RNA–Protein interactions for RNA: ENST00000399848.7

LDLRAD4-203, Transcript of low density lipoprotein receptor class A domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LDLRAD4, Length 8,633 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRAD4-203ENST00000399848 MRS2Q9HD23 443 aa17.69■□□□□ 0.42
LDLRAD4-203ENST00000399848 ZRSR1Q15695 479 aaKnown RBP17.67■□□□□ 0.42
LDLRAD4-203ENST00000399848 DCAF8L1A6NGE4 600 aa17.64■□□□□ 0.41
LDLRAD4-203ENST00000399848 NPHP1O15259 732 aa17.64■□□□□ 0.41
LDLRAD4-203ENST00000399848 CASC1Q6TDU7 716 aa17.62■□□□□ 0.41
LDLRAD4-203ENST00000399848 PTMAP06454 111 aaKnown RBP17.6■□□□□ 0.41
LDLRAD4-203ENST00000399848 ERCC6Q03468 1493 aa17.6■□□□□ 0.41
LDLRAD4-203ENST00000399848 DNTTIP2Q5QJE6 756 aaKnown RBP17.58■□□□□ 0.4
LDLRAD4-203ENST00000399848 ERICH6BQ5W0A0 696 aa17.57■□□□□ 0.4
LDLRAD4-203ENST00000399848 PPP1R15AO75807 674 aaPredicted RBP17.56■□□□□ 0.4
LDLRAD4-203ENST00000399848 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.56■□□□□ 0.46e-7■■■□□ 17.8
LDLRAD4-203ENST00000399848 SCRIBQ14160 1630 aa17.54■□□□□ 0.4
LDLRAD4-203ENST00000399848 TSPY4P0CV99 314 aa17.53■□□□□ 0.4
LDLRAD4-203ENST00000399848 TSPY10P0CW01 314 aa17.53■□□□□ 0.4
LDLRAD4-203ENST00000399848 EIF4G2P78344 907 aaKnown RBP eCLIP17.52■□□□□ 0.39
LDLRAD4-203ENST00000399848 KDM2AQ9Y2K7 1162 aa17.51■□□□□ 0.39
LDLRAD4-203ENST00000399848 CHMP7Q8WUX9 453 aaPredicted RBP17.5■□□□□ 0.39
LDLRAD4-203ENST00000399848 IRX6P78412 446 aaPredicted RBP17.5■□□□□ 0.39
LDLRAD4-203ENST00000399848 MTUS2Q5JR59 1369 aa17.5■□□□□ 0.39
LDLRAD4-203ENST00000399848 PPM1GO15355 546 aaPredicted RBP17.49■□□□□ 0.39
LDLRAD4-203ENST00000399848 GOLGA6L6A8MZA4 724 aa17.49■□□□□ 0.39
LDLRAD4-203ENST00000399848 CHIC2Q9UKJ5 165 aa17.48■□□□□ 0.39
LDLRAD4-203ENST00000399848 FTSJ3Q8IY81 847 aaKnown RBP17.47■□□□□ 0.39
LDLRAD4-203ENST00000399848 FOXD1Q16676 465 aa17.45■□□□□ 0.38
LDLRAD4-203ENST00000399848 CFAP53Q96M91 514 aa17.45■□□□□ 0.38
LDLRAD4-203ENST00000399848 NRDCO43847 1150 aa17.43■□□□□ 0.38
LDLRAD4-203ENST00000399848 CDCA8Q53HL2 280 aa17.42■□□□□ 0.38
LDLRAD4-203ENST00000399848 NAP1L5Q96NT1 182 aaPredicted RBP17.42■□□□□ 0.38
LDLRAD4-203ENST00000399848 CCDC180Q9P1Z9 1646 aa17.42■□□□□ 0.38
LDLRAD4-203ENST00000399848 MIER1Q8N108 512 aa17.42■□□□□ 0.38
LDLRAD4-203ENST00000399848 ZBTB7CA1YPR0 619 aa17.4■□□□□ 0.38
LDLRAD4-203ENST00000399848 CHMP4BQ9H444 224 aaKnown RBP17.39■□□□□ 0.37
LDLRAD4-203ENST00000399848 CHAF1AQ13111 956 aaPredicted RBP17.37■□□□□ 0.37
LDLRAD4-203ENST00000399848 KNSTRNQ9Y448 316 aa17.37■□□□□ 0.37
LDLRAD4-203ENST00000399848 RSF1Q96T23 1441 aaPredicted RBP17.35■□□□□ 0.37
LDLRAD4-203ENST00000399848 TMX4Q9H1E5 349 aaPredicted RBP17.33■□□□□ 0.37
LDLRAD4-203ENST00000399848 CLIP1P30622 1438 aa17.32■□□□□ 0.36
LDLRAD4-203ENST00000399848 HSP90AB1P08238 724 aaKnown RBP17.31■□□□□ 0.36
LDLRAD4-203ENST00000399848 MS4A1P11836 297 aa17.3■□□□□ 0.36
LDLRAD4-203ENST00000399848 NOP58Q9Y2X3 529 aaKnown RBP17.29■□□□□ 0.36
LDLRAD4-203ENST00000399848 PLCB2Q00722 1185 aa17.29■□□□□ 0.36
LDLRAD4-203ENST00000399848 TPRNQ4KMQ1 711 aa17.28■□□□□ 0.36
LDLRAD4-203ENST00000399848 PLEKHG5O94827 1062 aa17.28■□□□□ 0.36
LDLRAD4-203ENST00000399848 HIRIP3Q9BW71 556 aaPredicted RBP17.28■□□□□ 0.36
LDLRAD4-203ENST00000399848 MAPK8IP3Q9UPT6 1336 aa17.28■□□□□ 0.36
LDLRAD4-203ENST00000399848 FGD1P98174 961 aa17.28■□□□□ 0.36
LDLRAD4-203ENST00000399848 RB1CC1Q8TDY2 1594 aa17.27■□□□□ 0.36
LDLRAD4-203ENST00000399848 TULP1O00294 542 aaPredicted RBP17.26■□□□□ 0.35
LDLRAD4-203ENST00000399848 SUPT16HQ9Y5B9 1047 aaKnown RBP17.26■□□□□ 0.35
LDLRAD4-203ENST00000399848 L1TD1Q5T7N2 865 aaKnown RBP17.26■□□□□ 0.35
LDLRAD4-203ENST00000399848 MSNP26038 577 aaKnown RBP17.25■□□□□ 0.35
LDLRAD4-203ENST00000399848 PPP4R2Q9NY27 417 aa17.25■□□□□ 0.35
LDLRAD4-203ENST00000399848 NUDCQ9Y266 331 aa17.24■□□□□ 0.35
LDLRAD4-203ENST00000399848 HDGFP51858 240 aaKnown RBP17.24■□□□□ 0.35
LDLRAD4-203ENST00000399848 PNNQ9H307 717 aaKnown RBP17.24■□□□□ 0.35
LDLRAD4-203ENST00000399848 GOLGA6L4A6NEF3 574 aa17.23■□□□□ 0.35
LDLRAD4-203ENST00000399848 KCNJ4P48050 445 aa17.22■□□□□ 0.35
LDLRAD4-203ENST00000399848 LAS1LQ9Y4W2 734 aaKnown RBP17.22■□□□□ 0.35
LDLRAD4-203ENST00000399848 RRP7BPQ9NSQ0 103 aa17.22■□□□□ 0.35
LDLRAD4-203ENST00000399848 CFAP44Q96MT7 982 aa17.22■□□□□ 0.35
LDLRAD4-203ENST00000399848 HSCBQ8IWL3 235 aa17.21■□□□□ 0.35
LDLRAD4-203ENST00000399848 KRI1Q8N9T8 703 aaKnown RBP17.21■□□□□ 0.35
LDLRAD4-203ENST00000399848 OS9Q13438 667 aaPredicted RBP17.2■□□□□ 0.34
LDLRAD4-203ENST00000399848 GOLGA3Q08378 1498 aa17.2■□□□□ 0.34
LDLRAD4-203ENST00000399848 RGS3P49796 1198 aa17.19■□□□□ 0.34
LDLRAD4-203ENST00000399848 ZCCHC6Q5VYS8 1495 aaKnown RBP17.19■□□□□ 0.34
LDLRAD4-203ENST00000399848 EEA1Q15075 1411 aa17.18■□□□□ 0.34
LDLRAD4-203ENST00000399848 LMOD2Q6P5Q4 547 aa17.18■□□□□ 0.34
LDLRAD4-203ENST00000399848 MCCP23508 829 aa17.18■□□□□ 0.34
LDLRAD4-203ENST00000399848 GOLGA2Q08379 1002 aa17.18■□□□□ 0.34
LDLRAD4-203ENST00000399848 RTN4Q9NQC3 1192 aaKnown RBP17.17■□□□□ 0.34
LDLRAD4-203ENST00000399848 CARD11Q9BXL7 1154 aa17.16■□□□□ 0.34
LDLRAD4-203ENST00000399848 RGL3Q3MIN7 710 aa17.14■□□□□ 0.34
LDLRAD4-203ENST00000399848 DRC7Q8IY82 874 aa17.14■□□□□ 0.34
LDLRAD4-203ENST00000399848 NAP1L2Q9ULW6 460 aaPredicted RBP17.14■□□□□ 0.33
LDLRAD4-203ENST00000399848 PTMSP20962 102 aa17.14■□□□□ 0.33
LDLRAD4-203ENST00000399848 FRAT1Q92837 279 aaPredicted RBP17.14■□□□□ 0.33
LDLRAD4-203ENST00000399848 PLEKHD1A6NEE1 506 aa17.12■□□□□ 0.33
LDLRAD4-203ENST00000399848 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
LDLRAD4-203ENST00000399848 PHF23Q9BUL5 403 aaPredicted RBP17.11■□□□□ 0.33
LDLRAD4-203ENST00000399848 SENP3Q9H4L4 574 aaPredicted RBP17.1■□□□□ 0.33
LDLRAD4-203ENST00000399848 KAT6BQ8WYB5 2073 aa17.1■□□□□ 0.33
LDLRAD4-203ENST00000399848 KIAA2012Q0VF49 1180 aa17.1■□□□□ 0.33
LDLRAD4-203ENST00000399848 TAOK2Q9UL54 1235 aa17.1■□□□□ 0.33
LDLRAD4-203ENST00000399848 CEP162Q5TB80 1403 aa17.09■□□□□ 0.33
LDLRAD4-203ENST00000399848 KCNH8Q96L42 1107 aa17.06■□□□□ 0.32
LDLRAD4-203ENST00000399848 POGKQ9P215 609 aa17.06■□□□□ 0.32
LDLRAD4-203ENST00000399848 GNL2Q13823 731 aaKnown RBP17.04■□□□□ 0.32
LDLRAD4-203ENST00000399848 CFDP1Q9UEE9 299 aaPredicted RBP17.04■□□□□ 0.32
LDLRAD4-203ENST00000399848 GBP4Q96PP9 640 aa17.03■□□□□ 0.32
LDLRAD4-203ENST00000399848 CLSTN1O94985 981 aa17.03■□□□□ 0.32
LDLRAD4-203ENST00000399848 U2SURPO15042 1029 aaKnown RBP17.01■□□□□ 0.31
LDLRAD4-203ENST00000399848 MEX3CQ5U5Q3 659 aaKnown RBP17.01■□□□□ 0.31
LDLRAD4-203ENST00000399848 SYAP1Q96A49 352 aaPredicted RBP17.01■□□□□ 0.31
LDLRAD4-203ENST00000399848 NOC3LQ8WTT2 800 aaKnown RBP17■□□□□ 0.31
LDLRAD4-203ENST00000399848 B4GALNT3Q6L9W6 998 aa17■□□□□ 0.31
LDLRAD4-203ENST00000399848 KIAA1211Q6ZU35 1233 aa17■□□□□ 0.31
LDLRAD4-203ENST00000399848 CCDC9Q9Y3X0 531 aaKnown RBP16.99■□□□□ 0.31
LDLRAD4-203ENST00000399848 SENP3-EIF4A1A0A087X0R7 540 aa16.99■□□□□ 0.31
LDLRAD4-203ENST00000399848 HTATSF1O43719 755 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms