RNA–Protein interactions for RNA: ENST00000412056.5

CPNE1-206, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 998 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-206ENST00000412056 SHROOM2Q13796 1616 aa23.3■■□□□ 1.32
CPNE1-206ENST00000412056 FAM9AQ8IZU1 332 aaPredicted RBP23.3■■□□□ 1.32
CPNE1-206ENST00000412056 CSRNP3Q8WYN3 585 aa23.29■■□□□ 1.32
CPNE1-206ENST00000412056 KIAA0586Q9BVV6 1533 aa23.25■■□□□ 1.31
CPNE1-206ENST00000412056 CTTNBP2Q8WZ74 1663 aa23.25■■□□□ 1.31
CPNE1-206ENST00000412056 ERCC6L2Q5T890 1561 aa23.22■■□□□ 1.31
CPNE1-206ENST00000412056 KIF21BO75037 1637 aa23.2■■□□□ 1.3
CPNE1-206ENST00000412056 IQGAP2Q13576 1575 aa23.2■■□□□ 1.3
CPNE1-206ENST00000412056 ARAP1Q96P48 1450 aa23.17■■□□□ 1.3
CPNE1-206ENST00000412056 JPH4Q96JJ6 628 aa23.15■■□□□ 1.3
CPNE1-206ENST00000412056 PRG4Q92954 1404 aaPredicted RBP23.14■■□□□ 1.29
CPNE1-206ENST00000412056 UGGT2Q9NYU1 1516 aa23.06■■□□□ 1.28
CPNE1-206ENST00000412056 CYB5RLQ6IPT4 315 aa23.03■■□□□ 1.28
CPNE1-206ENST00000412056 GOLGA3Q08378 1498 aa23.03■■□□□ 1.28
CPNE1-206ENST00000412056 EHMT2Q96KQ7 1210 aa23.01■■□□□ 1.27
CPNE1-206ENST00000412056 DISP1Q96F81 1524 aa23■■□□□ 1.27
CPNE1-206ENST00000412056 KIAA0556O60303 1618 aa23■■□□□ 1.27
CPNE1-206ENST00000412056 CARMIL2Q6F5E8 1435 aa22.97■■□□□ 1.27
CPNE1-206ENST00000412056 UBTFP17480 764 aaKnown RBP22.9■■□□□ 1.26
CPNE1-206ENST00000412056 TNIKQ9UKE5 1360 aa22.89■■□□□ 1.26
CPNE1-206ENST00000412056 SAMD9Q5K651 1589 aa22.89■■□□□ 1.26
CPNE1-206ENST00000412056 PTPRGP23470 1445 aa22.86■■□□□ 1.25
CPNE1-206ENST00000412056 TTBK1Q5TCY1 1321 aaPredicted RBP22.84■■□□□ 1.25
CPNE1-206ENST00000412056 ADCY10Q96PN6 1610 aa22.83■■□□□ 1.25
CPNE1-206ENST00000412056 RANGAP1P46060 587 aaPredicted RBP22.83■■□□□ 1.25
CPNE1-206ENST00000412056 EFCAB5A4FU69 1503 aa22.79■■□□□ 1.24
CPNE1-206ENST00000412056 P3H3Q8IVL6 736 aa22.78■■□□□ 1.24
CPNE1-206ENST00000412056 FHOD3Q2V2M9 1422 aa22.74■■□□□ 1.23
CPNE1-206ENST00000412056 UACAQ9BZF9 1416 aa22.73■■□□□ 1.23
CPNE1-206ENST00000412056 ABCC2Q92887 1545 aa22.72■■□□□ 1.23
CPNE1-206ENST00000412056 ABCA8O94911 1581 aa22.72■■□□□ 1.23
CPNE1-206ENST00000412056 UHRF1BP1LA0JNW5 1464 aa22.71■■□□□ 1.23
CPNE1-206ENST00000412056 PLB1Q6P1J6 1458 aa22.71■■□□□ 1.23
CPNE1-206ENST00000412056 ARHGAP35Q9NRY4 1499 aa22.71■■□□□ 1.23
CPNE1-206ENST00000412056 LOC105371045A0A1W2PR82 267 aa22.66■■□□□ 1.22
CPNE1-206ENST00000412056 RAPGEF6Q8TEU7 1601 aa22.64■■□□□ 1.22
CPNE1-206ENST00000412056 ZCCHC11Q5TAX3 1644 aaKnown RBP22.64■■□□□ 1.21
CPNE1-206ENST00000412056 CLIP1P30622 1438 aa22.61■■□□□ 1.21
CPNE1-206ENST00000412056 MAPKBP1O60336 1514 aa22.61■■□□□ 1.21
CPNE1-206ENST00000412056 KDM5BQ9UGL1 1544 aa22.61■■□□□ 1.21
CPNE1-206ENST00000412056 NPM1P06748 294 aaKnown RBP eCLIP22.59■■□□□ 1.21
CPNE1-206ENST00000412056 CEP162Q5TB80 1403 aa22.57■■□□□ 1.2
CPNE1-206ENST00000412056 KIF13AQ9H1H9 1805 aa22.55■■□□□ 1.2
CPNE1-206ENST00000412056 FMN1Q68DA7 1419 aa22.53■■□□□ 1.2
CPNE1-206ENST00000412056 NUP153P49790 1475 aaKnown RBP22.53■■□□□ 1.2
CPNE1-206ENST00000412056 TRHP20396 242 aaPredicted RBP22.51■■□□□ 1.19
CPNE1-206ENST00000412056 ASXL2Q76L83 1435 aa22.5■■□□□ 1.19
CPNE1-206ENST00000412056 ARID3CA6NKF2 412 aa22.49■■□□□ 1.19
CPNE1-206ENST00000412056 PCF11O94913 1555 aaKnown RBP22.49■■□□□ 1.19
CPNE1-206ENST00000412056 DIP2BQ9P265 1576 aa22.49■■□□□ 1.19
CPNE1-206ENST00000412056 HECW1Q76N89 1606 aa22.49■■□□□ 1.19
CPNE1-206ENST00000412056 ATP10BO94823 1461 aa22.48■■□□□ 1.19
CPNE1-206ENST00000412056 LRRIQ1Q96JM4 1722 aa22.47■■□□□ 1.19
CPNE1-206ENST00000412056 ABCC10Q5T3U5 1492 aa22.46■■□□□ 1.19
CPNE1-206ENST00000412056 CDK13Q14004 1512 aaKnown RBP22.42■■□□□ 1.18
CPNE1-206ENST00000412056 WDR7Q9Y4E6 1490 aa22.42■■□□□ 1.18
CPNE1-206ENST00000412056 CASKIN1Q8WXD9 1431 aa22.4■■□□□ 1.18
CPNE1-206ENST00000412056 EPRSP07814 1512 aaKnown RBP22.38■■□□□ 1.17
CPNE1-206ENST00000412056 ATP1B4Q9UN42 357 aaPredicted RBP22.38■■□□□ 1.17
CPNE1-206ENST00000412056 FYCO1Q9BQS8 1478 aa22.37■■□□□ 1.17
CPNE1-206ENST00000412056 TSPOAP1O95153 1857 aa22.37■■□□□ 1.17
CPNE1-206ENST00000412056 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.36■■□□□ 1.17
CPNE1-206ENST00000412056 FAM69CQ0P6D2 419 aa22.36■■□□□ 1.17
CPNE1-206ENST00000412056 HNRNPUL2Q1KMD3 747 aaKnown RBP22.36■■□□□ 1.17
CPNE1-206ENST00000412056 GLI2P10070 1586 aa22.36■■□□□ 1.17
CPNE1-206ENST00000412056 MAP3K4Q9Y6R4 1608 aa22.31■■□□□ 1.16
CPNE1-206ENST00000412056 CCDC18Q5T9S5 1454 aa22.29■■□□□ 1.16
CPNE1-206ENST00000412056 PPRC1Q5VV67 1664 aaKnown RBP22.29■■□□□ 1.16
CPNE1-206ENST00000412056 CFAP43Q8NDM7 1665 aa22.29■■□□□ 1.16
CPNE1-206ENST00000412056 KCNH8Q96L42 1107 aa22.28■■□□□ 1.16
CPNE1-206ENST00000412056 VPS8Q8N3P4 1428 aa22.28■■□□□ 1.16
CPNE1-206ENST00000412056 ABCA9Q8IUA7 1624 aa22.25■■□□□ 1.15
CPNE1-206ENST00000412056 PLEKHD1A6NEE1 506 aa22.25■■□□□ 1.15
CPNE1-206ENST00000412056 MAGI3Q5TCQ9 1506 aa22.21■■□□□ 1.15
CPNE1-206ENST00000412056 KIF14Q15058 1648 aa22.2■■□□□ 1.14
CPNE1-206ENST00000412056 TROQ12816 1431 aaPredicted RBP22.19■■□□□ 1.14
CPNE1-206ENST00000412056 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.19■■□□□ 1.141e-38■■□□□ 13.2
CPNE1-206ENST00000412056 TTC37Q6PGP7 1564 aa22.19■■□□□ 1.14
CPNE1-206ENST00000412056 CDK11AQ9UQ88 783 aaPredicted RBP22.18■■□□□ 1.14
CPNE1-206ENST00000412056 CD109Q6YHK3 1445 aa22.16■■□□□ 1.14
CPNE1-206ENST00000412056 TIAM1Q13009 1591 aa22.14■■□□□ 1.13
CPNE1-206ENST00000412056 TEX14Q8IWB6 1497 aa22.12■■□□□ 1.13
CPNE1-206ENST00000412056 MYO5CQ9NQX4 1742 aa22.11■■□□□ 1.13
CPNE1-206ENST00000412056 EHBP1L1Q8N3D4 1523 aa22.09■■□□□ 1.13
CPNE1-206ENST00000412056 KDM6BO15054 1643 aa22.07■■□□□ 1.12
CPNE1-206ENST00000412056 MTUS2Q5JR59 1369 aa22.07■■□□□ 1.12
CPNE1-206ENST00000412056 MAP3K1Q13233 1512 aa22.05■■□□□ 1.12
CPNE1-206ENST00000412056 CDC42BPAQ5VT25 1732 aa22.04■■□□□ 1.12
CPNE1-206ENST00000412056 CDC42BPBQ9Y5S2 1711 aa22.03■■□□□ 1.12
CPNE1-206ENST00000412056 PREX2Q70Z35 1606 aa22.02■■□□□ 1.12
CPNE1-206ENST00000412056 CFAP74Q9C0B2 1584 aa22.01■■□□□ 1.11
CPNE1-206ENST00000412056 SUPT6HQ7KZ85 1726 aaKnown RBP22■■□□□ 1.11
CPNE1-206ENST00000412056 PLCH2O75038 1416 aa22■■□□□ 1.11
CPNE1-206ENST00000412056 LRRC9Q6ZRR7 1453 aa22■■□□□ 1.11
CPNE1-206ENST00000412056 NEO1Q92859 1461 aa21.99■■□□□ 1.11
CPNE1-206ENST00000412056 COL17A1Q9UMD9 1497 aaPredicted RBP21.99■■□□□ 1.11
CPNE1-206ENST00000412056 ARAP3Q8WWN8 1544 aa21.99■■□□□ 1.11
CPNE1-206ENST00000412056 FANCAO15360 1455 aa21.98■■□□□ 1.11
CPNE1-206ENST00000412056 ARHGAP5Q13017 1502 aa21.96■■□□□ 1.11
CPNE1-206ENST00000412056 KANK4Q5T7N3 995 aaPredicted RBP21.95■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms