RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 PPARGC1BQ86YN6 1023 aaKnown RBP9.22□□□□□ -0.93
VPS50-205ENST00000441602 CTTNBP2Q8WZ74 1663 aa9.22□□□□□ -0.93
VPS50-205ENST00000441602 ADAMTS12P58397 1594 aa9.21□□□□□ -0.93
VPS50-205ENST00000441602 MAGI1Q96QZ7 1491 aaPredicted RBP9.19□□□□□ -0.94
VPS50-205ENST00000441602 FMN1Q68DA7 1419 aa9.18□□□□□ -0.94
VPS50-205ENST00000441602 ZNF608Q9ULD9 1512 aaPredicted RBP9.18□□□□□ -0.94
VPS50-205ENST00000441602 TTBK1Q5TCY1 1321 aaPredicted RBP9.18□□□□□ -0.94
VPS50-205ENST00000441602 EIF4G3O43432 1585 aaKnown RBP9.17□□□□□ -0.94
VPS50-205ENST00000441602 HRCP23327 699 aa9.17□□□□□ -0.94
VPS50-205ENST00000441602 ZEB1P37275 1124 aaPredicted RBP9.17□□□□□ -0.94
VPS50-205ENST00000441602 SNAPC4Q5SXM2 1469 aa9.17□□□□□ -0.94
VPS50-205ENST00000441602 MAP3K1Q13233 1512 aa9.16□□□□□ -0.94
VPS50-205ENST00000441602 CHMP7Q8WUX9 453 aaPredicted RBP9.16□□□□□ -0.94
VPS50-205ENST00000441602 IQGAP2Q13576 1575 aa9.15□□□□□ -0.95
VPS50-205ENST00000441602 SYNJ2O15056 1496 aa9.14□□□□□ -0.95
VPS50-205ENST00000441602 P3H3Q8IVL6 736 aa9.14□□□□□ -0.95
VPS50-205ENST00000441602 FHOD3Q2V2M9 1422 aa9.14□□□□□ -0.95
VPS50-205ENST00000441602 ATP1B4Q9UN42 357 aaPredicted RBP9.14□□□□□ -0.95
VPS50-205ENST00000441602 GRIN2AQ12879 1464 aa9.13□□□□□ -0.95
VPS50-205ENST00000441602 FYCO1Q9BQS8 1478 aa9.13□□□□□ -0.95
VPS50-205ENST00000441602 KIAA0586Q9BVV6 1533 aa9.13□□□□□ -0.95
VPS50-205ENST00000441602 CASKIN1Q8WXD9 1431 aa9.13□□□□□ -0.95
VPS50-205ENST00000441602 SAMD9Q5K651 1589 aa9.12□□□□□ -0.95
VPS50-205ENST00000441602 FBLN2P98095 1184 aa9.11□□□□□ -0.95
VPS50-205ENST00000441602 TIAM1Q13009 1591 aa9.1□□□□□ -0.95
VPS50-205ENST00000441602 UGGT2Q9NYU1 1516 aa9.1□□□□□ -0.95
VPS50-205ENST00000441602 PCF11O94913 1555 aaKnown RBP9.09□□□□□ -0.95
VPS50-205ENST00000441602 CARMIL2Q6F5E8 1435 aa9.08□□□□□ -0.96
VPS50-205ENST00000441602 CFAP43Q8NDM7 1665 aa9.07□□□□□ -0.96
VPS50-205ENST00000441602 CCDC18Q5T9S5 1454 aa9.06□□□□□ -0.96
VPS50-205ENST00000441602 LRRC9Q6ZRR7 1453 aa9.06□□□□□ -0.96
VPS50-205ENST00000441602 KANK4Q5T7N3 995 aaPredicted RBP9.06□□□□□ -0.96
VPS50-205ENST00000441602 NUP160Q12769 1436 aa9.06□□□□□ -0.96
VPS50-205ENST00000441602 MTUS2Q5JR59 1369 aa9.05□□□□□ -0.96
VPS50-205ENST00000441602 HECW1Q76N89 1606 aa9.05□□□□□ -0.96
VPS50-205ENST00000441602 CCER1Q8TC90 406 aaPredicted RBP9.04□□□□□ -0.96
VPS50-205ENST00000441602 HNRNPUL2Q1KMD3 747 aaKnown RBP9.03□□□□□ -0.96
VPS50-205ENST00000441602 CCNB3Q8WWL7 1395 aa9.03□□□□□ -0.96
VPS50-205ENST00000441602 RRBP1Q9P2E9 1410 aaKnown RBP9.03□□□□□ -0.96
VPS50-205ENST00000441602 KIAA0556O60303 1618 aa9.03□□□□□ -0.96
VPS50-205ENST00000441602 CDK11AQ9UQ88 783 aaPredicted RBP9.03□□□□□ -0.96
VPS50-205ENST00000441602 JPH4Q96JJ6 628 aa9.02□□□□□ -0.97
VPS50-205ENST00000441602 CEP170Q5SW79 1584 aa9.02□□□□□ -0.97
VPS50-205ENST00000441602 EHBP1L1Q8N3D4 1523 aa9.01□□□□□ -0.97
VPS50-205ENST00000441602 DISP1Q96F81 1524 aa8.99□□□□□ -0.97
VPS50-205ENST00000441602 EPRSP07814 1512 aaKnown RBP8.97□□□□□ -0.97
VPS50-205ENST00000441602 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.97□□□□□ -0.97
VPS50-205ENST00000441602 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.97□□□□□ -0.97
VPS50-205ENST00000441602 FAM50AQ14320 339 aaKnown RBP8.97□□□□□ -0.97
VPS50-205ENST00000441602 SUPT6HQ7KZ85 1726 aaKnown RBP8.97□□□□□ -0.97
VPS50-205ENST00000441602 RAPGEF6Q8TEU7 1601 aa8.96□□□□□ -0.97
VPS50-205ENST00000441602 PHLDB1Q86UU1 1377 aa8.95□□□□□ -0.98
VPS50-205ENST00000441602 CHD1O14646 1710 aa8.95□□□□□ -0.98
VPS50-205ENST00000441602 PRG4Q92954 1404 aaPredicted RBP8.95□□□□□ -0.98
VPS50-205ENST00000441602 NCOA2Q15596 1464 aa8.94□□□□□ -0.98
VPS50-205ENST00000441602 MYOM3Q5VTT5 1437 aa8.94□□□□□ -0.98
VPS50-205ENST00000441602 PTPRGP23470 1445 aa8.94□□□□□ -0.98
VPS50-205ENST00000441602 FGD6Q6ZV73 1430 aa8.94□□□□□ -0.98
VPS50-205ENST00000441602 ITGAEP38570 1179 aa8.93□□□□□ -0.98
VPS50-205ENST00000441602 CLSPNQ9HAW4 1339 aa8.92□□□□□ -0.98
VPS50-205ENST00000441602 NUP153P49790 1475 aaKnown RBP8.91□□□□□ -0.98
VPS50-205ENST00000441602 CDK13Q14004 1512 aaKnown RBP8.91□□□□□ -0.98
VPS50-205ENST00000441602 MIA2Q96PC5 1412 aa8.91□□□□□ -0.98
VPS50-205ENST00000441602 PLEKHD1A6NEE1 506 aa8.9□□□□□ -0.98
VPS50-205ENST00000441602 TROQ12816 1431 aaPredicted RBP8.9□□□□□ -0.98
VPS50-205ENST00000441602 ACIN1Q9UKV3 1341 aaKnown RBP8.9□□□□□ -0.99
VPS50-205ENST00000441602 ARID3CA6NKF2 412 aa8.89□□□□□ -0.99
VPS50-205ENST00000441602 SETD5Q9C0A6 1442 aa8.89□□□□□ -0.99
VPS50-205ENST00000441602 SHROOM2Q13796 1616 aa8.89□□□□□ -0.99
VPS50-205ENST00000441602 ABCA8O94911 1581 aa8.89□□□□□ -0.99
VPS50-205ENST00000441602 PLB1Q6P1J6 1458 aa8.89□□□□□ -0.99
VPS50-205ENST00000441602 ARHGEF11O15085 1522 aa8.88□□□□□ -0.99
VPS50-205ENST00000441602 LRRIQ1Q96JM4 1722 aa8.88□□□□□ -0.99
VPS50-205ENST00000441602 UACAQ9BZF9 1416 aa8.87□□□□□ -0.99
VPS50-205ENST00000441602 CLASP1Q7Z460 1538 aa8.87□□□□□ -0.99
VPS50-205ENST00000441602 TCOF1Q13428 1488 aaKnown RBP8.86□□□□□ -0.99
VPS50-205ENST00000441602 MAGI3Q5TCQ9 1506 aa8.86□□□□□ -0.99
VPS50-205ENST00000441602 PTPN23Q9H3S7 1636 aa8.86□□□□□ -0.99
VPS50-205ENST00000441602 RAB3GAP2Q9H2M9 1393 aa8.84□□□□□ -0.99
VPS50-205ENST00000441602 ITSN2Q9NZM3 1697 aa8.84□□□□□ -0.99
VPS50-205ENST00000441602 KIF14Q15058 1648 aa8.84□□□□□ -1
VPS50-205ENST00000441602 ATP10BO94823 1461 aa8.83□□□□□ -1
VPS50-205ENST00000441602 CFDP1Q9UEE9 299 aaPredicted RBP8.83□□□□□ -1
VPS50-205ENST00000441602 ADCY10Q96PN6 1610 aa8.83□□□□□ -1
VPS50-205ENST00000441602 DHX57Q6P158 1386 aaKnown RBP8.83□□□□□ -1
VPS50-205ENST00000441602 OSCARQ8IYS5 282 aa8.83□□□□□ -1
VPS50-205ENST00000441602 ABCC2Q92887 1545 aa8.82□□□□□ -1
VPS50-205ENST00000441602 AKNAQ7Z591 1439 aa8.82□□□□□ -1
VPS50-205ENST00000441602 UHRF1BP1LA0JNW5 1464 aa8.81□□□□□ -1
VPS50-205ENST00000441602 HFM1A2PYH4 1435 aa8.81□□□□□ -1
VPS50-205ENST00000441602 ROCK1Q13464 1354 aa8.78□□□□□ -1
VPS50-205ENST00000441602 GPATCH8Q9UKJ3 1502 aaKnown RBP8.78□□□□□ -1
VPS50-205ENST00000441602 ZNF777Q9ULD5 760 aaPredicted RBP8.78□□□□□ -1
VPS50-205ENST00000441602 DAPK1P53355 1430 aa8.77□□□□□ -1.01
VPS50-205ENST00000441602 NPM1P06748 294 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS50-205ENST00000441602 RSPH4AQ5TD94 716 aa8.77□□□□□ -1.01
VPS50-205ENST00000441602 CAMSAP2Q08AD1 1489 aa8.77□□□□□ -1.01
VPS50-205ENST00000441602 DNMT1P26358 1616 aaKnown RBP8.76□□□□□ -1.01
VPS50-205ENST00000441602 ABCC10Q5T3U5 1492 aa8.76□□□□□ -1.01
VPS50-205ENST00000441602 ERCC6L2Q5T890 1561 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms