RNA–Protein interactions for RNA: ENST00000449880.6

ITGB4-202, Transcript of integrin subunit beta 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ITGB4, Length 5,689 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB4-202ENST00000449880 MTUS2Q5JR59 1369 aa18.67■□□□□ 0.58
ITGB4-202ENST00000449880 BCL11AQ9H165 835 aa18.65■□□□□ 0.58
ITGB4-202ENST00000449880 DDX10Q13206 875 aaKnown RBP18.65■□□□□ 0.58
ITGB4-202ENST00000449880 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.62■□□□□ 0.57
ITGB4-202ENST00000449880 CHMP7Q8WUX9 453 aaPredicted RBP18.6■□□□□ 0.57
ITGB4-202ENST00000449880 CHIC2Q9UKJ5 165 aa18.59■□□□□ 0.57
ITGB4-202ENST00000449880 SMARCA4P51532 1647 aa18.59■□□□□ 0.57
ITGB4-202ENST00000449880 STAG3Q9UJ98 1225 aa18.58■□□□□ 0.57
ITGB4-202ENST00000449880 NPM1P06748 294 aaKnown RBP eCLIP18.58■□□□□ 0.56
ITGB4-202ENST00000449880 PPM1GO15355 546 aaPredicted RBP18.57■□□□□ 0.56
ITGB4-202ENST00000449880 HSP90AA1P07900 732 aaKnown RBP18.57■□□□□ 0.56
ITGB4-202ENST00000449880 FAM9BQ8IZU0 186 aa18.54■□□□□ 0.56
ITGB4-202ENST00000449880 CUX2O14529 1486 aa18.52■□□□□ 0.56
ITGB4-202ENST00000449880 CHGAP10645 457 aaKnown RBP18.51■□□□□ 0.55
ITGB4-202ENST00000449880 ERICH6BQ5W0A0 696 aa18.51■□□□□ 0.55
ITGB4-202ENST00000449880 BECN1Q14457 450 aa18.49■□□□□ 0.55
ITGB4-202ENST00000449880 CARMIL1Q5VZK9 1371 aa18.48■□□□□ 0.55
ITGB4-202ENST00000449880 SUPT16HQ9Y5B9 1047 aaKnown RBP18.48■□□□□ 0.55
ITGB4-202ENST00000449880 ATAD2BQ9ULI0 1458 aa18.47■□□□□ 0.55
ITGB4-202ENST00000449880 MRS2Q9HD23 443 aa18.47■□□□□ 0.55
ITGB4-202ENST00000449880 TMC1Q8TDI8 760 aa18.45■□□□□ 0.54
ITGB4-202ENST00000449880 NOP58Q9Y2X3 529 aaKnown RBP18.43■□□□□ 0.54
ITGB4-202ENST00000449880 PPP4R2Q9NY27 417 aa18.42■□□□□ 0.54
ITGB4-202ENST00000449880 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
ITGB4-202ENST00000449880 TSPY4P0CV99 314 aa18.41■□□□□ 0.54
ITGB4-202ENST00000449880 TSPY10P0CW01 314 aa18.41■□□□□ 0.54
ITGB4-202ENST00000449880 TNNT2P45379 298 aaPredicted RBP18.41■□□□□ 0.54
ITGB4-202ENST00000449880 TRIM44Q96DX7 344 aaPredicted RBP18.41■□□□□ 0.54
ITGB4-202ENST00000449880 RRP7BPQ9NSQ0 103 aa18.41■□□□□ 0.54
ITGB4-202ENST00000449880 FHAD1B1AJZ9 1412 aa18.4■□□□□ 0.54
ITGB4-202ENST00000449880 ERCC6Q03468 1493 aa18.37■□□□□ 0.53
ITGB4-202ENST00000449880 PLPPR3Q6T4P5 718 aa18.36■□□□□ 0.53
ITGB4-202ENST00000449880 PLEKHD1A6NEE1 506 aa18.33■□□□□ 0.53
ITGB4-202ENST00000449880 CCNB3Q8WWL7 1395 aa18.33■□□□□ 0.53
ITGB4-202ENST00000449880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.33■□□□□ 0.53
ITGB4-202ENST00000449880 EIF4G2P78344 907 aaKnown RBP eCLIP18.32■□□□□ 0.52
ITGB4-202ENST00000449880 IRX6P78412 446 aaPredicted RBP18.32■□□□□ 0.52
ITGB4-202ENST00000449880 GOLGA6L22H0YM25 854 aa18.31■□□□□ 0.52
ITGB4-202ENST00000449880 CADPSQ9ULU8 1353 aa18.31■□□□□ 0.52
ITGB4-202ENST00000449880 EIF4G1Q04637 1599 aaKnown RBP18.31■□□□□ 0.52
ITGB4-202ENST00000449880 PDS5BQ9NTI5 1447 aa18.29■□□□□ 0.52
ITGB4-202ENST00000449880 WDR43Q15061 677 aaKnown RBP eCLIP18.29■□□□□ 0.52
ITGB4-202ENST00000449880 DEKP35659 375 aaKnown RBP18.27■□□□□ 0.52
ITGB4-202ENST00000449880 HIRIP3Q9BW71 556 aaPredicted RBP18.26■□□□□ 0.51
ITGB4-202ENST00000449880 CFDP1Q9UEE9 299 aaPredicted RBP18.25■□□□□ 0.51
ITGB4-202ENST00000449880 CCER2I3L3R5 266 aa18.24■□□□□ 0.51
ITGB4-202ENST00000449880 KANK4Q5T7N3 995 aaPredicted RBP18.23■□□□□ 0.51
ITGB4-202ENST00000449880 KDM2AQ9Y2K7 1162 aa18.23■□□□□ 0.51
ITGB4-202ENST00000449880 RUSC2Q8N2Y8 1516 aa18.22■□□□□ 0.51
ITGB4-202ENST00000449880 RBM19Q9Y4C8 960 aaKnown RBP18.22■□□□□ 0.51
ITGB4-202ENST00000449880 RAPGEF2Q9Y4G8 1499 aa18.22■□□□□ 0.51
ITGB4-202ENST00000449880 KCNH8Q96L42 1107 aa18.21■□□□□ 0.5
ITGB4-202ENST00000449880 NAP1L5Q96NT1 182 aaPredicted RBP18.21■□□□□ 0.5
ITGB4-202ENST00000449880 L1TD1Q5T7N2 865 aaKnown RBP18.2■□□□□ 0.5
ITGB4-202ENST00000449880 ARXQ96QS3 562 aa18.2■□□□□ 0.5
ITGB4-202ENST00000449880 TIMELESSQ9UNS1 1208 aa18.18■□□□□ 0.5
ITGB4-202ENST00000449880 ARHGAP35Q9NRY4 1499 aa18.18■□□□□ 0.5
ITGB4-202ENST00000449880 TDRD9Q8NDG6 1382 aaKnown RBP18.17■□□□□ 0.5
ITGB4-202ENST00000449880 NCLP19338 710 aaKnown RBP18.17■□□□□ 0.5
ITGB4-202ENST00000449880 SIN3AQ96ST3 1273 aa18.16■□□□□ 0.5
ITGB4-202ENST00000449880 SALL2Q9Y467 1007 aaPredicted RBP18.15■□□□□ 0.5
ITGB4-202ENST00000449880 MYH16Q9H6N6 1097 aa18.14■□□□□ 0.49
ITGB4-202ENST00000449880 SETD5Q9C0A6 1442 aa18.13■□□□□ 0.49
ITGB4-202ENST00000449880 FMN1Q68DA7 1419 aa18.13■□□□□ 0.49
ITGB4-202ENST00000449880 TSHZ2Q9NRE2 1034 aa18.1■□□□□ 0.49
ITGB4-202ENST00000449880 LAS1LQ9Y4W2 734 aaKnown RBP18.09■□□□□ 0.49
ITGB4-202ENST00000449880 FANCD2Q9BXW9 1451 aa18.09■□□□□ 0.49
ITGB4-202ENST00000449880 RTN4Q9NQC3 1192 aaKnown RBP18.08■□□□□ 0.49
ITGB4-202ENST00000449880 PPP1R15AO75807 674 aaPredicted RBP18.06■□□□□ 0.48
ITGB4-202ENST00000449880 NCAPD3P42695 1498 aa18.05■□□□□ 0.48
ITGB4-202ENST00000449880 PTMAP06454 111 aaKnown RBP18.05■□□□□ 0.48
ITGB4-202ENST00000449880 A0A0G2JS52 829 aa18.05■□□□□ 0.48
ITGB4-202ENST00000449880 FHOD3Q2V2M9 1422 aa18.03■□□□□ 0.48
ITGB4-202ENST00000449880 RGL3Q3MIN7 710 aa18.01■□□□□ 0.47
ITGB4-202ENST00000449880 RAB3GAP2Q9H2M9 1393 aa18.01■□□□□ 0.47
ITGB4-202ENST00000449880 PTMSP20962 102 aa18■□□□□ 0.47
ITGB4-202ENST00000449880 CARMIL2Q6F5E8 1435 aa18■□□□□ 0.47
ITGB4-202ENST00000449880 CDK11BP21127 795 aaKnown RBP17.99■□□□□ 0.47
ITGB4-202ENST00000449880 DNTTIP2Q5QJE6 756 aaKnown RBP17.99■□□□□ 0.47
ITGB4-202ENST00000449880 C14orf37Q86TY3 774 aa17.99■□□□□ 0.47
ITGB4-202ENST00000449880 CASC1Q6TDU7 716 aa17.98■□□□□ 0.47
ITGB4-202ENST00000449880 CDCA8Q53HL2 280 aa17.96■□□□□ 0.47
ITGB4-202ENST00000449880 B4GALNT3Q6L9W6 998 aa17.96■□□□□ 0.47
ITGB4-202ENST00000449880 FGD5Q6ZNL6 1462 aa17.96■□□□□ 0.47
ITGB4-202ENST00000449880 CARD11Q9BXL7 1154 aa17.96■□□□□ 0.47
ITGB4-202ENST00000449880 ZBTB7CA1YPR0 619 aa17.96■□□□□ 0.47
ITGB4-202ENST00000449880 TCERG1O14776 1098 aaKnown RBP17.94■□□□□ 0.46
ITGB4-202ENST00000449880 USP35Q9P2H5 1018 aa17.94■□□□□ 0.46
ITGB4-202ENST00000449880 MS4A1P11836 297 aa17.94■□□□□ 0.46
ITGB4-202ENST00000449880 CHMP4BQ9H444 224 aaKnown RBP17.93■□□□□ 0.46
ITGB4-202ENST00000449880 MSNP26038 577 aaKnown RBP17.92■□□□□ 0.46
ITGB4-202ENST00000449880 IGF1RP08069 1367 aa17.92■□□□□ 0.46
ITGB4-202ENST00000449880 CFAP53Q96M91 514 aa17.91■□□□□ 0.46
ITGB4-202ENST00000449880 HAP1P54257 671 aaPredicted RBP17.91■□□□□ 0.46
ITGB4-202ENST00000449880 IPO9Q96P70 1041 aaKnown RBP17.9■□□□□ 0.46
ITGB4-202ENST00000449880 SYNJ1O43426 1573 aa17.89■□□□□ 0.45
ITGB4-202ENST00000449880 CHAF1AQ13111 956 aaPredicted RBP17.88■□□□□ 0.45
ITGB4-202ENST00000449880 CFAP44Q96MT7 982 aa17.88■□□□□ 0.45
ITGB4-202ENST00000449880 KIF21BO75037 1637 aa17.87■□□□□ 0.45
ITGB4-202ENST00000449880 RSPH6AQ9H0K4 717 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms