3H3Q8IVL6 736 aa9.33□□□□□ -0.92
SF3A3-202ENST00000460925 RB1CC1Q8TDY2 1594 aa9.33□□□□□ -0.92
SF3A3-202ENST00000460925 PAK3O75914 559 aaPredicted RBP9.31□□□□□ -0.92
SF3A3-202ENST00000460925 MFRPQ9BY79 579 aa9.31□□□□□ -0.92
SF3A3-202ENST00000460925 KIF12Q96FN5 646 aa9.29□□□□□ -0.92
SF3A3-202ENST00000460925 MYO15BQ96JP2 1530 aa9.28□□□□□ -0.92
SF3A3-202ENST00000460925 CADPS2Q86UW7 1296 aa9.28□□□□□ -0.92
SF3A3-202ENST00000460925 IFNL1Q8IU54 200 aa9.28□□□□□ -0.92
SF3A3-202ENST00000460925 CHRDL2Q6WN34 429 aa9.27□□□□□ -0.93
SF3A3-202ENST00000460925 PIP4P2Q8N4L2 257 aa9.27□□□□□ -0.93
SF3A3-202ENST00000460925 UNC13AQ9UPW8 1703 aa9.27□□□□□ -0.93
SF3A3-202ENST00000460925 SCRIBQ14160 1630 aa9.26□□□□□ -0.93
SF3A3-202ENST00000460925 SOX12O15370 315 aa9.25□□□□□ -0.93
SF3A3-202ENST00000460925 MAP3K13O43283 966 aa9.25□□□□□ -0.93
SF3A3-202ENST00000460925 FBXO22Q8NEZ5 403 aa9.25□□□□□ -0.93
SF3A3-202ENST00000460925 WDR70Q9NW82 654 aa9.25□□□□□ -0.93
SF3A3-202ENST00000460925 NLRP6P59044 892 aa9.23□□□□□ -0.93
SF3A3-202ENST00000460925 EFCAB3Q8N7B9 438 aa9.22□□□□□ -0.93
SF3A3-202ENST00000460925 KCNV2Q8TDN2 545 aa9.21□□□□□ -0.94
SF3A3-202ENST00000460925 SHROOM4Q9ULL8 1493 aa9.21□□□□□ -0.94
SF3A3-202ENST00000460925 PPP1R37O75864 691 aa9.19□□□□□ -0.94
SF3A3-202ENST00000460925 CABP2Q9NPB3 220 aa9.19□□□□□ -0.94
SF3A3-202ENST00000460925 ZRANB1Q9UGI0 708 aa9.17□□□□□ -0.94
SF3A3-202ENST00000460925 PHF8Q9UPP1 1060 aa9.17□□□□□ -0.94
SF3A3-202ENST00000460925 ARHGEF1Q92888 912 aaKnown RBP9.15□□□□□ -0.94
SF3A3-202ENST00000460925 CD44P16070 742 aaKnown RBP9.14□□□□□ -0.95
SF3A3-202ENST00000460925 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.13□□□□□ -0.95
SF3A3-202ENST00000460925 E2F4Q16254 413 aa9.12□□□□□ -0.95
SF3A3-202ENST00000460925 MS4A4AQ96JQ5 239 aa9.11□□□□□ -0.95
SF3A3-202ENST00000460925 PHF12Q96QT6 1004 aa9.11□□□□□ -0.95
SF3A3-202ENST00000460925 BICRAQ9NZM4 1560 aa9.11□□□□□ -0.95
SF3A3-202ENST00000460925 MFSD10Q14728 455 aa9.09□□□□□ -0.95
SF3A3-202ENST00000460925 LMOD2Q6P5Q4 547 aa9.09□□□□□ -0.95
SF3A3-202ENST00000460925 NCKAP5LQ9HCH0 1330 aa9.08□□□□□ -0.96
SF3A3-202ENST00000460925 ARIH1Q9Y4X5 557 aaPredicted RBP9.08□□□□□ -0.96
SF3A3-202ENST00000460925 TULP1O00294 542 aaPredicted RBP9.07□□□□□ -0.96
SF3A3-202ENST00000460925 PDE4AP27815 886 aa9.07□□□□□ -0.96
SF3A3-202ENST00000460925 TMEM106CQ9BVX2 250 aa9.07□□□□□ -0.96
SF3A3-202ENST00000460925 CRISPLD2Q9H0B8 497 aa9.07□□□□□ -0.96
SF3A3-202ENST00000460925 C19orf67A6NJJ6 358 aa9.06□□□□□ -0.96
SF3A3-202ENST00000460925 ILDR1Q86SU0 546 aaPredicted RBP9.06□□□□□ -0.96
SF3A3-202ENST00000460925 TESPA1A2RU30 521 aaPredicted RBP9.04□□□□□ -0.96
SF3A3-202ENST00000460925 GOLGA2Q08379 1002 aa9.04□□□□□ -0.96
SF3A3-202ENST00000460925 MS4A3Q96HJ5 214 aa9.04□□□□□ -0.96
SF3A3-202ENST00000460925 TIE1P35590 1138 aa9.03□□□□□ -0.96
SF3A3-202ENST00000460925 LARP6Q9BRS8 491 aaKnown RBP9.03□□□□□ -0.96
SF3A3-202ENST00000460925 MKRN3Q13064 507 aaKnown RBP9.02□□□□□ -0.97
SF3A3-202ENST00000460925 CAMK2BQ13554 666 aa9.02□□□□□ -0.97
SF3A3-202ENST00000460925 TRPC6Q9Y210 931 aa9.02□□□□□ -0.97
SF3A3-202ENST00000460925 SEMA3EO15041 775 aa9□□□□□ -0.97
SF3A3-202ENST00000460925 DDX27Q96GQ7 796 aaKnown RBP9□□□□□ -0.97
SF3A3-202ENST00000460925 TTLL13PA6NNM8 815 aa8.98□□□□□ -0.97
SF3A3-202ENST00000460925 TMEM132AQ24JP5 1023 aa8.98□□□□□ -0.97
SF3A3-202ENST00000460925 ZC3H15Q8WU90 426 aaKnown RBP8.97□□□□□ -0.97
SF3A3-202ENST00000460925 SMYD5Q6GMV2 418 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms