RNA–Protein interactions for RNA: ENST00000417664.6

SSBP3-205, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 1,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-205ENST00000417664 EFCAB5A4FU69 1503 aa25.95■■□□□ 1.75
SSBP3-205ENST00000417664 ZNF608Q9ULD9 1512 aaPredicted RBP25.95■■□□□ 1.74
SSBP3-205ENST00000417664 ADAMTS12P58397 1594 aa25.94■■□□□ 1.74
SSBP3-205ENST00000417664 EIF4G3O43432 1585 aaKnown RBP25.89■■□□□ 1.73
SSBP3-205ENST00000417664 HRCP23327 699 aa25.83■■□□□ 1.73
SSBP3-205ENST00000417664 MAGI1Q96QZ7 1491 aaPredicted RBP25.82■■□□□ 1.72
SSBP3-205ENST00000417664 MAP3K1Q13233 1512 aa25.8■■□□□ 1.72
SSBP3-205ENST00000417664 SNAPC4Q5SXM2 1469 aa25.79■■□□□ 1.72
SSBP3-205ENST00000417664 SAMD9Q5K651 1589 aa25.77■■□□□ 1.72
SSBP3-205ENST00000417664 TTBK1Q5TCY1 1321 aaPredicted RBP25.73■■□□□ 1.71
SSBP3-205ENST00000417664 FMN1Q68DA7 1419 aa25.73■■□□□ 1.71
SSBP3-205ENST00000417664 IQGAP2Q13576 1575 aa25.73■■□□□ 1.71
SSBP3-205ENST00000417664 FHOD3Q2V2M9 1422 aa25.71■■□□□ 1.71
SSBP3-205ENST00000417664 GRIN2AQ12879 1464 aa25.71■■□□□ 1.71
SSBP3-205ENST00000417664 SYNJ2O15056 1496 aa25.69■■□□□ 1.7
SSBP3-205ENST00000417664 FYCO1Q9BQS8 1478 aa25.69■■□□□ 1.7
SSBP3-205ENST00000417664 CASKIN1Q8WXD9 1431 aa25.68■■□□□ 1.7
SSBP3-205ENST00000417664 KIAA0586Q9BVV6 1533 aa25.67■■□□□ 1.7
SSBP3-205ENST00000417664 P3H3Q8IVL6 736 aa25.66■■□□□ 1.7
SSBP3-205ENST00000417664 TIAM1Q13009 1591 aa25.66■■□□□ 1.7
SSBP3-205ENST00000417664 PCF11O94913 1555 aaKnown RBP25.64■■□□□ 1.7
SSBP3-205ENST00000417664 UGGT2Q9NYU1 1516 aa25.63■■□□□ 1.69
SSBP3-205ENST00000417664 KANK4Q5T7N3 995 aaPredicted RBP25.61■■□□□ 1.69
SSBP3-205ENST00000417664 CHMP7Q8WUX9 453 aaPredicted RBP25.61■■□□□ 1.69
SSBP3-205ENST00000417664 CFAP43Q8NDM7 1665 aa25.59■■□□□ 1.69
SSBP3-205ENST00000417664 LRRC9Q6ZRR7 1453 aa25.55■■□□□ 1.68
SSBP3-205ENST00000417664 ZEB1P37275 1124 aaPredicted RBP25.55■■□□□ 1.68
SSBP3-205ENST00000417664 NUP160Q12769 1436 aa25.53■■□□□ 1.68
SSBP3-205ENST00000417664 RRBP1Q9P2E9 1410 aaKnown RBP25.49■■□□□ 1.67
SSBP3-205ENST00000417664 CEP170Q5SW79 1584 aa25.49■■□□□ 1.67
SSBP3-205ENST00000417664 ATP1B4Q9UN42 357 aaPredicted RBP25.45■■□□□ 1.66
SSBP3-205ENST00000417664 KIAA0556O60303 1618 aa25.44■■□□□ 1.66
SSBP3-205ENST00000417664 FBLN2P98095 1184 aa25.44■■□□□ 1.66
SSBP3-205ENST00000417664 DISP1Q96F81 1524 aa25.44■■□□□ 1.66
SSBP3-205ENST00000417664 CCDC18Q5T9S5 1454 aa25.41■■□□□ 1.66
SSBP3-205ENST00000417664 HECW1Q76N89 1606 aa25.39■■□□□ 1.66
SSBP3-205ENST00000417664 CCNB3Q8WWL7 1395 aa25.38■■□□□ 1.65
SSBP3-205ENST00000417664 CARMIL2Q6F5E8 1435 aa25.36■■□□□ 1.65
SSBP3-205ENST00000417664 JPH4Q96JJ6 628 aa25.33■■□□□ 1.65
SSBP3-205ENST00000417664 MTUS2Q5JR59 1369 aa25.32■■□□□ 1.64
SSBP3-205ENST00000417664 LRRIQ1Q96JM4 1722 aa25.32■■□□□ 1.64
SSBP3-205ENST00000417664 HNRNPUL2Q1KMD3 747 aaKnown RBP25.32■■□□□ 1.64
SSBP3-205ENST00000417664 EHBP1L1Q8N3D4 1523 aa25.29■■□□□ 1.64
SSBP3-205ENST00000417664 CCER1Q8TC90 406 aaPredicted RBP25.29■■□□□ 1.64
SSBP3-205ENST00000417664 PHLDB1Q86UU1 1377 aa25.28■■□□□ 1.64
SSBP3-205ENST00000417664 EPRSP07814 1512 aaKnown RBP25.28■■□□□ 1.64
SSBP3-205ENST00000417664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.27■■□□□ 1.64
SSBP3-205ENST00000417664 CHD1O14646 1710 aa25.26■■□□□ 1.63
SSBP3-205ENST00000417664 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.25■■□□□ 1.634e-6■□□□□ 8.2
SSBP3-205ENST00000417664 RAPGEF6Q8TEU7 1601 aa25.23■■□□□ 1.63
SSBP3-205ENST00000417664 SUPT6HQ7KZ85 1726 aaKnown RBP25.22■■□□□ 1.63
SSBP3-205ENST00000417664 NUP153P49790 1475 aaKnown RBP25.17■■□□□ 1.62
SSBP3-205ENST00000417664 NCOA2Q15596 1464 aa25.17■■□□□ 1.62
SSBP3-205ENST00000417664 ARHGEF11O15085 1522 aa25.16■■□□□ 1.62
SSBP3-205ENST00000417664 FGD6Q6ZV73 1430 aa25.14■■□□□ 1.61
SSBP3-205ENST00000417664 SHROOM2Q13796 1616 aa25.13■■□□□ 1.61
SSBP3-205ENST00000417664 CDK13Q14004 1512 aaKnown RBP25.13■■□□□ 1.61
SSBP3-205ENST00000417664 MAGI3Q5TCQ9 1506 aa25.13■■□□□ 1.61
SSBP3-205ENST00000417664 PRG4Q92954 1404 aaPredicted RBP25.12■■□□□ 1.61
SSBP3-205ENST00000417664 CDK11AQ9UQ88 783 aaPredicted RBP25.12■■□□□ 1.61
SSBP3-205ENST00000417664 MYOM3Q5VTT5 1437 aa25.12■■□□□ 1.61
SSBP3-205ENST00000417664 PLB1Q6P1J6 1458 aa25.08■■□□□ 1.6
SSBP3-205ENST00000417664 ABCA8O94911 1581 aa25.07■■□□□ 1.6
SSBP3-205ENST00000417664 FAM50AQ14320 339 aaKnown RBP25.07■■□□□ 1.6
SSBP3-205ENST00000417664 PTPRGP23470 1445 aa25.03■■□□□ 1.6
SSBP3-205ENST00000417664 CLASP1Q7Z460 1538 aa25.02■■□□□ 1.6
SSBP3-205ENST00000417664 MIA2Q96PC5 1412 aa25.02■■□□□ 1.6
SSBP3-205ENST00000417664 CLSPNQ9HAW4 1339 aa25.01■■□□□ 1.59
SSBP3-205ENST00000417664 ITGAEP38570 1179 aa24.99■■□□□ 1.59
SSBP3-205ENST00000417664 TROQ12816 1431 aaPredicted RBP24.99■■□□□ 1.59
SSBP3-205ENST00000417664 TCOF1Q13428 1488 aaKnown RBP24.97■■□□□ 1.59
SSBP3-205ENST00000417664 PTPN23Q9H3S7 1636 aa24.96■■□□□ 1.59
SSBP3-205ENST00000417664 SETD5Q9C0A6 1442 aa24.95■■□□□ 1.59
SSBP3-205ENST00000417664 ARID3CA6NKF2 412 aa24.94■■□□□ 1.58
SSBP3-205ENST00000417664 ADCY10Q96PN6 1610 aa24.92■■□□□ 1.58
SSBP3-205ENST00000417664 ATP10BO94823 1461 aa24.91■■□□□ 1.58
SSBP3-205ENST00000417664 DHX57Q6P158 1386 aaKnown RBP24.91■■□□□ 1.58
SSBP3-205ENST00000417664 UACAQ9BZF9 1416 aa24.9■■□□□ 1.58
SSBP3-205ENST00000417664 RAB3GAP2Q9H2M9 1393 aa24.89■■□□□ 1.58
SSBP3-205ENST00000417664 PLEKHD1A6NEE1 506 aa24.88■■□□□ 1.57
SSBP3-205ENST00000417664 ITSN2Q9NZM3 1697 aa24.82■■□□□ 1.56
SSBP3-205ENST00000417664 HFM1A2PYH4 1435 aa24.82■■□□□ 1.56
SSBP3-205ENST00000417664 ERCC6L2Q5T890 1561 aa24.81■■□□□ 1.56
SSBP3-205ENST00000417664 ABCC2Q92887 1545 aa24.81■■□□□ 1.56
SSBP3-205ENST00000417664 KIF14Q15058 1648 aa24.8■■□□□ 1.56
SSBP3-205ENST00000417664 PTPRKQ15262 1439 aa24.79■■□□□ 1.56
SSBP3-205ENST00000417664 AKNAQ7Z591 1439 aa24.78■■□□□ 1.56
SSBP3-205ENST00000417664 UHRF1BP1LA0JNW5 1464 aa24.77■■□□□ 1.56
SSBP3-205ENST00000417664 GPATCH8Q9UKJ3 1502 aaKnown RBP24.76■■□□□ 1.55
SSBP3-205ENST00000417664 ABCC10Q5T3U5 1492 aa24.73■■□□□ 1.55
SSBP3-205ENST00000417664 NAIPQ13075 1403 aa24.72■■□□□ 1.55
SSBP3-205ENST00000417664 CFDP1Q9UEE9 299 aaPredicted RBP24.72■■□□□ 1.55
SSBP3-205ENST00000417664 DNMT1P26358 1616 aaKnown RBP24.7■■□□□ 1.54
SSBP3-205ENST00000417664 OSCARQ8IYS5 282 aa24.7■■□□□ 1.54
SSBP3-205ENST00000417664 ACIN1Q9UKV3 1341 aaKnown RBP24.7■■□□□ 1.54
SSBP3-205ENST00000417664 ROCK1Q13464 1354 aa24.68■■□□□ 1.54
SSBP3-205ENST00000417664 DAPK1P53355 1430 aa24.68■■□□□ 1.54
SSBP3-205ENST00000417664 CAMSAP2Q08AD1 1489 aa24.66■■□□□ 1.54
SSBP3-205ENST00000417664 KDM5BQ9UGL1 1544 aa24.66■■□□□ 1.54
SSBP3-205ENST00000417664 GCC2Q8IWJ2 1684 aa24.65■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms