RNA–Protein interactions for RNA: ENST00000454612.6

DDR1-240, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene DDR1, Length 3,942 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-240ENST00000454612 DDX10Q13206 875 aaKnown RBP16.05■□□□□ 0.16
DDR1-240ENST00000454612 KIF21BO75037 1637 aa16.05■□□□□ 0.16
DDR1-240ENST00000454612 MRC2Q9UBG0 1479 aa16.04■□□□□ 0.16
DDR1-240ENST00000454612 RAD54L2Q9Y4B4 1467 aa16.04■□□□□ 0.16
DDR1-240ENST00000454612 URB2Q14146 1524 aaKnown RBP16.04■□□□□ 0.16
DDR1-240ENST00000454612 VPS8Q8N3P4 1428 aa16.04■□□□□ 0.16
DDR1-240ENST00000454612 TRIM52Q96A61 297 aa16.03■□□□□ 0.16
DDR1-240ENST00000454612 BIVM-ERCC5R4GMW8 1640 aa16.03■□□□□ 0.16
DDR1-240ENST00000454612 POLA1P09884 1462 aaPredicted RBP16.01■□□□□ 0.15
DDR1-240ENST00000454612 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
DDR1-240ENST00000454612 CHIC2Q9UKJ5 165 aa15.99■□□□□ 0.15
DDR1-240ENST00000454612 SIN3AQ96ST3 1273 aa15.98■□□□□ 0.15
DDR1-240ENST00000454612 SENP3-EIF4A1A0A087X0R7 540 aa15.97■□□□□ 0.15
DDR1-240ENST00000454612 FBLN2P98095 1184 aa15.96■□□□□ 0.15
DDR1-240ENST00000454612 NEFLP07196 543 aa15.95■□□□□ 0.14
DDR1-240ENST00000454612 ZNF326Q5BKZ1 582 aaKnown RBP15.95■□□□□ 0.14
DDR1-240ENST00000454612 PRXQ9BXM0 1461 aa15.89■□□□□ 0.13
DDR1-240ENST00000454612 CARMIL1Q5VZK9 1371 aa15.87■□□□□ 0.13
DDR1-240ENST00000454612 AQRO60306 1485 aaKnown RBP eCLIP15.86■□□□□ 0.131e-7■■■■■ 41.3
DDR1-240ENST00000454612 ARAP1Q96P48 1450 aa15.85■□□□□ 0.13
DDR1-240ENST00000454612 BCL11AQ9H165 835 aa15.85■□□□□ 0.13
DDR1-240ENST00000454612 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
DDR1-240ENST00000454612 ABCA10Q8WWZ4 1543 aa15.84■□□□□ 0.13
DDR1-240ENST00000454612 KCNH8Q96L42 1107 aa15.84■□□□□ 0.13
DDR1-240ENST00000454612 IGF1RP08069 1367 aa15.83■□□□□ 0.13
DDR1-240ENST00000454612 WDR62O43379 1518 aa15.83■□□□□ 0.12
DDR1-240ENST00000454612 IFT140Q96RY7 1462 aa15.82■□□□□ 0.12
DDR1-240ENST00000454612 ZNF777Q9ULD5 760 aaPredicted RBP15.82■□□□□ 0.12
DDR1-240ENST00000454612 IRX6P78412 446 aaPredicted RBP15.81■□□□□ 0.12
DDR1-240ENST00000454612 RRP7BPQ9NSQ0 103 aa15.81■□□□□ 0.12
DDR1-240ENST00000454612 FKBP8Q14318 412 aa15.8■□□□□ 0.12
DDR1-240ENST00000454612 CHMP7Q8WUX9 453 aaPredicted RBP15.79■□□□□ 0.12
DDR1-240ENST00000454612 ERICH3Q5RHP9 1530 aa15.79■□□□□ 0.12
DDR1-240ENST00000454612 ZNF608Q9ULD9 1512 aaPredicted RBP15.78■□□□□ 0.12
DDR1-240ENST00000454612 THOC2Q8NI27 1593 aaKnown RBP15.78■□□□□ 0.12
DDR1-240ENST00000454612 ANP32CO43423 234 aa15.77■□□□□ 0.12
DDR1-240ENST00000454612 DHX57Q6P158 1386 aaKnown RBP15.73■□□□□ 0.11
DDR1-240ENST00000454612 ARHGAP35Q9NRY4 1499 aa15.73■□□□□ 0.11
DDR1-240ENST00000454612 GRIN2BQ13224 1484 aa15.71■□□□□ 0.11
DDR1-240ENST00000454612 TARBP1Q13395 1621 aaKnown RBP15.7■□□□□ 0.1
DDR1-240ENST00000454612 MYT1LQ9UL68 1186 aa15.68■□□□□ 0.1
DDR1-240ENST00000454612 FAM9BQ8IZU0 186 aa15.67■□□□□ 0.1
DDR1-240ENST00000454612 FOXD1Q16676 465 aa15.66■□□□□ 0.1
DDR1-240ENST00000454612 HNRNPUQ00839 825 aaKnown RBP eCLIP15.66■□□□□ 0.1
DDR1-240ENST00000454612 SNAPC4Q5SXM2 1469 aa15.66■□□□□ 0.1
DDR1-240ENST00000454612 CCNB3Q8WWL7 1395 aa15.65■□□□□ 0.1
DDR1-240ENST00000454612 TONSLQ96HA7 1378 aa15.65■□□□□ 0.1
DDR1-240ENST00000454612 SALL2Q9Y467 1007 aaPredicted RBP15.64■□□□□ 0.09
DDR1-240ENST00000454612 ABCA5Q8WWZ7 1642 aa15.64■□□□□ 0.09
DDR1-240ENST00000454612 MTUS2Q5JR59 1369 aa15.64■□□□□ 0.09
DDR1-240ENST00000454612 EIF4G3O43432 1585 aaKnown RBP15.64■□□□□ 0.09
DDR1-240ENST00000454612 FHAD1B1AJZ9 1412 aa15.63■□□□□ 0.09
DDR1-240ENST00000454612 RRBP1Q9P2E9 1410 aaKnown RBP15.63■□□□□ 0.09
DDR1-240ENST00000454612 WDR97A6NE52 1622 aa15.63■□□□□ 0.09
DDR1-240ENST00000454612 CUL7Q14999 1698 aa15.62■□□□□ 0.09
DDR1-240ENST00000454612 PBRM1Q86U86 1689 aa15.59■□□□□ 0.09
DDR1-240ENST00000454612 CLSPNQ9HAW4 1339 aa15.58■□□□□ 0.09
DDR1-240ENST00000454612 RAB3GAP2Q9H2M9 1393 aa15.58■□□□□ 0.08
DDR1-240ENST00000454612 SUPT16HQ9Y5B9 1047 aaKnown RBP15.57■□□□□ 0.08
DDR1-240ENST00000454612 KDM2AQ9Y2K7 1162 aa15.56■□□□□ 0.08
DDR1-240ENST00000454612 ANP32EQ9BTT0 268 aa15.54■□□□□ 0.08
DDR1-240ENST00000454612 PHLDB1Q86UU1 1377 aa15.53■□□□□ 0.08
DDR1-240ENST00000454612 MAGI1Q96QZ7 1491 aaPredicted RBP15.53■□□□□ 0.08
DDR1-240ENST00000454612 ADAMTS12P58397 1594 aa15.52■□□□□ 0.08
DDR1-240ENST00000454612 FHOD3Q2V2M9 1422 aa15.51■□□□□ 0.07
DDR1-240ENST00000454612 SYNJ2O15056 1496 aa15.51■□□□□ 0.07
DDR1-240ENST00000454612 SENP3Q9H4L4 574 aaPredicted RBP15.5■□□□□ 0.07
DDR1-240ENST00000454612 GRIN2AQ12879 1464 aa15.5■□□□□ 0.07
DDR1-240ENST00000454612 TIAM1Q13009 1591 aa15.48■□□□□ 0.07
DDR1-240ENST00000454612 LRRC9Q6ZRR7 1453 aa15.48■□□□□ 0.07
DDR1-240ENST00000454612 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.48■□□□□ 0.07
DDR1-240ENST00000454612 SLC4A1APQ9BWU0 796 aaKnown RBP15.45■□□□□ 0.06
DDR1-240ENST00000454612 JPH4Q96JJ6 628 aa15.44■□□□□ 0.06
DDR1-240ENST00000454612 MRS2Q9HD23 443 aa15.44■□□□□ 0.06
DDR1-240ENST00000454612 SETD5Q9C0A6 1442 aa15.44■□□□□ 0.06
DDR1-240ENST00000454612 CTTNBP2Q8WZ74 1663 aa15.41■□□□□ 0.06
DDR1-240ENST00000454612 IQGAP2Q13576 1575 aa15.41■□□□□ 0.06
DDR1-240ENST00000454612 MAPKBP1O60336 1514 aa15.4■□□□□ 0.06
DDR1-240ENST00000454612 RGL3Q3MIN7 710 aa15.4■□□□□ 0.06
DDR1-240ENST00000454612 PCF11O94913 1555 aaKnown RBP15.4■□□□□ 0.06
DDR1-240ENST00000454612 TSHZ2Q9NRE2 1034 aa15.4■□□□□ 0.06
DDR1-240ENST00000454612 KIAA0586Q9BVV6 1533 aa15.39■□□□□ 0.05
DDR1-240ENST00000454612 MAP3K1Q13233 1512 aa15.38■□□□□ 0.05
DDR1-240ENST00000454612 CARMIL2Q6F5E8 1435 aa15.38■□□□□ 0.05
DDR1-240ENST00000454612 PPP1R15AO75807 674 aaPredicted RBP15.37■□□□□ 0.05
DDR1-240ENST00000454612 EIF4G2P78344 907 aaKnown RBP eCLIP15.36■□□□□ 0.058e-8■■■■■ 39.6
DDR1-240ENST00000454612 CDK11AQ9UQ88 783 aaPredicted RBP15.36■□□□□ 0.05
DDR1-240ENST00000454612 FMN1Q68DA7 1419 aa15.35■□□□□ 0.05
DDR1-240ENST00000454612 EFCAB5A4FU69 1503 aa15.34■□□□□ 0.05
DDR1-240ENST00000454612 OSCARQ8IYS5 282 aa15.34■□□□□ 0.05
DDR1-240ENST00000454612 HSPA5P11021 654 aaKnown RBP15.33■□□□□ 0.05
DDR1-240ENST00000454612 CEP170Q5SW79 1584 aa15.32■□□□□ 0.04
DDR1-240ENST00000454612 CHD1O14646 1710 aa15.32■□□□□ 0.04
DDR1-240ENST00000454612 CASKIN1Q8WXD9 1431 aa15.31■□□□□ 0.04
DDR1-240ENST00000454612 EIF5BO60841 1220 aaKnown RBP15.31■□□□□ 0.04
DDR1-240ENST00000454612 NPM2Q86SE8 214 aaKnown RBP15.31■□□□□ 0.04
DDR1-240ENST00000454612 PRG4Q92954 1404 aaPredicted RBP15.3■□□□□ 0.04
DDR1-240ENST00000454612 NUP160Q12769 1436 aa15.3■□□□□ 0.04
DDR1-240ENST00000454612 CFDP1Q9UEE9 299 aaPredicted RBP15.29■□□□□ 0.04
DDR1-240ENST00000454612 PRKCSHP14314 528 aaPredicted RBP15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms