RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 CEP162Q5TB80 1403 aa31.04■■■□□ 2.56
RPS28-202ENST00000449223 CEP170Q5SW79 1584 aa31.04■■■□□ 2.56
RPS28-202ENST00000449223 KIAA0586Q9BVV6 1533 aa31.01■■■□□ 2.55
RPS28-202ENST00000449223 IQGAP2Q13576 1575 aa30.99■■■□□ 2.55
RPS28-202ENST00000449223 FBLN2P98095 1184 aa30.98■■■□□ 2.55
RPS28-202ENST00000449223 CLIP1P30622 1438 aa30.93■■■□□ 2.54
RPS28-202ENST00000449223 EFCAB5A4FU69 1503 aa30.87■■■□□ 2.53
RPS28-202ENST00000449223 UGGT2Q9NYU1 1516 aa30.87■■■□□ 2.53
RPS28-202ENST00000449223 SAMD9Q5K651 1589 aa30.84■■■□□ 2.53
RPS28-202ENST00000449223 ARHGAP35Q9NRY4 1499 aa30.84■■■□□ 2.53
RPS28-202ENST00000449223 CLASP1Q7Z460 1538 aa30.83■■■□□ 2.53
RPS28-202ENST00000449223 SHROOM2Q13796 1616 aa30.77■■■□□ 2.52
RPS28-202ENST00000449223 ARAP1Q96P48 1450 aa30.73■■■□□ 2.51
RPS28-202ENST00000449223 DISP1Q96F81 1524 aa30.7■■■□□ 2.51
RPS28-202ENST00000449223 RANGAP1P46060 587 aaPredicted RBP30.68■■■□□ 2.5
RPS28-202ENST00000449223 KIAA0556O60303 1618 aa30.68■■■□□ 2.5
RPS28-202ENST00000449223 JPH4Q96JJ6 628 aa30.68■■■□□ 2.5
RPS28-202ENST00000449223 OSCARQ8IYS5 282 aa30.64■■■□□ 2.5
RPS28-202ENST00000449223 VPS8Q8N3P4 1428 aa30.63■■■□□ 2.49
RPS28-202ENST00000449223 FHOD3Q2V2M9 1422 aa30.6■■■□□ 2.49
RPS28-202ENST00000449223 CARMIL2Q6F5E8 1435 aa30.6■■■□□ 2.49
RPS28-202ENST00000449223 PRG4Q92954 1404 aaPredicted RBP30.56■■■□□ 2.48
RPS28-202ENST00000449223 FMN1Q68DA7 1419 aa30.54■■■□□ 2.48
RPS28-202ENST00000449223 P3H3Q8IVL6 736 aa30.5■■■□□ 2.47
RPS28-202ENST00000449223 ERCC6L2Q5T890 1561 aa30.43■■■□□ 2.46
RPS28-202ENST00000449223 FYCO1Q9BQS8 1478 aa30.41■■■□□ 2.46
RPS28-202ENST00000449223 PCF11O94913 1555 aaKnown RBP30.41■■■□□ 2.46
RPS28-202ENST00000449223 CASKIN1Q8WXD9 1431 aa30.41■■■□□ 2.46
RPS28-202ENST00000449223 PTPRGP23470 1445 aa30.3■■■□□ 2.44
RPS28-202ENST00000449223 MAP3K1Q13233 1512 aa30.3■■■□□ 2.44
RPS28-202ENST00000449223 RAPGEF6Q8TEU7 1601 aa30.3■■■□□ 2.44
RPS28-202ENST00000449223 HECW1Q76N89 1606 aa30.29■■■□□ 2.44
RPS28-202ENST00000449223 ABCA8O94911 1581 aa30.29■■■□□ 2.44
RPS28-202ENST00000449223 PLB1Q6P1J6 1458 aa30.24■■■□□ 2.43
RPS28-202ENST00000449223 LRRIQ1Q96JM4 1722 aa30.23■■■□□ 2.43
RPS28-202ENST00000449223 CFAP43Q8NDM7 1665 aa30.23■■■□□ 2.43
RPS28-202ENST00000449223 ARHGEF11O15085 1522 aa30.22■■■□□ 2.43
RPS28-202ENST00000449223 TIAM1Q13009 1591 aa30.21■■■□□ 2.43
RPS28-202ENST00000449223 NUP153P49790 1475 aaKnown RBP30.2■■■□□ 2.43
RPS28-202ENST00000449223 CCDC18Q5T9S5 1454 aa30.19■■■□□ 2.42
RPS28-202ENST00000449223 UACAQ9BZF9 1416 aa30.17■■■□□ 2.42
RPS28-202ENST00000449223 EPRSP07814 1512 aaKnown RBP30.16■■■□□ 2.42
RPS28-202ENST00000449223 UHRF1BP1LA0JNW5 1464 aa30.14■■■□□ 2.42
RPS28-202ENST00000449223 ABCC2Q92887 1545 aa30.14■■■□□ 2.42
RPS28-202ENST00000449223 APLP2Q06481 763 aa30.14■■■□□ 2.42
RPS28-202ENST00000449223 TTBK1Q5TCY1 1321 aaPredicted RBP30.12■■■□□ 2.41
RPS28-202ENST00000449223 RIMBP3CA6NJZ7 1639 aa30.11■■■□□ 2.41
RPS28-202ENST00000449223 RIMBP3BA6NNM3 1639 aa30.11■■■□□ 2.41
RPS28-202ENST00000449223 RIMBP3Q9UFD9 1639 aa30.11■■■□□ 2.41
RPS28-202ENST00000449223 CDK13Q14004 1512 aaKnown RBP30.05■■■□□ 2.4
RPS28-202ENST00000449223 ATP1B4Q9UN42 357 aaPredicted RBP30.05■■■□□ 2.4
RPS28-202ENST00000449223 LRRC9Q6ZRR7 1453 aa30.04■■■□□ 2.4
RPS28-202ENST00000449223 ADCY10Q96PN6 1610 aa30.02■■■□□ 2.4
RPS28-202ENST00000449223 ATP10BO94823 1461 aa30.01■■■□□ 2.39
RPS28-202ENST00000449223 KDM5BQ9UGL1 1544 aa29.99■■■□□ 2.39
RPS28-202ENST00000449223 KANK4Q5T7N3 995 aaPredicted RBP29.98■■■□□ 2.39
RPS28-202ENST00000449223 EHBP1L1Q8N3D4 1523 aa29.97■■■□□ 2.39
RPS28-202ENST00000449223 MAGI3Q5TCQ9 1506 aa29.95■■■□□ 2.38
RPS28-202ENST00000449223 ZCCHC11Q5TAX3 1644 aaKnown RBP29.92■■■□□ 2.38
RPS28-202ENST00000449223 MTUS2Q5JR59 1369 aa29.89■■■□□ 2.38
RPS28-202ENST00000449223 CDK11AQ9UQ88 783 aaPredicted RBP29.88■■■□□ 2.37
RPS28-202ENST00000449223 PPARGC1BQ86YN6 1023 aaKnown RBP29.86■■■□□ 2.37
RPS28-202ENST00000449223 ARID3CA6NKF2 412 aa29.85■■■□□ 2.37
RPS28-202ENST00000449223 TROQ12816 1431 aaPredicted RBP29.85■■■□□ 2.37
RPS28-202ENST00000449223 SUPT6HQ7KZ85 1726 aaKnown RBP29.85■■■□□ 2.37
RPS28-202ENST00000449223 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.79■■■□□ 2.36
RPS28-202ENST00000449223 HNRNPUL2Q1KMD3 747 aaKnown RBP29.79■■■□□ 2.36
RPS28-202ENST00000449223 PLEKHD1A6NEE1 506 aa29.76■■■□□ 2.36
RPS28-202ENST00000449223 CYB5RLQ6IPT4 315 aa29.76■■■□□ 2.36
RPS28-202ENST00000449223 NCOA2Q15596 1464 aa29.75■■■□□ 2.35
RPS28-202ENST00000449223 KIF14Q15058 1648 aa29.73■■■□□ 2.35
RPS28-202ENST00000449223 PHLDB1Q86UU1 1377 aa29.68■■■□□ 2.34
RPS28-202ENST00000449223 WDR7Q9Y4E6 1490 aa29.68■■■□□ 2.34
RPS28-202ENST00000449223 MAPKBP1O60336 1514 aa29.67■■■□□ 2.34
RPS28-202ENST00000449223 NPM1P06748 294 aaKnown RBP eCLIP29.66■■■□□ 2.34
RPS28-202ENST00000449223 TRIM26Q12899 539 aaPredicted RBP29.65■■■□□ 2.34
RPS28-202ENST00000449223 DNAJC5Q9H3Z4 198 aa29.65■■■□□ 2.34
RPS28-202ENST00000449223 ASXL2Q76L83 1435 aa29.65■■■□□ 2.34
RPS28-202ENST00000449223 RRBP1Q9P2E9 1410 aaKnown RBP29.65■■■□□ 2.34
RPS28-202ENST00000449223 ABCC10Q5T3U5 1492 aa29.65■■■□□ 2.34
RPS28-202ENST00000449223 MYOM3Q5VTT5 1437 aa29.62■■■□□ 2.33
RPS28-202ENST00000449223 ITSN2Q9NZM3 1697 aa29.59■■■□□ 2.33
RPS28-202ENST00000449223 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP29.57■■■□□ 2.333e-7■□□□□ 9.3
RPS28-202ENST00000449223 FGD6Q6ZV73 1430 aa29.56■■■□□ 2.32
RPS28-202ENST00000449223 MIA2Q96PC5 1412 aa29.56■■■□□ 2.32
RPS28-202ENST00000449223 CDC42BPAQ5VT25 1732 aa29.55■■■□□ 2.32
RPS28-202ENST00000449223 TTC37Q6PGP7 1564 aa29.54■■■□□ 2.32
RPS28-202ENST00000449223 GPATCH8Q9UKJ3 1502 aaKnown RBP29.54■■■□□ 2.32
RPS28-202ENST00000449223 CCNB3Q8WWL7 1395 aa29.54■■■□□ 2.32
RPS28-202ENST00000449223 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.52■■■□□ 2.326e-8■■■■□ 21.9
RPS28-202ENST00000449223 ABCA9Q8IUA7 1624 aa29.52■■■□□ 2.32
RPS28-202ENST00000449223 PREX2Q70Z35 1606 aa29.5■■■□□ 2.31
RPS28-202ENST00000449223 MYO5CQ9NQX4 1742 aa29.48■■■□□ 2.31
RPS28-202ENST00000449223 TCOF1Q13428 1488 aaKnown RBP29.47■■■□□ 2.31
RPS28-202ENST00000449223 PTPN23Q9H3S7 1636 aa29.46■■■□□ 2.31
RPS28-202ENST00000449223 ARAP3Q8WWN8 1544 aa29.46■■■□□ 2.31
RPS28-202ENST00000449223 CDC42BPBQ9Y5S2 1711 aa29.45■■■□□ 2.3
RPS28-202ENST00000449223 KCNH8Q96L42 1107 aa29.44■■■□□ 2.3
RPS28-202ENST00000449223 GLI2P10070 1586 aa29.42■■■□□ 2.3
RPS28-202ENST00000449223 PLCH2O75038 1416 aa29.39■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms