RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 PRG4Q92954 1404 aaPredicted RBP20.77■□□□□ 0.91
USP40-210ENST00000454354 CARMIL1Q5VZK9 1371 aa20.74■□□□□ 0.91
USP40-210ENST00000454354 JPH4Q96JJ6 628 aa20.74■□□□□ 0.91
USP40-210ENST00000454354 TRHP20396 242 aaPredicted RBP20.66■□□□□ 0.9
USP40-210ENST00000454354 IQGAP2Q13576 1575 aa20.66■□□□□ 0.9
USP40-210ENST00000454354 RAPGEF2Q9Y4G8 1499 aa20.63■□□□□ 0.89
USP40-210ENST00000454354 CTTNBP2Q8WZ74 1663 aa20.6■□□□□ 0.89
USP40-210ENST00000454354 ADCY10Q96PN6 1610 aa20.6■□□□□ 0.89
USP40-210ENST00000454354 KIF13AQ9H1H9 1805 aa20.57■□□□□ 0.88
USP40-210ENST00000454354 MAPKBP1O60336 1514 aa20.53■□□□□ 0.88
USP40-210ENST00000454354 UGGT2Q9NYU1 1516 aa20.53■□□□□ 0.88
USP40-210ENST00000454354 CARMIL2Q6F5E8 1435 aa20.53■□□□□ 0.88
USP40-210ENST00000454354 PRXQ9BXM0 1461 aa20.51■□□□□ 0.87
USP40-210ENST00000454354 DISP1Q96F81 1524 aa20.51■□□□□ 0.87
USP40-210ENST00000454354 KIAA0556O60303 1618 aa20.48■□□□□ 0.87
USP40-210ENST00000454354 TNIKQ9UKE5 1360 aa20.47■□□□□ 0.87
USP40-210ENST00000454354 PTPRGP23470 1445 aa20.46■□□□□ 0.87
USP40-210ENST00000454354 DIP2BQ9P265 1576 aa20.43■□□□□ 0.86
USP40-210ENST00000454354 UHRF1BP1LA0JNW5 1464 aa20.41■□□□□ 0.86
USP40-210ENST00000454354 ABCC10Q5T3U5 1492 aa20.41■□□□□ 0.86
USP40-210ENST00000454354 ABCC2Q92887 1545 aa20.39■□□□□ 0.85
USP40-210ENST00000454354 EEA1Q15075 1411 aa20.39■□□□□ 0.85
USP40-210ENST00000454354 NPM1P06748 294 aaKnown RBP eCLIP20.39■□□□□ 0.85
USP40-210ENST00000454354 GOLGA3Q08378 1498 aa20.36■□□□□ 0.85
USP40-210ENST00000454354 UACAQ9BZF9 1416 aa20.36■□□□□ 0.85
USP40-210ENST00000454354 CSRNP3Q8WYN3 585 aa20.32■□□□□ 0.84
USP40-210ENST00000454354 KDM5BQ9UGL1 1544 aa20.31■□□□□ 0.84
USP40-210ENST00000454354 ZCCHC11Q5TAX3 1644 aaKnown RBP20.31■□□□□ 0.84
USP40-210ENST00000454354 TTBK1Q5TCY1 1321 aaPredicted RBP20.29■□□□□ 0.84
USP40-210ENST00000454354 SAMD9Q5K651 1589 aa20.28■□□□□ 0.84
USP40-210ENST00000454354 KIF21BO75037 1637 aa20.27■□□□□ 0.84
USP40-210ENST00000454354 TSPOAP1O95153 1857 aa20.27■□□□□ 0.84
USP40-210ENST00000454354 FAM69CQ0P6D2 419 aa20.27■□□□□ 0.84
USP40-210ENST00000454354 ABCA8O94911 1581 aa20.26■□□□□ 0.83
USP40-210ENST00000454354 PLB1Q6P1J6 1458 aa20.26■□□□□ 0.83
USP40-210ENST00000454354 ASXL2Q76L83 1435 aa20.26■□□□□ 0.83
USP40-210ENST00000454354 GLI2P10070 1586 aa20.25■□□□□ 0.83
USP40-210ENST00000454354 PPRC1Q5VV67 1664 aaKnown RBP20.22■□□□□ 0.83
USP40-210ENST00000454354 MAP3K4Q9Y6R4 1608 aa20.18■□□□□ 0.82
USP40-210ENST00000454354 CHIC1Q5VXU3 224 aa20.18■□□□□ 0.82
USP40-210ENST00000454354 EPRSP07814 1512 aaKnown RBP20.17■□□□□ 0.82
USP40-210ENST00000454354 KDM6BO15054 1643 aa20.16■□□□□ 0.82
USP40-210ENST00000454354 WDR7Q9Y4E6 1490 aa20.13■□□□□ 0.81
USP40-210ENST00000454354 FAM9AQ8IZU1 332 aaPredicted RBP20.11■□□□□ 0.81
USP40-210ENST00000454354 RAPGEF6Q8TEU7 1601 aa20.11■□□□□ 0.81
USP40-210ENST00000454354 EFCAB5A4FU69 1503 aa20.1■□□□□ 0.81
USP40-210ENST00000454354 CFAP43Q8NDM7 1665 aa20.09■□□□□ 0.81
USP40-210ENST00000454354 P3H3Q8IVL6 736 aa20.05■□□□□ 0.8
USP40-210ENST00000454354 ATP10BO94823 1461 aa20.03■□□□□ 0.8
USP40-210ENST00000454354 TEX14Q8IWB6 1497 aa20.03■□□□□ 0.8
USP40-210ENST00000454354 FHOD3Q2V2M9 1422 aa20.02■□□□□ 0.8
USP40-210ENST00000454354 NUP153P49790 1475 aaKnown RBP19.99■□□□□ 0.79
USP40-210ENST00000454354 MAGI3Q5TCQ9 1506 aa19.97■□□□□ 0.79
USP40-210ENST00000454354 ABCA9Q8IUA7 1624 aa19.96■□□□□ 0.79
USP40-210ENST00000454354 CD109Q6YHK3 1445 aa19.93■□□□□ 0.78
USP40-210ENST00000454354 RANGAP1P46060 587 aaPredicted RBP19.93■□□□□ 0.78
USP40-210ENST00000454354 COL17A1Q9UMD9 1497 aaPredicted RBP19.92■□□□□ 0.78
USP40-210ENST00000454354 KCNH8Q96L42 1107 aa19.9■□□□□ 0.78
USP40-210ENST00000454354 ARHGAP35Q9NRY4 1499 aa19.9■□□□□ 0.78
USP40-210ENST00000454354 ARID3CA6NKF2 412 aa19.89■□□□□ 0.77
USP40-210ENST00000454354 UBTFP17480 764 aaKnown RBP19.89■□□□□ 0.77
USP40-210ENST00000454354 HECW1Q76N89 1606 aa19.86■□□□□ 0.77
USP40-210ENST00000454354 FMN1Q68DA7 1419 aa19.85■□□□□ 0.77
USP40-210ENST00000454354 EHMT2Q96KQ7 1210 aa19.84■□□□□ 0.77
USP40-210ENST00000454354 AEBP2Q6ZN18 517 aaPredicted RBP19.83■□□□□ 0.77
USP40-210ENST00000454354 ARAP3Q8WWN8 1544 aa19.81■□□□□ 0.76
USP40-210ENST00000454354 LRRIQ1Q96JM4 1722 aa19.81■□□□□ 0.76
USP40-210ENST00000454354 CDK13Q14004 1512 aaKnown RBP19.81■□□□□ 0.76
USP40-210ENST00000454354 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.79■□□□□ 0.76
USP40-210ENST00000454354 HNRNPUL2Q1KMD3 747 aaKnown RBP19.79■□□□□ 0.76
USP40-210ENST00000454354 NEO1Q92859 1461 aa19.78■□□□□ 0.76
USP40-210ENST00000454354 TTC37Q6PGP7 1564 aa19.78■□□□□ 0.76
USP40-210ENST00000454354 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.77■□□□□ 0.76
USP40-210ENST00000454354 PHLDB1Q86UU1 1377 aa19.77■□□□□ 0.76
USP40-210ENST00000454354 CFAP74Q9C0B2 1584 aa19.75■□□□□ 0.75
USP40-210ENST00000454354 PLEKHD1A6NEE1 506 aa19.74■□□□□ 0.75
USP40-210ENST00000454354 PCF11O94913 1555 aaKnown RBP19.72■□□□□ 0.75
USP40-210ENST00000454354 FRMPD1Q5SYB0 1578 aa19.71■□□□□ 0.75
USP40-210ENST00000454354 KDM4FA0A1W2PPD8 638 aa19.71■□□□□ 0.75
USP40-210ENST00000454354 ADGRL1O94910 1474 aa19.7■□□□□ 0.74
USP40-210ENST00000454354 MYO5CQ9NQX4 1742 aa19.7■□□□□ 0.74
USP40-210ENST00000454354 RICTORQ6R327 1708 aa19.69■□□□□ 0.74
USP40-210ENST00000454354 CASKIN1Q8WXD9 1431 aa19.68■□□□□ 0.74
USP40-210ENST00000454354 KIF14Q15058 1648 aa19.67■□□□□ 0.74
USP40-210ENST00000454354 FANCAO15360 1455 aa19.66■□□□□ 0.74
USP40-210ENST00000454354 CCDC18Q5T9S5 1454 aa19.66■□□□□ 0.74
USP40-210ENST00000454354 CLIP1P30622 1438 aa19.65■□□□□ 0.74
USP40-210ENST00000454354 FYCO1Q9BQS8 1478 aa19.65■□□□□ 0.74
USP40-210ENST00000454354 TROQ12816 1431 aaPredicted RBP19.63■□□□□ 0.73
USP40-210ENST00000454354 AKNAQ7Z591 1439 aa19.62■□□□□ 0.73
USP40-210ENST00000454354 CDK11AQ9UQ88 783 aaPredicted RBP19.61■□□□□ 0.73
USP40-210ENST00000454354 PLCH2O75038 1416 aa19.6■□□□□ 0.73
USP40-210ENST00000454354 ATP1B4Q9UN42 357 aaPredicted RBP19.6■□□□□ 0.73
USP40-210ENST00000454354 ZMYM4Q5VZL5 1548 aa19.6■□□□□ 0.73
USP40-210ENST00000454354 ARHGEF40Q8TER5 1519 aa19.6■□□□□ 0.73
USP40-210ENST00000454354 DENND4BO75064 1496 aaPredicted RBP19.6■□□□□ 0.73
USP40-210ENST00000454354 RAPGEF3O95398 923 aa19.58■□□□□ 0.72
USP40-210ENST00000454354 CDC42BPBQ9Y5S2 1711 aa19.57■□□□□ 0.72
USP40-210ENST00000454354 PREX2Q70Z35 1606 aa19.55■□□□□ 0.72
USP40-210ENST00000454354 CDC42BPAQ5VT25 1732 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms