RNA–Protein interactions for RNA: ENST00000427110.6

PTPRC-208, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best)

Gene PTPRC, Length 264 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-208ENST00000427110 CCDC61Q9Y6R9 512 aa7.17□□□□□ -1.26
PTPRC-208ENST00000427110 GALR2O43603 387 aaPredicted RBP7.16□□□□□ -1.26
PTPRC-208ENST00000427110 DCAF8Q5TAQ9 597 aa7.15□□□□□ -1.26
PTPRC-208ENST00000427110 FAM212AQ96EL1 285 aa7.14□□□□□ -1.27
PTPRC-208ENST00000427110 SPOCK2Q92563 424 aa7.13□□□□□ -1.27
PTPRC-208ENST00000427110 MS4A3Q96HJ5 214 aa7.13□□□□□ -1.27
PTPRC-208ENST00000427110 MAP3K13O43283 966 aa7.11□□□□□ -1.27
PTPRC-208ENST00000427110 KIF12Q96FN5 646 aa7.11□□□□□ -1.27
PTPRC-208ENST00000427110 PYGBP11216 843 aa7.1□□□□□ -1.27
PTPRC-208ENST00000427110 POTEIP0CG38 1075 aa7.09□□□□□ -1.27
PTPRC-208ENST00000427110 CIZ1Q9ULV3 898 aaPredicted RBP7.09□□□□□ -1.27
PTPRC-208ENST00000427110 TRPC6Q9Y210 931 aa7.09□□□□□ -1.27
PTPRC-208ENST00000427110 DCBLD2Q96PD2 775 aa7.06□□□□□ -1.28
PTPRC-208ENST00000427110 PCDHB13Q9Y5F0 798 aa7.06□□□□□ -1.28
PTPRC-208ENST00000427110 GSE1Q14687 1217 aa7.05□□□□□ -1.28
PTPRC-208ENST00000427110 CLCN6P51797 869 aa7.04□□□□□ -1.28
PTPRC-208ENST00000427110 IFNL1Q8IU54 200 aa7.04□□□□□ -1.28
PTPRC-208ENST00000427110 PCDHB8Q9UN66 801 aa7.03□□□□□ -1.28
PTPRC-208ENST00000427110 PELP1Q8IZL8 1130 aaKnown RBP7.01□□□□□ -1.29
PTPRC-208ENST00000427110 BMP2KQ9NSY1 1161 aaPredicted RBP7□□□□□ -1.29
PTPRC-208ENST00000427110 ATMINO43313 823 aaPredicted RBP6.99□□□□□ -1.29
PTPRC-208ENST00000427110 ATN1P54259 1190 aaPredicted RBP6.98□□□□□ -1.29
PTPRC-208ENST00000427110 ASTLQ6HA08 431 aaPredicted RBP6.97□□□□□ -1.29
PTPRC-208ENST00000427110 TTLL13PA6NNM8 815 aa6.96□□□□□ -1.3
PTPRC-208ENST00000427110 SGIP1Q9BQI5 828 aa6.96□□□□□ -1.3
PTPRC-208ENST00000427110 CHRM1P11229 460 aaPredicted RBP6.95□□□□□ -1.3
PTPRC-208ENST00000427110 TIE1P35590 1138 aa6.95□□□□□ -1.3
PTPRC-208ENST00000427110 TMEM106CQ9BVX2 250 aa6.95□□□□□ -1.3
PTPRC-208ENST00000427110 PKD2Q13563 968 aa6.93□□□□□ -1.3
PTPRC-208ENST00000427110 ZNF467Q7Z7K2 595 aaPredicted RBP6.93□□□□□ -1.3
PTPRC-208ENST00000427110 RNF25Q96BH1 459 aaPredicted RBP6.93□□□□□ -1.3
PTPRC-208ENST00000427110 TRIM35Q9UPQ4 493 aa6.92□□□□□ -1.3
PTPRC-208ENST00000427110 ECM2O94769 699 aaPredicted RBP6.91□□□□□ -1.3
PTPRC-208ENST00000427110 METRNQ9UJH8 293 aa6.91□□□□□ -1.3
PTPRC-208ENST00000427110 PSEN1P49768 467 aa6.9□□□□□ -1.3
PTPRC-208ENST00000427110 TRIM41Q8WV44 630 aa6.9□□□□□ -1.3
PTPRC-208ENST00000427110 POTEB2H3BUK9 544 aa6.88□□□□□ -1.31
PTPRC-208ENST00000427110 RGL2O15211 777 aa6.88□□□□□ -1.31
PTPRC-208ENST00000427110 LHX8Q68G74 356 aa6.88□□□□□ -1.31
PTPRC-208ENST00000427110 SLC39A7Q92504 469 aa6.88□□□□□ -1.31
PTPRC-208ENST00000427110 POTEFA5A3E0 1075 aa6.87□□□□□ -1.31
PTPRC-208ENST00000427110 RIOK3O14730 519 aaKnown RBP6.87□□□□□ -1.31
PTPRC-208ENST00000427110 PDAP1Q13442 181 aaKnown RBP6.87□□□□□ -1.31
PTPRC-208ENST00000427110 COLQQ9Y215 455 aaPredicted RBP6.87□□□□□ -1.31
PTPRC-208ENST00000427110 C7P10643 843 aa6.86□□□□□ -1.31
PTPRC-208ENST00000427110 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.84□□□□□ -1.31
PTPRC-208ENST00000427110 ZFP91Q96JP5 570 aaPredicted RBP6.84□□□□□ -1.31
PTPRC-208ENST00000427110 CABP2Q9NPB3 220 aa6.84□□□□□ -1.31
PTPRC-208ENST00000427110 SEC24BO95487 1268 aa6.83□□□□□ -1.32
PTPRC-208ENST00000427110 POTEJP0CG39 1038 aa6.83□□□□□ -1.32
PTPRC-208ENST00000427110 GOLGA2Q08379 1002 aa6.82□□□□□ -1.32
PTPRC-208ENST00000427110 VGFO15240 615 aaPredicted RBP6.81□□□□□ -1.32
PTPRC-208ENST00000427110 IRX5P78411 483 aaPredicted RBP6.8□□□□□ -1.32
PTPRC-208ENST00000427110 IER5LQ5T953 404 aa6.8□□□□□ -1.32
PTPRC-208ENST00000427110 PLCG2P16885 1265 aa6.79□□□□□ -1.32
PTPRC-208ENST00000427110 MKRN3Q13064 507 aaKnown RBP6.79□□□□□ -1.32
PTPRC-208ENST00000427110 EFCAB3Q8N7B9 438 aa6.79□□□□□ -1.32
PTPRC-208ENST00000427110 BCL11BQ9C0K0 894 aaPredicted RBP6.78□□□□□ -1.32
PTPRC-208ENST00000427110 STK25O00506 426 aa6.77□□□□□ -1.33
PTPRC-208ENST00000427110 PDCD7Q8N8D1 485 aaKnown RBP6.77□□□□□ -1.33
PTPRC-208ENST00000427110 OTUD5Q96G74 571 aa6.77□□□□□ -1.33
PTPRC-208ENST00000427110 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.77□□□□□ -1.33
PTPRC-208ENST00000427110 STK24Q9Y6E0 443 aa6.77□□□□□ -1.33
PTPRC-208ENST00000427110 DPY19L2Q6NUT2 758 aa6.76□□□□□ -1.33
PTPRC-208ENST00000427110 OCEL1Q9H607 264 aa6.76□□□□□ -1.33
PTPRC-208ENST00000427110 DCAF8L2P0C7V8 631 aa6.74□□□□□ -1.33
PTPRC-208ENST00000427110 RTN4Q9NQC3 1192 aaKnown RBP6.74□□□□□ -1.33
PTPRC-208ENST00000427110 TAOK2Q9UL54 1235 aa6.72□□□□□ -1.33
PTPRC-208ENST00000427110 PHF8Q9UPP1 1060 aa6.72□□□□□ -1.33
PTPRC-208ENST00000427110 CHGAP10645 457 aaKnown RBP6.71□□□□□ -1.34
PTPRC-208ENST00000427110 ILDR1Q86SU0 546 aaPredicted RBP6.7□□□□□ -1.34
PTPRC-208ENST00000427110 MS4A4AQ96JQ5 239 aa6.7□□□□□ -1.34
PTPRC-208ENST00000427110 SCUBE2Q9NQ36 999 aa6.7□□□□□ -1.34
PTPRC-208ENST00000427110 MFRPQ9BY79 579 aa6.68□□□□□ -1.34
PTPRC-208ENST00000427110 SOX12O15370 315 aa6.67□□□□□ -1.34
PTPRC-208ENST00000427110 AMER1Q5JTC6 1135 aaPredicted RBP6.67□□□□□ -1.34
PTPRC-208ENST00000427110 MAMSTRQ6ZN01 415 aa6.67□□□□□ -1.34
PTPRC-208ENST00000427110 HS6ST3Q8IZP7 471 aa6.67□□□□□ -1.34
PTPRC-208ENST00000427110 FBXO22Q8NEZ5 403 aa6.66□□□□□ -1.34
PTPRC-208ENST00000427110 SLAIN1Q8ND83 568 aa6.65□□□□□ -1.34
PTPRC-208ENST00000427110 NLRP6P59044 892 aa6.64□□□□□ -1.35
PTPRC-208ENST00000427110 NKX1-1Q15270 411 aaPredicted RBP6.64□□□□□ -1.35
PTPRC-208ENST00000427110 C3orf67Q6ZVT6 689 aa6.64□□□□□ -1.35
PTPRC-208ENST00000427110 L3MBTL3Q96JM7 780 aaPredicted RBP6.64□□□□□ -1.35
PTPRC-208ENST00000427110 BOLA1Q9Y3E2 137 aa6.64□□□□□ -1.35
PTPRC-208ENST00000427110 MICALL2Q8IY33 904 aa6.62□□□□□ -1.35
PTPRC-208ENST00000427110 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.62□□□□□ -1.35
PTPRC-208ENST00000427110 G3V3G9 751 aa6.61□□□□□ -1.35
PTPRC-208ENST00000427110 PPP1R37O75864 691 aa6.61□□□□□ -1.35
PTPRC-208ENST00000427110 TMEM92Q6UXU6 159 aa6.58□□□□□ -1.36
PTPRC-208ENST00000427110 FAM163AQ96GL9 167 aaPredicted RBP6.58□□□□□ -1.36
PTPRC-208ENST00000427110 TMEM121BQ9BXQ6 578 aaPredicted RBP6.58□□□□□ -1.36
PTPRC-208ENST00000427110 LCE2DQ5TA82 110 aaPredicted RBP6.56□□□□□ -1.36
PTPRC-208ENST00000427110 DNAJC5Q9H3Z4 198 aa6.55□□□□□ -1.36
PTPRC-208ENST00000427110 GTPBP6O43824 516 aaPredicted RBP6.53□□□□□ -1.36
PTPRC-208ENST00000427110 ST18O60284 1047 aa6.5□□□□□ -1.37
PTPRC-208ENST00000427110 C2orf72A6NCS6 295 aa6.49□□□□□ -1.37
PTPRC-208ENST00000427110 HOXB3P14651 431 aaPredicted RBP6.48□□□□□ -1.37
PTPRC-208ENST00000427110 BBXQ8WY36 941 aaPredicted RBP6.48□□□□□ -1.37
PTPRC-208ENST00000427110 POTEMA6NI47 508 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms