RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 NESP48681 1621 aa12.81□□□□□ -0.36
HMGN1-205ENST00000419378 SPDYE1Q8NFV5 336 aaPredicted RBP12.8□□□□□ -0.36
HMGN1-205ENST00000419378 PKD2Q13563 968 aa12.79□□□□□ -0.36
HMGN1-205ENST00000419378 ERCC6Q03468 1493 aa12.78□□□□□ -0.36
HMGN1-205ENST00000419378 TOP2AP11388 1531 aaKnown RBP12.78□□□□□ -0.36
HMGN1-205ENST00000419378 LAMC3Q9Y6N6 1575 aa12.77□□□□□ -0.36
HMGN1-205ENST00000419378 REM2Q8IYK8 340 aaPredicted RBP12.77□□□□□ -0.37
HMGN1-205ENST00000419378 PLEKHG5O94827 1062 aa12.76□□□□□ -0.37
HMGN1-205ENST00000419378 CLEC11AQ9Y240 323 aa12.75□□□□□ -0.37
HMGN1-205ENST00000419378 SLC24A1O60721 1099 aa12.73□□□□□ -0.37
HMGN1-205ENST00000419378 CADPSQ9ULU8 1353 aa12.7□□□□□ -0.38
HMGN1-205ENST00000419378 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
HMGN1-205ENST00000419378 CUX2O14529 1486 aa12.68□□□□□ -0.38
HMGN1-205ENST00000419378 KIF21AQ7Z4S6 1674 aa12.67□□□□□ -0.38
HMGN1-205ENST00000419378 PRR29P0C7W0 189 aa12.67□□□□□ -0.38
HMGN1-205ENST00000419378 PDS5BQ9NTI5 1447 aa12.67□□□□□ -0.38
HMGN1-205ENST00000419378 THOC2Q8NI27 1593 aaKnown RBP12.66□□□□□ -0.38
HMGN1-205ENST00000419378 POTEHQ6S545 545 aa12.65□□□□□ -0.38
HMGN1-205ENST00000419378 ECM2O94769 699 aaPredicted RBP12.63□□□□□ -0.39
HMGN1-205ENST00000419378 CFTRP13569 1480 aa12.63□□□□□ -0.39
HMGN1-205ENST00000419378 PITPNM1O00562 1244 aa12.62□□□□□ -0.39
HMGN1-205ENST00000419378 CREBZFQ9NS37 354 aa12.61□□□□□ -0.39
HMGN1-205ENST00000419378 CCDC88BA6NC98 1476 aa12.6□□□□□ -0.39
HMGN1-205ENST00000419378 CIZ1Q9ULV3 898 aaPredicted RBP12.6□□□□□ -0.39
HMGN1-205ENST00000419378 FANCD2Q9BXW9 1451 aa12.58□□□□□ -0.4
HMGN1-205ENST00000419378 MRC2Q9UBG0 1479 aa12.57□□□□□ -0.4
HMGN1-205ENST00000419378 CEP164Q9UPV0 1460 aa12.57□□□□□ -0.4
HMGN1-205ENST00000419378 PRDM2Q13029 1718 aa12.54□□□□□ -0.4
HMGN1-205ENST00000419378 WDR62O43379 1518 aa12.54□□□□□ -0.4
HMGN1-205ENST00000419378 MNX1P50219 401 aaPredicted RBP12.52□□□□□ -0.41
HMGN1-205ENST00000419378 NUBP1P53384 320 aa12.52□□□□□ -0.41
HMGN1-205ENST00000419378 RGL2O15211 777 aa12.51□□□□□ -0.41
HMGN1-205ENST00000419378 URB2Q14146 1524 aaKnown RBP12.47□□□□□ -0.41
HMGN1-205ENST00000419378 GSE1Q14687 1217 aa12.46□□□□□ -0.41
HMGN1-205ENST00000419378 SUPT5HO00267 1087 aaKnown RBP12.45□□□□□ -0.42
HMGN1-205ENST00000419378 DCAF8Q5TAQ9 597 aa12.44□□□□□ -0.42
HMGN1-205ENST00000419378 TRIM41Q8WV44 630 aa12.43□□□□□ -0.42
HMGN1-205ENST00000419378 PLCB2Q00722 1185 aa12.42□□□□□ -0.42
HMGN1-205ENST00000419378 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
HMGN1-205ENST00000419378 FAM212AQ96EL1 285 aa12.4□□□□□ -0.42
HMGN1-205ENST00000419378 NPM1P06748 294 aaKnown RBP eCLIP12.39□□□□□ -0.43
HMGN1-205ENST00000419378 RASEFQ8IZ41 740 aa12.39□□□□□ -0.43
HMGN1-205ENST00000419378 TOPBP1Q92547 1522 aa12.37□□□□□ -0.43
HMGN1-205ENST00000419378 DNMBPQ6XZF7 1577 aa12.35□□□□□ -0.43
HMGN1-205ENST00000419378 ABCC8Q09428 1581 aa12.35□□□□□ -0.43
HMGN1-205ENST00000419378 DNAJC5Q9H3Z4 198 aa12.34□□□□□ -0.43
HMGN1-205ENST00000419378 BBXQ8WY36 941 aaPredicted RBP12.33□□□□□ -0.44
HMGN1-205ENST00000419378 RNF25Q96BH1 459 aaPredicted RBP12.33□□□□□ -0.44
HMGN1-205ENST00000419378 CHGAP10645 457 aaKnown RBP12.31□□□□□ -0.44
HMGN1-205ENST00000419378 PRKAR2AP13861 404 aaKnown RBP12.31□□□□□ -0.44
HMGN1-205ENST00000419378 FARP1Q9Y4F1 1045 aaPredicted RBP12.31□□□□□ -0.44
HMGN1-205ENST00000419378 IFT140Q96RY7 1462 aa12.31□□□□□ -0.44
HMGN1-205ENST00000419378 FXR2P51116 673 aaKnown RBP eCLIP12.3□□□□□ -0.44
HMGN1-205ENST00000419378 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.29□□□□□ -0.44
HMGN1-205ENST00000419378 HAP1P54257 671 aaPredicted RBP12.27□□□□□ -0.45
HMGN1-205ENST00000419378 CHRDL2Q6WN34 429 aa12.27□□□□□ -0.45
HMGN1-205ENST00000419378 ZNF608Q9ULD9 1512 aaPredicted RBP12.27□□□□□ -0.45
HMGN1-205ENST00000419378 POLA1P09884 1462 aaPredicted RBP12.26□□□□□ -0.45
HMGN1-205ENST00000419378 CUX1P39880 1505 aa12.26□□□□□ -0.45
HMGN1-205ENST00000419378 RIOK3O14730 519 aaKnown RBP12.25□□□□□ -0.45
HMGN1-205ENST00000419378 CHRM1P11229 460 aaPredicted RBP12.25□□□□□ -0.45
HMGN1-205ENST00000419378 TARBP1Q13395 1621 aaKnown RBP12.25□□□□□ -0.45
HMGN1-205ENST00000419378 PYGBP11216 843 aa12.24□□□□□ -0.45
HMGN1-205ENST00000419378 TSPYL2Q9H2G4 693 aaPredicted RBP12.24□□□□□ -0.45
HMGN1-205ENST00000419378 EIF4G3O43432 1585 aaKnown RBP12.23□□□□□ -0.45
HMGN1-205ENST00000419378 PAXIP1Q6ZW49 1069 aaPredicted RBP12.23□□□□□ -0.45
HMGN1-205ENST00000419378 FGD5Q6ZNL6 1462 aa12.22□□□□□ -0.45
HMGN1-205ENST00000419378 HS6ST3Q8IZP7 471 aa12.21□□□□□ -0.45
HMGN1-205ENST00000419378 PIP4P2Q8N4L2 257 aa12.21□□□□□ -0.45
HMGN1-205ENST00000419378 CFAP44Q96MT7 982 aa12.21□□□□□ -0.45
HMGN1-205ENST00000419378 RAD54L2Q9Y4B4 1467 aa12.2□□□□□ -0.46
HMGN1-205ENST00000419378 TAOK2Q9UL54 1235 aa12.18□□□□□ -0.46
HMGN1-205ENST00000419378 SOGA1O94964 1423 aa12.18□□□□□ -0.46
HMGN1-205ENST00000419378 AQRO60306 1485 aaKnown RBP eCLIP12.16□□□□□ -0.462e-11■■■■■ 27.4
HMGN1-205ENST00000419378 VGFO15240 615 aaPredicted RBP12.16□□□□□ -0.46
HMGN1-205ENST00000419378 SPRYD3Q8NCJ5 442 aa12.15□□□□□ -0.46
HMGN1-205ENST00000419378 WDR97A6NE52 1622 aa12.15□□□□□ -0.47
HMGN1-205ENST00000419378 SYNJ1O43426 1573 aa12.13□□□□□ -0.47
HMGN1-205ENST00000419378 WRNQ14191 1432 aaPredicted RBP eCLIP12.13□□□□□ -0.47
HMGN1-205ENST00000419378 BIVM-ERCC5R4GMW8 1640 aa12.13□□□□□ -0.47
HMGN1-205ENST00000419378 TDRD9Q8NDG6 1382 aaKnown RBP12.13□□□□□ -0.47
HMGN1-205ENST00000419378 TOP2BQ02880 1626 aa12.12□□□□□ -0.47
HMGN1-205ENST00000419378 STK25O00506 426 aa12.12□□□□□ -0.47
HMGN1-205ENST00000419378 CCDC61Q9Y6R9 512 aa12.1□□□□□ -0.47
HMGN1-205ENST00000419378 ABCA10Q8WWZ4 1543 aa12.1□□□□□ -0.47
HMGN1-205ENST00000419378 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.09□□□□□ -0.47
HMGN1-205ENST00000419378 ZFP91Q96JP5 570 aaPredicted RBP12.09□□□□□ -0.47
HMGN1-205ENST00000419378 SGIP1Q9BQI5 828 aa12.08□□□□□ -0.48
HMGN1-205ENST00000419378 CHD1O14646 1710 aa12.08□□□□□ -0.48
HMGN1-205ENST00000419378 SNAPC4Q5SXM2 1469 aa12.08□□□□□ -0.48
HMGN1-205ENST00000419378 ABCA5Q8WWZ7 1642 aa12.08□□□□□ -0.48
HMGN1-205ENST00000419378 PAK3O75914 559 aaPredicted RBP12.07□□□□□ -0.48
HMGN1-205ENST00000419378 GRIN2BQ13224 1484 aa12.07□□□□□ -0.48
HMGN1-205ENST00000419378 NKX1-1Q15270 411 aaPredicted RBP12.06□□□□□ -0.48
HMGN1-205ENST00000419378 BCL11BQ9C0K0 894 aaPredicted RBP12.06□□□□□ -0.48
HMGN1-205ENST00000419378 PBRM1Q86U86 1689 aa12.06□□□□□ -0.48
HMGN1-205ENST00000419378 ZNF467Q7Z7K2 595 aaPredicted RBP12.05□□□□□ -0.48
HMGN1-205ENST00000419378 VSIG10Q8N0Z9 540 aa12.05□□□□□ -0.48
HMGN1-205ENST00000419378 STK24Q9Y6E0 443 aa12.05□□□□□ -0.48
HMGN1-205ENST00000419378 GAPVD1Q14C86 1478 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms