RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 CEP162Q5TB80 1403 aa36.96■■■■□ 3.51
CPSF4-204ENST00000436336 CEP170Q5SW79 1584 aa36.94■■■■□ 3.5
CPSF4-204ENST00000436336 NUP160Q12769 1436 aa36.92■■■■□ 3.5
CPSF4-204ENST00000436336 IQGAP2Q13576 1575 aa36.88■■■■□ 3.49
CPSF4-204ENST00000436336 KIAA0586Q9BVV6 1533 aa36.86■■■■□ 3.49
CPSF4-204ENST00000436336 CLIP1P30622 1438 aa36.84■■■■□ 3.49
CPSF4-204ENST00000436336 RANGAP1P46060 587 aaPredicted RBP36.76■■■■□ 3.47
CPSF4-204ENST00000436336 EFCAB5A4FU69 1503 aa36.71■■■■□ 3.47
CPSF4-204ENST00000436336 ARHGAP35Q9NRY4 1499 aa36.69■■■■□ 3.46
CPSF4-204ENST00000436336 UGGT2Q9NYU1 1516 aa36.68■■■■□ 3.46
CPSF4-204ENST00000436336 SAMD9Q5K651 1589 aa36.67■■■■□ 3.46
CPSF4-204ENST00000436336 CLASP1Q7Z460 1538 aa36.63■■■■□ 3.45
CPSF4-204ENST00000436336 ARAP1Q96P48 1450 aa36.57■■■■□ 3.44
CPSF4-204ENST00000436336 SHROOM2Q13796 1616 aa36.56■■■■□ 3.44
CPSF4-204ENST00000436336 JPH4Q96JJ6 628 aa36.54■■■■□ 3.44
CPSF4-204ENST00000436336 KIAA0556O60303 1618 aa36.51■■■■□ 3.44
CPSF4-204ENST00000436336 OSCARQ8IYS5 282 aa36.5■■■■□ 3.43
CPSF4-204ENST00000436336 DISP1Q96F81 1524 aa36.5■■■■□ 3.43
CPSF4-204ENST00000436336 FHOD3Q2V2M9 1422 aa36.45■■■■□ 3.43
CPSF4-204ENST00000436336 P3H3Q8IVL6 736 aa36.45■■■■□ 3.43
CPSF4-204ENST00000436336 VPS8Q8N3P4 1428 aa36.45■■■■□ 3.42
CPSF4-204ENST00000436336 CARMIL2Q6F5E8 1435 aa36.43■■■■□ 3.42
CPSF4-204ENST00000436336 PRG4Q92954 1404 aaPredicted RBP36.38■■■■□ 3.41
CPSF4-204ENST00000436336 FMN1Q68DA7 1419 aa36.33■■■■□ 3.41
CPSF4-204ENST00000436336 ERCC6L2Q5T890 1561 aa36.24■■■■□ 3.39
CPSF4-204ENST00000436336 PCF11O94913 1555 aaKnown RBP36.22■■■■□ 3.39
CPSF4-204ENST00000436336 CASKIN1Q8WXD9 1431 aa36.17■■■■□ 3.38
CPSF4-204ENST00000436336 FYCO1Q9BQS8 1478 aa36.16■■■■□ 3.38
CPSF4-204ENST00000436336 RAPGEF6Q8TEU7 1601 aa36.09■■■■□ 3.37
CPSF4-204ENST00000436336 PTPRGP23470 1445 aa36.09■■■■□ 3.37
CPSF4-204ENST00000436336 TTBK1Q5TCY1 1321 aaPredicted RBP36.07■■■■□ 3.37
CPSF4-204ENST00000436336 HECW1Q76N89 1606 aa36.07■■■■□ 3.37
CPSF4-204ENST00000436336 LRRIQ1Q96JM4 1722 aa36.03■■■■□ 3.36
CPSF4-204ENST00000436336 ABCA8O94911 1581 aa36.02■■■■□ 3.36
CPSF4-204ENST00000436336 APLP2Q06481 763 aa36.02■■■■□ 3.36
CPSF4-204ENST00000436336 PLB1Q6P1J6 1458 aa36■■■■□ 3.35
CPSF4-204ENST00000436336 CFAP43Q8NDM7 1665 aa35.99■■■■□ 3.35
CPSF4-204ENST00000436336 MAP3K1Q13233 1512 aa35.99■■■■□ 3.35
CPSF4-204ENST00000436336 ATP1B4Q9UN42 357 aaPredicted RBP35.98■■■■□ 3.35
CPSF4-204ENST00000436336 TIAM1Q13009 1591 aa35.96■■■■□ 3.35
CPSF4-204ENST00000436336 ARHGEF11O15085 1522 aa35.95■■■■□ 3.35
CPSF4-204ENST00000436336 CCDC18Q5T9S5 1454 aa35.92■■■■□ 3.34
CPSF4-204ENST00000436336 NUP153P49790 1475 aaKnown RBP35.91■■■■□ 3.34
CPSF4-204ENST00000436336 UACAQ9BZF9 1416 aa35.9■■■■□ 3.34
CPSF4-204ENST00000436336 EPRSP07814 1512 aaKnown RBP35.89■■■■□ 3.34
CPSF4-204ENST00000436336 RIMBP3CA6NJZ7 1639 aa35.86■■■■□ 3.33
CPSF4-204ENST00000436336 RIMBP3BA6NNM3 1639 aa35.86■■■■□ 3.33
CPSF4-204ENST00000436336 RIMBP3Q9UFD9 1639 aa35.86■■■■□ 3.33
CPSF4-204ENST00000436336 ABCC2Q92887 1545 aa35.84■■■■□ 3.33
CPSF4-204ENST00000436336 UHRF1BP1LA0JNW5 1464 aa35.8■■■■□ 3.32
CPSF4-204ENST00000436336 CDK13Q14004 1512 aaKnown RBP35.8■■■■□ 3.32
CPSF4-204ENST00000436336 PPARGC1BQ86YN6 1023 aaKnown RBP35.77■■■■□ 3.32
CPSF4-204ENST00000436336 LRRC9Q6ZRR7 1453 aa35.75■■■■□ 3.31
CPSF4-204ENST00000436336 KANK4Q5T7N3 995 aaPredicted RBP35.74■■■■□ 3.31
CPSF4-204ENST00000436336 ADCY10Q96PN6 1610 aa35.72■■■■□ 3.31
CPSF4-204ENST00000436336 ATP10BO94823 1461 aa35.7■■■■□ 3.31
CPSF4-204ENST00000436336 ARID3CA6NKF2 412 aa35.7■■■■□ 3.31
CPSF4-204ENST00000436336 EHBP1L1Q8N3D4 1523 aa35.66■■■■□ 3.3
CPSF4-204ENST00000436336 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.64■■■■□ 3.3
CPSF4-204ENST00000436336 HNRNPUL2Q1KMD3 747 aaKnown RBP35.64■■■■□ 3.3
CPSF4-204ENST00000436336 MAGI3Q5TCQ9 1506 aa35.64■■■■□ 3.3
CPSF4-204ENST00000436336 KDM5BQ9UGL1 1544 aa35.64■■■■□ 3.3
CPSF4-204ENST00000436336 ZCCHC11Q5TAX3 1644 aaKnown RBP35.64■■■■□ 3.3
CPSF4-204ENST00000436336 MTUS2Q5JR59 1369 aa35.63■■■■□ 3.29
CPSF4-204ENST00000436336 CDK11AQ9UQ88 783 aaPredicted RBP35.61■■■■□ 3.29
CPSF4-204ENST00000436336 SUPT6HQ7KZ85 1726 aaKnown RBP35.57■■■■□ 3.28
CPSF4-204ENST00000436336 TROQ12816 1431 aaPredicted RBP35.51■■■■□ 3.28
CPSF4-204ENST00000436336 CYB5RLQ6IPT4 315 aa35.51■■■■□ 3.27
CPSF4-204ENST00000436336 PLEKHD1A6NEE1 506 aa35.49■■■■□ 3.27
CPSF4-204ENST00000436336 NCOA2Q15596 1464 aa35.43■■■■□ 3.26
CPSF4-204ENST00000436336 NPM1P06748 294 aaKnown RBP eCLIP35.4■■■■□ 3.26
CPSF4-204ENST00000436336 KIF14Q15058 1648 aa35.4■■■■□ 3.26
CPSF4-204ENST00000436336 TRIM26Q12899 539 aaPredicted RBP35.37■■■■□ 3.25
CPSF4-204ENST00000436336 PHLDB1Q86UU1 1377 aa35.34■■■■□ 3.25
CPSF4-204ENST00000436336 WDR7Q9Y4E6 1490 aa35.31■■■■□ 3.24
CPSF4-204ENST00000436336 ASXL2Q76L83 1435 aa35.28■■■■□ 3.24
CPSF4-204ENST00000436336 DNAJC5Q9H3Z4 198 aa35.27■■■■□ 3.24
CPSF4-204ENST00000436336 MAPKBP1O60336 1514 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 MYOM3Q5VTT5 1437 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 RRBP1Q9P2E9 1410 aaKnown RBP35.25■■■■□ 3.23
CPSF4-204ENST00000436336 ABCC10Q5T3U5 1492 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 ITSN2Q9NZM3 1697 aa35.25■■■■□ 3.23
CPSF4-204ENST00000436336 CDC42BPAQ5VT25 1732 aa35.21■■■■□ 3.23
CPSF4-204ENST00000436336 CCNB3Q8WWL7 1395 aa35.2■■■■□ 3.23
CPSF4-204ENST00000436336 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.2■■■■□ 3.237e-9■■■□□ 17.9
CPSF4-204ENST00000436336 FGD6Q6ZV73 1430 aa35.18■■■■□ 3.22
CPSF4-204ENST00000436336 TTC37Q6PGP7 1564 aa35.17■■■■□ 3.22
CPSF4-204ENST00000436336 KCNH8Q96L42 1107 aa35.17■■■■□ 3.22
CPSF4-204ENST00000436336 GPATCH8Q9UKJ3 1502 aaKnown RBP35.14■■■■□ 3.22
CPSF4-204ENST00000436336 MYO5CQ9NQX4 1742 aa35.14■■■■□ 3.22
CPSF4-204ENST00000436336 MIA2Q96PC5 1412 aa35.14■■■■□ 3.22
CPSF4-204ENST00000436336 ABCA9Q8IUA7 1624 aa35.11■■■■□ 3.21
CPSF4-204ENST00000436336 PREX2Q70Z35 1606 aa35.11■■■■□ 3.21
CPSF4-204ENST00000436336 PTPN23Q9H3S7 1636 aa35.11■■■■□ 3.21
CPSF4-204ENST00000436336 PCGF6Q9BYE7 350 aa35.1■■■■□ 3.21
CPSF4-204ENST00000436336 CDC42BPBQ9Y5S2 1711 aa35.09■■■■□ 3.21
CPSF4-204ENST00000436336 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP35.05■■■■□ 3.2
CPSF4-204ENST00000436336 TCOF1Q13428 1488 aaKnown RBP35.04■■■■□ 3.2
CPSF4-204ENST00000436336 CFDP1Q9UEE9 299 aaPredicted RBP35.01■■■■□ 3.19
CPSF4-204ENST00000436336 FAM50AQ14320 339 aaKnown RBP34.98■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms