RNA–Protein interactions for RNA: ENST00000398179.3

CCBE1-201, Transcript of collagen and calcium binding EGF domains 1, humanhuman

TSL 5 BASIC

Gene CCBE1, Length 5,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCBE1-201ENST00000398179 NEFMP07197 916 aa17.15■□□□□ 0.34
CCBE1-201ENST00000398179 ZBTB47Q9UFB7 747 aaPredicted RBP17.15■□□□□ 0.34
CCBE1-201ENST00000398179 ITGAEP38570 1179 aa17.15■□□□□ 0.34
CCBE1-201ENST00000398179 CHIC1Q5VXU3 224 aa17.15■□□□□ 0.34
CCBE1-201ENST00000398179 PSMD1Q99460 953 aa17.14■□□□□ 0.33
CCBE1-201ENST00000398179 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.12■□□□□ 0.33
CCBE1-201ENST00000398179 HNRNPUL2Q1KMD3 747 aaKnown RBP17.11■□□□□ 0.33
CCBE1-201ENST00000398179 USP35Q9P2H5 1018 aa17.1■□□□□ 0.33
CCBE1-201ENST00000398179 LOC105371045A0A1W2PR82 267 aa17.08■□□□□ 0.32
CCBE1-201ENST00000398179 NEFHP12036 1026 aa17.07■□□□□ 0.32
CCBE1-201ENST00000398179 STK11IPQ8N1F8 1099 aa17.06■□□□□ 0.32
CCBE1-201ENST00000398179 CSRNP3Q8WYN3 585 aa17.06■□□□□ 0.32
CCBE1-201ENST00000398179 HMGB1P1B2RPK0 211 aaPredicted RBP16.99■□□□□ 0.31
CCBE1-201ENST00000398179 GOLGA6L22H0YM25 854 aa16.98■□□□□ 0.31
CCBE1-201ENST00000398179 CLSTN1O94985 981 aa16.98■□□□□ 0.31
CCBE1-201ENST00000398179 PNNQ9H307 717 aaKnown RBP16.97■□□□□ 0.31
CCBE1-201ENST00000398179 PPM1GO15355 546 aaPredicted RBP16.96■□□□□ 0.31
CCBE1-201ENST00000398179 PLCD4Q9BRC7 762 aa16.96■□□□□ 0.31
CCBE1-201ENST00000398179 GOLGA6L6A8MZA4 724 aa16.94■□□□□ 0.3
CCBE1-201ENST00000398179 ANO8Q9HCE9 1232 aaPredicted RBP16.93■□□□□ 0.3
CCBE1-201ENST00000398179 PAXIP1Q6ZW49 1069 aaPredicted RBP16.91■□□□□ 0.3
CCBE1-201ENST00000398179 BCCIPQ9P287 314 aaKnown RBP eCLIP16.89■□□□□ 0.29
CCBE1-201ENST00000398179 TAF3Q5VWG9 929 aa16.88■□□□□ 0.29
CCBE1-201ENST00000398179 OS9Q13438 667 aaPredicted RBP16.87■□□□□ 0.29
CCBE1-201ENST00000398179 SETQ01105 290 aaPredicted RBP16.86■□□□□ 0.29
CCBE1-201ENST00000398179 L1TD1Q5T7N2 865 aaKnown RBP16.85■□□□□ 0.29
CCBE1-201ENST00000398179 DDRGK1Q96HY6 314 aa16.83■□□□□ 0.29
CCBE1-201ENST00000398179 CHMP4AQ9BY43 222 aa16.83■□□□□ 0.29
CCBE1-201ENST00000398179 SLC4A1APQ9BWU0 796 aaKnown RBP16.83■□□□□ 0.28
CCBE1-201ENST00000398179 CHAF1AQ13111 956 aaPredicted RBP16.81■□□□□ 0.28
CCBE1-201ENST00000398179 GOLGA6L3A6NEY3 463 aa16.81■□□□□ 0.28
CCBE1-201ENST00000398179 WWC1Q8IX03 1113 aa16.8■□□□□ 0.28
CCBE1-201ENST00000398179 ANP32CO43423 234 aa16.79■□□□□ 0.28
CCBE1-201ENST00000398179 MEX3CQ5U5Q3 659 aaKnown RBP16.79■□□□□ 0.28
CCBE1-201ENST00000398179 NEUROD1Q13562 356 aa16.78■□□□□ 0.28
CCBE1-201ENST00000398179 GOLGA6L1Q8N7Z2 621 aa16.77■□□□□ 0.28
CCBE1-201ENST00000398179 BCL11BQ9C0K0 894 aaPredicted RBP16.76■□□□□ 0.27
CCBE1-201ENST00000398179 CC2D1BQ5T0F9 858 aaKnown RBP16.76■□□□□ 0.27
CCBE1-201ENST00000398179 AXDND1Q5T1B0 1012 aaPredicted RBP16.76■□□□□ 0.27
CCBE1-201ENST00000398179 SSR1P43307 286 aaKnown RBP16.74■□□□□ 0.27
CCBE1-201ENST00000398179 CFAP44Q96MT7 982 aa16.72■□□□□ 0.27
CCBE1-201ENST00000398179 NOP58Q9Y2X3 529 aaKnown RBP16.72■□□□□ 0.27
CCBE1-201ENST00000398179 KCNA4P22459 653 aa16.71■□□□□ 0.27
CCBE1-201ENST00000398179 TMX4Q9H1E5 349 aaPredicted RBP16.69■□□□□ 0.26
CCBE1-201ENST00000398179 DHX37Q8IY37 1157 aaKnown RBP16.69■□□□□ 0.26
CCBE1-201ENST00000398179 CLGNO14967 610 aa16.67■□□□□ 0.26
CCBE1-201ENST00000398179 IRX3P78415 501 aaPredicted RBP16.66■□□□□ 0.26
CCBE1-201ENST00000398179 MAP7D2Q96T17 732 aa16.66■□□□□ 0.26
CCBE1-201ENST00000398179 FKBP8Q14318 412 aa16.65■□□□□ 0.26
CCBE1-201ENST00000398179 LMOD2Q6P5Q4 547 aa16.64■□□□□ 0.26
CCBE1-201ENST00000398179 MSNP26038 577 aaKnown RBP16.63■□□□□ 0.25
CCBE1-201ENST00000398179 BBXQ8WY36 941 aaPredicted RBP16.62■□□□□ 0.25
CCBE1-201ENST00000398179 MTERF4Q7Z6M4 381 aaKnown RBP16.6■□□□□ 0.25
CCBE1-201ENST00000398179 UPF2Q9HAU5 1272 aaKnown RBP16.6■□□□□ 0.25
CCBE1-201ENST00000398179 PAIP2Q9BPZ3 127 aaKnown RBP16.6■□□□□ 0.25
CCBE1-201ENST00000398179 RBM10P98175 930 aaKnown RBP16.58■□□□□ 0.24
CCBE1-201ENST00000398179 RRP9O43818 475 aaKnown RBP16.58■□□□□ 0.24
CCBE1-201ENST00000398179 NOM1Q5C9Z4 860 aaKnown RBP16.57■□□□□ 0.24
CCBE1-201ENST00000398179 FAM193AP78312 1265 aa16.57■□□□□ 0.24
CCBE1-201ENST00000398179 SALL2Q9Y467 1007 aaPredicted RBP16.57■□□□□ 0.24
CCBE1-201ENST00000398179 ZNF771Q7L3S4 317 aaPredicted RBP16.56■□□□□ 0.24
CCBE1-201ENST00000398179 NAP1L2Q9ULW6 460 aaPredicted RBP16.55■□□□□ 0.24
CCBE1-201ENST00000398179 CCDC66A2RUB6 948 aa16.55■□□□□ 0.24
CCBE1-201ENST00000398179 TSPYL1Q9H0U9 437 aa16.53■□□□□ 0.24
CCBE1-201ENST00000398179 ZMYND15Q9H091 742 aa16.52■□□□□ 0.23
CCBE1-201ENST00000398179 FAM50AQ14320 339 aaKnown RBP16.52■□□□□ 0.23
CCBE1-201ENST00000398179 FGD1P98174 961 aa16.51■□□□□ 0.23
CCBE1-201ENST00000398179 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.5■□□□□ 0.23
CCBE1-201ENST00000398179 KIAA2012Q0VF49 1180 aa16.48■□□□□ 0.23
CCBE1-201ENST00000398179 RBM25P49756 843 aaKnown RBP16.47■□□□□ 0.23
CCBE1-201ENST00000398179 TRIM52Q96A61 297 aa16.47■□□□□ 0.23
CCBE1-201ENST00000398179 RBM28Q9NW13 759 aaKnown RBP16.47■□□□□ 0.23
CCBE1-201ENST00000398179 PLCB2Q00722 1185 aa16.46■□□□□ 0.22
CCBE1-201ENST00000398179 BECN1Q14457 450 aa16.45■□□□□ 0.22
CCBE1-201ENST00000398179 IRX6P78412 446 aaPredicted RBP16.44■□□□□ 0.22
CCBE1-201ENST00000398179 GPATCH11Q8N954 259 aa16.4■□□□□ 0.22
CCBE1-201ENST00000398179 TMEM132AQ24JP5 1023 aa16.4■□□□□ 0.22
CCBE1-201ENST00000398179 PPP1R1BQ9UD71 204 aaPredicted RBP16.4■□□□□ 0.22
CCBE1-201ENST00000398179 TPM2P07951 284 aa16.39■□□□□ 0.21
CCBE1-201ENST00000398179 FTSJ3Q8IY81 847 aaKnown RBP16.39■□□□□ 0.21
CCBE1-201ENST00000398179 ZNF592Q92610 1267 aa16.38■□□□□ 0.21
CCBE1-201ENST00000398179 ZNF622Q969S3 477 aaKnown RBP eCLIP16.38■□□□□ 0.21
CCBE1-201ENST00000398179 AEBP1Q8IUX7 1158 aa16.37■□□□□ 0.21
CCBE1-201ENST00000398179 TICAM2Q86XR7 235 aa16.35■□□□□ 0.21
CCBE1-201ENST00000398179 WDR78Q5VTH9 848 aa16.34■□□□□ 0.21
CCBE1-201ENST00000398179 SETSIPP0DME0 302 aa16.32■□□□□ 0.2
CCBE1-201ENST00000398179 CASC1Q6TDU7 716 aa16.32■□□□□ 0.2
CCBE1-201ENST00000398179 MRVI1Q9Y6F6 885 aa16.32■□□□□ 0.2
CCBE1-201ENST00000398179 IPO4Q8TEX9 1081 aaKnown RBP16.31■□□□□ 0.2
CCBE1-201ENST00000398179 TMCO5BA8MYB1 307 aa16.31■□□□□ 0.2
CCBE1-201ENST00000398179 HNRNPUQ00839 825 aaKnown RBP eCLIP16.29■□□□□ 0.2
CCBE1-201ENST00000398179 FAM9BQ8IZU0 186 aa16.29■□□□□ 0.2
CCBE1-201ENST00000398179 SUDS3Q9H7L9 328 aaPredicted RBP16.29■□□□□ 0.2
CCBE1-201ENST00000398179 CWC15Q9P013 229 aaKnown RBP16.29■□□□□ 0.2
CCBE1-201ENST00000398179 CHMP3Q9Y3E7 222 aa16.28■□□□□ 0.2
CCBE1-201ENST00000398179 MCCP23508 829 aa16.27■□□□□ 0.2
CCBE1-201ENST00000398179 MAPK8IP2Q13387 824 aaPredicted RBP16.27■□□□□ 0.19
CCBE1-201ENST00000398179 ARID4AP29374 1257 aaPredicted RBP16.26■□□□□ 0.19
CCBE1-201ENST00000398179 RBM19Q9Y4C8 960 aaKnown RBP16.26■□□□□ 0.19
CCBE1-201ENST00000398179 TEX35Q5T0J7 233 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 339.8 ms