RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 PRG4Q92954 1404 aaPredicted RBP23.76■■□□□ 1.39
SEC13-204ENST00000397099 JPH4Q96JJ6 628 aa23.76■■□□□ 1.39
SEC13-204ENST00000397099 CARMIL1Q5VZK9 1371 aa23.76■■□□□ 1.39
SEC13-204ENST00000397099 KIAA0586Q9BVV6 1533 aa23.73■■□□□ 1.39
SEC13-204ENST00000397099 RAPGEF2Q9Y4G8 1499 aa23.62■■□□□ 1.37
SEC13-204ENST00000397099 IQGAP2Q13576 1575 aa23.56■■□□□ 1.36
SEC13-204ENST00000397099 CARMIL2Q6F5E8 1435 aa23.52■■□□□ 1.36
SEC13-204ENST00000397099 NPM1P06748 294 aaKnown RBP eCLIP23.52■■□□□ 1.36
SEC13-204ENST00000397099 TTBK1Q5TCY1 1321 aaPredicted RBP23.47■■□□□ 1.35
SEC13-204ENST00000397099 EEA1Q15075 1411 aa23.47■■□□□ 1.35
SEC13-204ENST00000397099 PRXQ9BXM0 1461 aa23.45■■□□□ 1.34
SEC13-204ENST00000397099 CTTNBP2Q8WZ74 1663 aa23.44■■□□□ 1.34
SEC13-204ENST00000397099 ADCY10Q96PN6 1610 aa23.44■■□□□ 1.34
SEC13-204ENST00000397099 UGGT2Q9NYU1 1516 aa23.42■■□□□ 1.34
SEC13-204ENST00000397099 PTPRGP23470 1445 aa23.42■■□□□ 1.34
SEC13-204ENST00000397099 TNIKQ9UKE5 1360 aa23.41■■□□□ 1.34
SEC13-204ENST00000397099 FAM69CQ0P6D2 419 aa23.38■■□□□ 1.33
SEC13-204ENST00000397099 KIF13AQ9H1H9 1805 aa23.38■■□□□ 1.33
SEC13-204ENST00000397099 CSRNP3Q8WYN3 585 aa23.37■■□□□ 1.33
SEC13-204ENST00000397099 MAPKBP1O60336 1514 aa23.36■■□□□ 1.33
SEC13-204ENST00000397099 DISP1Q96F81 1524 aa23.35■■□□□ 1.33
SEC13-204ENST00000397099 ABCC10Q5T3U5 1492 aa23.34■■□□□ 1.33
SEC13-204ENST00000397099 GOLGA3Q08378 1498 aa23.33■■□□□ 1.33
SEC13-204ENST00000397099 KIAA0556O60303 1618 aa23.3■■□□□ 1.32
SEC13-204ENST00000397099 UHRF1BP1LA0JNW5 1464 aa23.29■■□□□ 1.32
SEC13-204ENST00000397099 DIP2BQ9P265 1576 aa23.28■■□□□ 1.32
SEC13-204ENST00000397099 ABCC2Q92887 1545 aa23.25■■□□□ 1.31
SEC13-204ENST00000397099 UACAQ9BZF9 1416 aa23.25■■□□□ 1.31
SEC13-204ENST00000397099 FAM9AQ8IZU1 332 aaPredicted RBP23.23■■□□□ 1.31
SEC13-204ENST00000397099 CHIC1Q5VXU3 224 aa23.22■■□□□ 1.31
SEC13-204ENST00000397099 AEBP2Q6ZN18 517 aaPredicted RBP23.22■■□□□ 1.31
SEC13-204ENST00000397099 KIF21BO75037 1637 aa23.18■■□□□ 1.3
SEC13-204ENST00000397099 ASXL2Q76L83 1435 aa23.16■■□□□ 1.3
SEC13-204ENST00000397099 PLB1Q6P1J6 1458 aa23.15■■□□□ 1.3
SEC13-204ENST00000397099 KDM5BQ9UGL1 1544 aa23.14■■□□□ 1.3
SEC13-204ENST00000397099 TSPOAP1O95153 1857 aa23.13■■□□□ 1.29
SEC13-204ENST00000397099 SAMD9Q5K651 1589 aa23.09■■□□□ 1.29
SEC13-204ENST00000397099 KDM6BO15054 1643 aa23.08■■□□□ 1.28
SEC13-204ENST00000397099 ZCCHC11Q5TAX3 1644 aaKnown RBP23.07■■□□□ 1.28
SEC13-204ENST00000397099 ABCA8O94911 1581 aa23.06■■□□□ 1.28
SEC13-204ENST00000397099 GLI2P10070 1586 aa23.05■■□□□ 1.28
SEC13-204ENST00000397099 EPRSP07814 1512 aaKnown RBP23.02■■□□□ 1.28
SEC13-204ENST00000397099 EFCAB5A4FU69 1503 aa23■■□□□ 1.27
SEC13-204ENST00000397099 P3H3Q8IVL6 736 aa23■■□□□ 1.27
SEC13-204ENST00000397099 WDR7Q9Y4E6 1490 aa22.97■■□□□ 1.27
SEC13-204ENST00000397099 PPRC1Q5VV67 1664 aaKnown RBP22.93■■□□□ 1.26
SEC13-204ENST00000397099 UBTFP17480 764 aaKnown RBP22.93■■□□□ 1.26
SEC13-204ENST00000397099 RANGAP1P46060 587 aaPredicted RBP22.93■■□□□ 1.26
SEC13-204ENST00000397099 RAPGEF6Q8TEU7 1601 aa22.92■■□□□ 1.26
SEC13-204ENST00000397099 MAP3K4Q9Y6R4 1608 aa22.92■■□□□ 1.26
SEC13-204ENST00000397099 ARID3CA6NKF2 412 aa22.91■■□□□ 1.26
SEC13-204ENST00000397099 KCNH8Q96L42 1107 aa22.91■■□□□ 1.26
SEC13-204ENST00000397099 TEX14Q8IWB6 1497 aa22.91■■□□□ 1.26
SEC13-204ENST00000397099 ATP10BO94823 1461 aa22.85■■□□□ 1.25
SEC13-204ENST00000397099 FHOD3Q2V2M9 1422 aa22.85■■□□□ 1.25
SEC13-204ENST00000397099 CFAP43Q8NDM7 1665 aa22.84■■□□□ 1.25
SEC13-204ENST00000397099 CD109Q6YHK3 1445 aa22.82■■□□□ 1.24
SEC13-204ENST00000397099 FMN1Q68DA7 1419 aa22.8■■□□□ 1.24
SEC13-204ENST00000397099 COL17A1Q9UMD9 1497 aaPredicted RBP22.79■■□□□ 1.24
SEC13-204ENST00000397099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.79■■□□□ 1.24
SEC13-204ENST00000397099 HNRNPUL2Q1KMD3 747 aaKnown RBP22.79■■□□□ 1.24
SEC13-204ENST00000397099 EHMT2Q96KQ7 1210 aa22.79■■□□□ 1.24
SEC13-204ENST00000397099 NUP153P49790 1475 aaKnown RBP22.79■■□□□ 1.24
SEC13-204ENST00000397099 MAGI3Q5TCQ9 1506 aa22.77■■□□□ 1.24
SEC13-204ENST00000397099 KDM4FA0A1W2PPD8 638 aa22.77■■□□□ 1.24
SEC13-204ENST00000397099 ARHGAP35Q9NRY4 1499 aa22.73■■□□□ 1.23
SEC13-204ENST00000397099 ABCA9Q8IUA7 1624 aa22.71■■□□□ 1.23
SEC13-204ENST00000397099 PLEKHD1A6NEE1 506 aa22.7■■□□□ 1.22
SEC13-204ENST00000397099 HECW1Q76N89 1606 aa22.68■■□□□ 1.22
SEC13-204ENST00000397099 PHLDB1Q86UU1 1377 aa22.67■■□□□ 1.22
SEC13-204ENST00000397099 ADGRL1O94910 1474 aa22.64■■□□□ 1.21
SEC13-204ENST00000397099 CDK11AQ9UQ88 783 aaPredicted RBP22.62■■□□□ 1.21
SEC13-204ENST00000397099 ARAP3Q8WWN8 1544 aa22.59■■□□□ 1.21
SEC13-204ENST00000397099 NEO1Q92859 1461 aa22.59■■□□□ 1.21
SEC13-204ENST00000397099 ATP1B4Q9UN42 357 aaPredicted RBP22.57■■□□□ 1.2
SEC13-204ENST00000397099 CDK13Q14004 1512 aaKnown RBP22.56■■□□□ 1.2
SEC13-204ENST00000397099 CLIP1P30622 1438 aa22.55■■□□□ 1.2
SEC13-204ENST00000397099 CFAP74Q9C0B2 1584 aa22.55■■□□□ 1.2
SEC13-204ENST00000397099 CASKIN1Q8WXD9 1431 aa22.54■■□□□ 1.2
SEC13-204ENST00000397099 CCDC18Q5T9S5 1454 aa22.54■■□□□ 1.2
SEC13-204ENST00000397099 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.52■■□□□ 1.194e-7■■■■□ 22.2
SEC13-204ENST00000397099 FYCO1Q9BQS8 1478 aa22.5■■□□□ 1.19
SEC13-204ENST00000397099 RAPGEF3O95398 923 aa22.49■■□□□ 1.19
SEC13-204ENST00000397099 TROQ12816 1431 aaPredicted RBP22.47■■□□□ 1.19
SEC13-204ENST00000397099 PCF11O94913 1555 aaKnown RBP22.46■■□□□ 1.19
SEC13-204ENST00000397099 KIF14Q15058 1648 aa22.46■■□□□ 1.19
SEC13-204ENST00000397099 TTC37Q6PGP7 1564 aa22.46■■□□□ 1.19
SEC13-204ENST00000397099 LRRIQ1Q96JM4 1722 aa22.45■■□□□ 1.18
SEC13-204ENST00000397099 FANCAO15360 1455 aa22.44■■□□□ 1.18
SEC13-204ENST00000397099 PLCH2O75038 1416 aa22.42■■□□□ 1.18
SEC13-204ENST00000397099 MYO5CQ9NQX4 1742 aa22.42■■□□□ 1.18
SEC13-204ENST00000397099 AKNAQ7Z591 1439 aa22.41■■□□□ 1.18
SEC13-204ENST00000397099 DENND4BO75064 1496 aaPredicted RBP22.39■■□□□ 1.17
SEC13-204ENST00000397099 FRMPD1Q5SYB0 1578 aa22.38■■□□□ 1.17
SEC13-204ENST00000397099 CEP162Q5TB80 1403 aa22.38■■□□□ 1.17
SEC13-204ENST00000397099 ARID4BQ4LE39 1312 aaPredicted RBP22.35■■□□□ 1.17
SEC13-204ENST00000397099 EFCAB2Q5VUJ9 269 aa22.35■■□□□ 1.17
SEC13-204ENST00000397099 RICTORQ6R327 1708 aa22.34■■□□□ 1.17
SEC13-204ENST00000397099 MAGI2Q86UL8 1455 aa22.3■■□□□ 1.16
SEC13-204ENST00000397099 ZMYM4Q5VZL5 1548 aa22.3■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms