RNA–Protein interactions for RNA: ENST00000403997.2

SDF4-203, Transcript of stromal cell derived factor 4, humanhuman

TSL 3

Gene SDF4, Length 728 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-203ENST00000403997 CARMIL1Q5VZK9 1371 aa22.77■■□□□ 1.24
SDF4-203ENST00000403997 PRG4Q92954 1404 aaPredicted RBP22.77■■□□□ 1.24
SDF4-203ENST00000403997 CUL7Q14999 1698 aa22.75■■□□□ 1.23
SDF4-203ENST00000403997 RUSC2Q8N2Y8 1516 aa22.7■■□□□ 1.22
SDF4-203ENST00000403997 KIAA0586Q9BVV6 1533 aa22.7■■□□□ 1.22
SDF4-203ENST00000403997 RAPGEF2Q9Y4G8 1499 aa22.56■■□□□ 1.2
SDF4-203ENST00000403997 NPM1P06748 294 aaKnown RBP eCLIP22.52■■□□□ 1.2
SDF4-203ENST00000403997 TTBK1Q5TCY1 1321 aaPredicted RBP22.51■■□□□ 1.19
SDF4-203ENST00000403997 CARMIL2Q6F5E8 1435 aa22.49■■□□□ 1.19
SDF4-203ENST00000403997 IQGAP2Q13576 1575 aa22.48■■□□□ 1.19
SDF4-203ENST00000403997 PTPRGP23470 1445 aa22.48■■□□□ 1.19
SDF4-203ENST00000403997 TNIKQ9UKE5 1360 aa22.45■■□□□ 1.18
SDF4-203ENST00000403997 ADCY10Q96PN6 1610 aa22.4■■□□□ 1.18
SDF4-203ENST00000403997 PRXQ9BXM0 1461 aa22.39■■□□□ 1.17
SDF4-203ENST00000403997 CSRNP3Q8WYN3 585 aa22.38■■□□□ 1.17
SDF4-203ENST00000403997 DISP1Q96F81 1524 aa22.36■■□□□ 1.17
SDF4-203ENST00000403997 UGGT2Q9NYU1 1516 aa22.36■■□□□ 1.17
SDF4-203ENST00000403997 FAM69CQ0P6D2 419 aa22.35■■□□□ 1.17
SDF4-203ENST00000403997 MAPKBP1O60336 1514 aa22.31■■□□□ 1.16
SDF4-203ENST00000403997 ABCC10Q5T3U5 1492 aa22.29■■□□□ 1.16
SDF4-203ENST00000403997 FAM9AQ8IZU1 332 aaPredicted RBP22.29■■□□□ 1.16
SDF4-203ENST00000403997 UACAQ9BZF9 1416 aa22.29■■□□□ 1.16
SDF4-203ENST00000403997 CTTNBP2Q8WZ74 1663 aa22.27■■□□□ 1.16
SDF4-203ENST00000403997 EEA1Q15075 1411 aa22.27■■□□□ 1.16
SDF4-203ENST00000403997 KIF13AQ9H1H9 1805 aa22.27■■□□□ 1.15
SDF4-203ENST00000403997 KIAA0556O60303 1618 aa22.26■■□□□ 1.15
SDF4-203ENST00000403997 ABCC2Q92887 1545 aa22.26■■□□□ 1.15
SDF4-203ENST00000403997 UHRF1BP1LA0JNW5 1464 aa22.24■■□□□ 1.15
SDF4-203ENST00000403997 GOLGA3Q08378 1498 aa22.24■■□□□ 1.15
SDF4-203ENST00000403997 CHIC1Q5VXU3 224 aa22.23■■□□□ 1.15
SDF4-203ENST00000403997 DIP2BQ9P265 1576 aa22.2■■□□□ 1.14
SDF4-203ENST00000403997 ASXL2Q76L83 1435 aa22.18■■□□□ 1.14
SDF4-203ENST00000403997 ILDR1Q86SU0 546 aaPredicted RBP22.17■■□□□ 1.14
SDF4-203ENST00000403997 P3H3Q8IVL6 736 aa22.17■■□□□ 1.14
SDF4-203ENST00000403997 PLB1Q6P1J6 1458 aa22.16■■□□□ 1.14
SDF4-203ENST00000403997 KDM5BQ9UGL1 1544 aa22.14■■□□□ 1.13
SDF4-203ENST00000403997 RANGAP1P46060 587 aaPredicted RBP22.12■■□□□ 1.13
SDF4-203ENST00000403997 TSPOAP1O95153 1857 aa22.07■■□□□ 1.12
SDF4-203ENST00000403997 ZCCHC11Q5TAX3 1644 aaKnown RBP22.07■■□□□ 1.12
SDF4-203ENST00000403997 ABCA8O94911 1581 aa22.05■■□□□ 1.12
SDF4-203ENST00000403997 EHMT2Q96KQ7 1210 aa22.05■■□□□ 1.12
SDF4-203ENST00000403997 GLI2P10070 1586 aa22.03■■□□□ 1.12
SDF4-203ENST00000403997 EPRSP07814 1512 aaKnown RBP22.02■■□□□ 1.12
SDF4-203ENST00000403997 ARID3CA6NKF2 412 aa22.02■■□□□ 1.12
SDF4-203ENST00000403997 UBTFP17480 764 aaKnown RBP22.01■■□□□ 1.11
SDF4-203ENST00000403997 KIF21BO75037 1637 aa22.01■■□□□ 1.11
SDF4-203ENST00000403997 KCNH8Q96L42 1107 aa22■■□□□ 1.11
SDF4-203ENST00000403997 WDR7Q9Y4E6 1490 aa21.99■■□□□ 1.11
SDF4-203ENST00000403997 SAMD9Q5K651 1589 aa21.99■■□□□ 1.11
SDF4-203ENST00000403997 KDM6BO15054 1643 aa21.95■■□□□ 1.1
SDF4-203ENST00000403997 ATP10BO94823 1461 aa21.93■■□□□ 1.1
SDF4-203ENST00000403997 FHOD3Q2V2M9 1422 aa21.93■■□□□ 1.1
SDF4-203ENST00000403997 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.91■■□□□ 1.1
SDF4-203ENST00000403997 HNRNPUL2Q1KMD3 747 aaKnown RBP21.91■■□□□ 1.1
SDF4-203ENST00000403997 PPRC1Q5VV67 1664 aaKnown RBP21.9■■□□□ 1.1
SDF4-203ENST00000403997 MAP3K4Q9Y6R4 1608 aa21.9■■□□□ 1.1
SDF4-203ENST00000403997 TEX14Q8IWB6 1497 aa21.88■■□□□ 1.09
SDF4-203ENST00000403997 RAPGEF6Q8TEU7 1601 aa21.88■■□□□ 1.09
SDF4-203ENST00000403997 CD109Q6YHK3 1445 aa21.87■■□□□ 1.09
SDF4-203ENST00000403997 EFCAB5A4FU69 1503 aa21.85■■□□□ 1.09
SDF4-203ENST00000403997 NUP153P49790 1475 aaKnown RBP21.81■■□□□ 1.08
SDF4-203ENST00000403997 COL17A1Q9UMD9 1497 aaPredicted RBP21.8■■□□□ 1.08
SDF4-203ENST00000403997 MAGI3Q5TCQ9 1506 aa21.79■■□□□ 1.08
SDF4-203ENST00000403997 PLEKHD1A6NEE1 506 aa21.78■■□□□ 1.08
SDF4-203ENST00000403997 CFAP43Q8NDM7 1665 aa21.78■■□□□ 1.08
SDF4-203ENST00000403997 ATP1B4Q9UN42 357 aaPredicted RBP21.76■■□□□ 1.07
SDF4-203ENST00000403997 ARHGAP35Q9NRY4 1499 aa21.73■■□□□ 1.07
SDF4-203ENST00000403997 FMN1Q68DA7 1419 aa21.71■■□□□ 1.07
SDF4-203ENST00000403997 KDM4FA0A1W2PPD8 638 aa21.69■■□□□ 1.06
SDF4-203ENST00000403997 ABCA9Q8IUA7 1624 aa21.68■■□□□ 1.06
SDF4-203ENST00000403997 PHLDB1Q86UU1 1377 aa21.64■■□□□ 1.06
SDF4-203ENST00000403997 CDK13Q14004 1512 aaKnown RBP21.64■■□□□ 1.05
SDF4-203ENST00000403997 ARAP3Q8WWN8 1544 aa21.61■■□□□ 1.05
SDF4-203ENST00000403997 CDK11AQ9UQ88 783 aaPredicted RBP21.61■■□□□ 1.05
SDF4-203ENST00000403997 HECW1Q76N89 1606 aa21.59■■□□□ 1.05
SDF4-203ENST00000403997 RAPGEF3O95398 923 aa21.58■■□□□ 1.05
SDF4-203ENST00000403997 NEO1Q92859 1461 aa21.58■■□□□ 1.04
SDF4-203ENST00000403997 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.55■■□□□ 1.043e-6■■■□□ 17.3
SDF4-203ENST00000403997 ADGRL1O94910 1474 aa21.53■■□□□ 1.04
SDF4-203ENST00000403997 CLIP1P30622 1438 aa21.53■■□□□ 1.04
SDF4-203ENST00000403997 FANCAO15360 1455 aa21.51■■□□□ 1.03
SDF4-203ENST00000403997 AKNAQ7Z591 1439 aa21.5■■□□□ 1.03
SDF4-203ENST00000403997 TTC37Q6PGP7 1564 aa21.49■■□□□ 1.03
SDF4-203ENST00000403997 CASKIN1Q8WXD9 1431 aa21.49■■□□□ 1.03
SDF4-203ENST00000403997 TROQ12816 1431 aaPredicted RBP21.47■■□□□ 1.03
SDF4-203ENST00000403997 PLCH2O75038 1416 aa21.46■■□□□ 1.03
SDF4-203ENST00000403997 DENND4BO75064 1496 aaPredicted RBP21.46■■□□□ 1.03
SDF4-203ENST00000403997 PCF11O94913 1555 aaKnown RBP21.44■■□□□ 1.02
SDF4-203ENST00000403997 EFCAB2Q5VUJ9 269 aa21.44■■□□□ 1.02
SDF4-203ENST00000403997 CCDC18Q5T9S5 1454 aa21.43■■□□□ 1.02
SDF4-203ENST00000403997 CFAP74Q9C0B2 1584 aa21.43■■□□□ 1.02
SDF4-203ENST00000403997 LRRIQ1Q96JM4 1722 aa21.41■■□□□ 1.02
SDF4-203ENST00000403997 KIF14Q15058 1648 aa21.4■■□□□ 1.02
SDF4-203ENST00000403997 FRMPD1Q5SYB0 1578 aa21.4■■□□□ 1.02
SDF4-203ENST00000403997 FYCO1Q9BQS8 1478 aa21.4■■□□□ 1.02
SDF4-203ENST00000403997 SCAPERQ9BY12 1400 aa21.38■■□□□ 1.01
SDF4-203ENST00000403997 ARID4BQ4LE39 1312 aaPredicted RBP21.38■■□□□ 1.01
SDF4-203ENST00000403997 LOC105371045A0A1W2PR82 267 aa21.37■■□□□ 1.01
SDF4-203ENST00000403997 MYO5CQ9NQX4 1742 aa21.35■■□□□ 1.01
SDF4-203ENST00000403997 CEP162Q5TB80 1403 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms