RNA–Protein interactions for RNA: ENST00000427635.6

HERC4-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 6,391 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-206ENST00000427635 P3H3Q8IVL6 736 aa7.75□□□□□ -1.17
HERC4-206ENST00000427635 CFAP44Q96MT7 982 aa7.73□□□□□ -1.17
HERC4-206ENST00000427635 HSP90B1P14625 803 aaKnown RBP7.72□□□□□ -1.17
HERC4-206ENST00000427635 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.72□□□□□ -1.17
HERC4-206ENST00000427635 VSIG10Q8N0Z9 540 aa7.71□□□□□ -1.17
HERC4-206ENST00000427635 TAF7LQ5H9L4 462 aa7.71□□□□□ -1.18
HERC4-206ENST00000427635 CHMP4AQ9BY43 222 aa7.7□□□□□ -1.18
HERC4-206ENST00000427635 UPF2Q9HAU5 1272 aaKnown RBP7.7□□□□□ -1.18
HERC4-206ENST00000427635 MYH16Q9H6N6 1097 aa7.7□□□□□ -1.18
HERC4-206ENST00000427635 BRD2P25440 801 aaKnown RBP7.69□□□□□ -1.18
HERC4-206ENST00000427635 CCDC9Q9Y3X0 531 aaKnown RBP7.69□□□□□ -1.18
HERC4-206ENST00000427635 CHMP7Q8WUX9 453 aaPredicted RBP7.69□□□□□ -1.18
HERC4-206ENST00000427635 UBE2Q2Q8WVN8 375 aa7.68□□□□□ -1.18
HERC4-206ENST00000427635 A0A0U1RQG5 324 aaPredicted RBP7.68□□□□□ -1.18
HERC4-206ENST00000427635 SENP3Q9H4L4 574 aaPredicted RBP7.65□□□□□ -1.18
HERC4-206ENST00000427635 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.65□□□□□ -1.18
HERC4-206ENST00000427635 LMOD2Q6P5Q4 547 aa7.65□□□□□ -1.19
HERC4-206ENST00000427635 TSPY4P0CV99 314 aa7.64□□□□□ -1.19
HERC4-206ENST00000427635 TSPY10P0CW01 314 aa7.64□□□□□ -1.19
HERC4-206ENST00000427635 GOLGA2Q08379 1002 aa7.64□□□□□ -1.19
HERC4-206ENST00000427635 WDR43Q15061 677 aaKnown RBP eCLIP7.64□□□□□ -1.19
HERC4-206ENST00000427635 TMX4Q9H1E5 349 aaPredicted RBP7.63□□□□□ -1.19
HERC4-206ENST00000427635 EIF4G2P78344 907 aaKnown RBP eCLIP7.63□□□□□ -1.19
HERC4-206ENST00000427635 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.63□□□□□ -1.19
HERC4-206ENST00000427635 ANP32AP39687 249 aaKnown RBP7.62□□□□□ -1.19
HERC4-206ENST00000427635 DCAF8L1A6NGE4 600 aa7.62□□□□□ -1.19
HERC4-206ENST00000427635 HRCP23327 699 aa7.62□□□□□ -1.19
HERC4-206ENST00000427635 DHX37Q8IY37 1157 aaKnown RBP7.62□□□□□ -1.19
HERC4-206ENST00000427635 DIEXFQ68CQ4 756 aaKnown RBP7.6□□□□□ -1.19
HERC4-206ENST00000427635 KRI1Q8N9T8 703 aaKnown RBP7.6□□□□□ -1.19
HERC4-206ENST00000427635 CLSTN1O94985 981 aa7.6□□□□□ -1.19
HERC4-206ENST00000427635 KCNH8Q96L42 1107 aa7.6□□□□□ -1.19
HERC4-206ENST00000427635 LOC105371045A0A1W2PR82 267 aa7.6□□□□□ -1.19
HERC4-206ENST00000427635 PAXIP1Q6ZW49 1069 aaPredicted RBP7.59□□□□□ -1.19
HERC4-206ENST00000427635 ZRSR1Q15695 479 aaKnown RBP7.58□□□□□ -1.2
HERC4-206ENST00000427635 HDGFP51858 240 aaKnown RBP7.58□□□□□ -1.2
HERC4-206ENST00000427635 ERCC6Q03468 1493 aa7.58□□□□□ -1.2
HERC4-206ENST00000427635 NCLP19338 710 aaKnown RBP7.57□□□□□ -1.2
HERC4-206ENST00000427635 CCDC136Q96JN2 1154 aa7.57□□□□□ -1.2
HERC4-206ENST00000427635 NAP1L5Q96NT1 182 aaPredicted RBP7.57□□□□□ -1.2
HERC4-206ENST00000427635 TONSLQ96HA7 1378 aa7.57□□□□□ -1.2
HERC4-206ENST00000427635 ZNF526Q8TF50 670 aaPredicted RBP7.56□□□□□ -1.2
HERC4-206ENST00000427635 USP35Q9P2H5 1018 aa7.55□□□□□ -1.2
HERC4-206ENST00000427635 TMC1Q8TDI8 760 aa7.55□□□□□ -1.2
HERC4-206ENST00000427635 CASC1Q6TDU7 716 aa7.54□□□□□ -1.2
HERC4-206ENST00000427635 ISY1Q9ULR0 285 aaKnown RBP7.54□□□□□ -1.2
HERC4-206ENST00000427635 KDM2AQ9Y2K7 1162 aa7.54□□□□□ -1.2
HERC4-206ENST00000427635 CFAP53Q96M91 514 aa7.54□□□□□ -1.2
HERC4-206ENST00000427635 PTMSP20962 102 aa7.53□□□□□ -1.2
HERC4-206ENST00000427635 PRM3Q9NNZ6 103 aa7.52□□□□□ -1.21
HERC4-206ENST00000427635 POGKQ9P215 609 aa7.52□□□□□ -1.21
HERC4-206ENST00000427635 PLEKHD1A6NEE1 506 aa7.52□□□□□ -1.21
HERC4-206ENST00000427635 G3V3G9 751 aa7.51□□□□□ -1.21
HERC4-206ENST00000427635 DCAF8Q5TAQ9 597 aa7.51□□□□□ -1.21
HERC4-206ENST00000427635 PPM1GO15355 546 aaPredicted RBP7.5□□□□□ -1.21
HERC4-206ENST00000427635 CHIC2Q9UKJ5 165 aa7.5□□□□□ -1.21
HERC4-206ENST00000427635 SALL2Q9Y467 1007 aaPredicted RBP7.5□□□□□ -1.21
HERC4-206ENST00000427635 OS9Q13438 667 aaPredicted RBP7.49□□□□□ -1.21
HERC4-206ENST00000427635 CDCA8Q53HL2 280 aa7.48□□□□□ -1.21
HERC4-206ENST00000427635 CNKSR2Q8WXI2 1034 aa7.48□□□□□ -1.21
HERC4-206ENST00000427635 BCL11BQ9C0K0 894 aaPredicted RBP7.48□□□□□ -1.21
HERC4-206ENST00000427635 MLECQ14165 292 aa7.47□□□□□ -1.21
HERC4-206ENST00000427635 MEX3CQ5U5Q3 659 aaKnown RBP7.47□□□□□ -1.21
HERC4-206ENST00000427635 MTUS2Q5JR59 1369 aa7.47□□□□□ -1.21
HERC4-206ENST00000427635 FOXD1Q16676 465 aa7.47□□□□□ -1.21
HERC4-206ENST00000427635 TRIM44Q96DX7 344 aaPredicted RBP7.47□□□□□ -1.21
HERC4-206ENST00000427635 ANP32EQ9BTT0 268 aa7.46□□□□□ -1.21
HERC4-206ENST00000427635 PNNQ9H307 717 aaKnown RBP7.46□□□□□ -1.21
HERC4-206ENST00000427635 SCRIBQ14160 1630 aa7.46□□□□□ -1.21
HERC4-206ENST00000427635 FAM9BQ8IZU0 186 aa7.46□□□□□ -1.22
HERC4-206ENST00000427635 MAPK8IP3Q9UPT6 1336 aa7.46□□□□□ -1.22
HERC4-206ENST00000427635 FGD1P98174 961 aa7.46□□□□□ -1.22
HERC4-206ENST00000427635 LAS1LQ9Y4W2 734 aaKnown RBP7.45□□□□□ -1.22
HERC4-206ENST00000427635 ACIN1Q9UKV3 1341 aaKnown RBP7.45□□□□□ -1.22
HERC4-206ENST00000427635 CSB-PGBD3P0DP91 1061 aa7.45□□□□□ -1.22
HERC4-206ENST00000427635 NUDCQ9Y266 331 aa7.45□□□□□ -1.22
HERC4-206ENST00000427635 GOLGA6L6A8MZA4 724 aa7.45□□□□□ -1.22
HERC4-206ENST00000427635 KANK1Q14678 1352 aa7.45□□□□□ -1.22
HERC4-206ENST00000427635 NAP1L2Q9ULW6 460 aaPredicted RBP7.44□□□□□ -1.22
HERC4-206ENST00000427635 PSMD1Q99460 953 aa7.44□□□□□ -1.22
HERC4-206ENST00000427635 RBM25P49756 843 aaKnown RBP7.44□□□□□ -1.22
HERC4-206ENST00000427635 SAMD1Q6SPF0 538 aaPredicted RBP7.44□□□□□ -1.22
HERC4-206ENST00000427635 GOLGA6L22H0YM25 854 aa7.43□□□□□ -1.22
HERC4-206ENST00000427635 CHMP4BQ9H444 224 aaKnown RBP7.42□□□□□ -1.22
HERC4-206ENST00000427635 KCNJ4P48050 445 aa7.42□□□□□ -1.22
HERC4-206ENST00000427635 FTSJ3Q8IY81 847 aaKnown RBP7.42□□□□□ -1.22
HERC4-206ENST00000427635 RSF1Q96T23 1441 aaPredicted RBP7.41□□□□□ -1.22
HERC4-206ENST00000427635 IRX6P78412 446 aaPredicted RBP7.41□□□□□ -1.22
HERC4-206ENST00000427635 BCCIPQ9P287 314 aaKnown RBP eCLIP7.41□□□□□ -1.22
HERC4-206ENST00000427635 BECN1Q14457 450 aa7.4□□□□□ -1.22
HERC4-206ENST00000427635 L1TD1Q5T7N2 865 aaKnown RBP7.4□□□□□ -1.23
HERC4-206ENST00000427635 KNSTRNQ9Y448 316 aa7.4□□□□□ -1.23
HERC4-206ENST00000427635 HNRNPUQ00839 825 aaKnown RBP eCLIP7.4□□□□□ -1.23
HERC4-206ENST00000427635 PAK3O75914 559 aaPredicted RBP7.39□□□□□ -1.23
HERC4-206ENST00000427635 KIAA2012Q0VF49 1180 aa7.39□□□□□ -1.23
HERC4-206ENST00000427635 RGL3Q3MIN7 710 aa7.39□□□□□ -1.23
HERC4-206ENST00000427635 MSH5O43196 834 aa7.39□□□□□ -1.23
HERC4-206ENST00000427635 ADRA2BP18089 450 aa7.39□□□□□ -1.23
HERC4-206ENST00000427635 CWC22Q9HCG8 908 aaKnown RBP7.39□□□□□ -1.23
HERC4-206ENST00000427635 RTF1Q92541 710 aaKnown RBP7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms