RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 NCLP19338 710 aaKnown RBP9.53□□□□□ -0.88
UPF2-203ENST00000397053 NCBP3Q53F19 620 aaKnown RBP9.53□□□□□ -0.88
UPF2-203ENST00000397053 PPM1GO15355 546 aaPredicted RBP9.51□□□□□ -0.89
UPF2-203ENST00000397053 TRHP20396 242 aaPredicted RBP9.51□□□□□ -0.89
UPF2-203ENST00000397053 DDX10Q13206 875 aaKnown RBP9.51□□□□□ -0.89
UPF2-203ENST00000397053 FKBP8Q14318 412 aa9.51□□□□□ -0.89
UPF2-203ENST00000397053 MRS2Q9HD23 443 aa9.49□□□□□ -0.89
UPF2-203ENST00000397053 CFAP53Q96M91 514 aa9.48□□□□□ -0.89
UPF2-203ENST00000397053 GOLGA2Q08379 1002 aa9.47□□□□□ -0.89
UPF2-203ENST00000397053 TAOK2Q9UL54 1235 aa9.46□□□□□ -0.89
UPF2-203ENST00000397053 GLIPR1L2Q4G1C9 344 aa9.46□□□□□ -0.9
UPF2-203ENST00000397053 PLEKHD1A6NEE1 506 aa9.46□□□□□ -0.9
UPF2-203ENST00000397053 RGL3Q3MIN7 710 aa9.45□□□□□ -0.9
UPF2-203ENST00000397053 MTUS2Q5JR59 1369 aa9.45□□□□□ -0.9
UPF2-203ENST00000397053 GOLGA6L22H0YM25 854 aa9.44□□□□□ -0.9
UPF2-203ENST00000397053 POGKQ9P215 609 aa9.43□□□□□ -0.9
UPF2-203ENST00000397053 FGD1P98174 961 aa9.43□□□□□ -0.9
UPF2-203ENST00000397053 CLSTN1O94985 981 aa9.43□□□□□ -0.9
UPF2-203ENST00000397053 ISY1Q9ULR0 285 aaKnown RBP9.43□□□□□ -0.9
UPF2-203ENST00000397053 CASC1Q6TDU7 716 aa9.41□□□□□ -0.9
UPF2-203ENST00000397053 TPRNQ4KMQ1 711 aa9.41□□□□□ -0.9
UPF2-203ENST00000397053 CDCA8Q53HL2 280 aa9.41□□□□□ -0.9
UPF2-203ENST00000397053 LAS1LQ9Y4W2 734 aaKnown RBP9.41□□□□□ -0.9
UPF2-203ENST00000397053 EIF4G2P78344 907 aaKnown RBP eCLIP9.41□□□□□ -0.9
UPF2-203ENST00000397053 OS9Q13438 667 aaPredicted RBP9.4□□□□□ -0.9
UPF2-203ENST00000397053 BECN1Q14457 450 aa9.4□□□□□ -0.9
UPF2-203ENST00000397053 MAPK8IP3Q9UPT6 1336 aa9.4□□□□□ -0.9
UPF2-203ENST00000397053 NUDCQ9Y266 331 aa9.39□□□□□ -0.91
UPF2-203ENST00000397053 PTMAP06454 111 aaKnown RBP9.39□□□□□ -0.91
UPF2-203ENST00000397053 TRIM44Q96DX7 344 aaPredicted RBP9.39□□□□□ -0.91
UPF2-203ENST00000397053 NBR1Q14596 966 aa9.39□□□□□ -0.91
UPF2-203ENST00000397053 KNSTRNQ9Y448 316 aa9.39□□□□□ -0.91
UPF2-203ENST00000397053 FTSJ3Q8IY81 847 aaKnown RBP9.38□□□□□ -0.91
UPF2-203ENST00000397053 NEUROD2Q15784 382 aa9.38□□□□□ -0.91
UPF2-203ENST00000397053 KCNJ4P48050 445 aa9.38□□□□□ -0.91
UPF2-203ENST00000397053 NAP1L2Q9ULW6 460 aaPredicted RBP9.38□□□□□ -0.91
UPF2-203ENST00000397053 RRP7BPQ9NSQ0 103 aa9.38□□□□□ -0.91
UPF2-203ENST00000397053 ANP32EQ9BTT0 268 aa9.37□□□□□ -0.91
UPF2-203ENST00000397053 MLECQ14165 292 aa9.36□□□□□ -0.91
UPF2-203ENST00000397053 ACIN1Q9UKV3 1341 aaKnown RBP9.35□□□□□ -0.91
UPF2-203ENST00000397053 HDGFP51858 240 aaKnown RBP9.35□□□□□ -0.91
UPF2-203ENST00000397053 SOX12O15370 315 aa9.35□□□□□ -0.91
UPF2-203ENST00000397053 TMX4Q9H1E5 349 aaPredicted RBP9.35□□□□□ -0.91
UPF2-203ENST00000397053 DNTTIP2Q5QJE6 756 aaKnown RBP9.34□□□□□ -0.91
UPF2-203ENST00000397053 PLCB2Q00722 1185 aa9.33□□□□□ -0.92
UPF2-203ENST00000397053 CFDP1Q9UEE9 299 aaPredicted RBP9.33□□□□□ -0.92
UPF2-203ENST00000397053 NRDCO43847 1150 aa9.33□□□□□ -0.92
UPF2-203ENST00000397053 HIRIP3Q9BW71 556 aaPredicted RBP9.33□□□□□ -0.92
UPF2-203ENST00000397053 IRX6P78412 446 aaPredicted RBP9.32□□□□□ -0.92
UPF2-203ENST00000397053 U2SURPO15042 1029 aaKnown RBP9.32□□□□□ -0.92
UPF2-203ENST00000397053 TNNT2P45379 298 aaPredicted RBP9.32□□□□□ -0.92
UPF2-203ENST00000397053 CHMP4BQ9H444 224 aaKnown RBP9.32□□□□□ -0.92
UPF2-203ENST00000397053 CCDC9Q9Y3X0 531 aaKnown RBP9.32□□□□□ -0.92
UPF2-203ENST00000397053 PRM3Q9NNZ6 103 aa9.3□□□□□ -0.92
UPF2-203ENST00000397053 ZNF330Q9Y3S2 320 aaPredicted RBP9.3□□□□□ -0.92
UPF2-203ENST00000397053 GOLGA6L4A6NEF3 574 aa9.3□□□□□ -0.92
UPF2-203ENST00000397053 DDRGK1Q96HY6 314 aa9.3□□□□□ -0.92
UPF2-203ENST00000397053 GOLGA6L6A8MZA4 724 aa9.29□□□□□ -0.92
UPF2-203ENST00000397053 CSB-PGBD3P0DP91 1061 aa9.29□□□□□ -0.92
UPF2-203ENST00000397053 SENP3-EIF4A1A0A087X0R7 540 aa9.29□□□□□ -0.92
UPF2-203ENST00000397053 FRAT1Q92837 279 aaPredicted RBP9.28□□□□□ -0.92
UPF2-203ENST00000397053 CARD11Q9BXL7 1154 aa9.28□□□□□ -0.92
UPF2-203ENST00000397053 PNNQ9H307 717 aaKnown RBP9.27□□□□□ -0.93
UPF2-203ENST00000397053 MS4A1P11836 297 aa9.25□□□□□ -0.93
UPF2-203ENST00000397053 SRPK2P78362 688 aaKnown RBP9.25□□□□□ -0.93
UPF2-203ENST00000397053 G3V3G9 751 aa9.25□□□□□ -0.93
UPF2-203ENST00000397053 DCAF8Q5TAQ9 597 aa9.25□□□□□ -0.93
UPF2-203ENST00000397053 RTF1Q92541 710 aaKnown RBP9.25□□□□□ -0.93
UPF2-203ENST00000397053 PAK3O75914 559 aaPredicted RBP9.24□□□□□ -0.93
UPF2-203ENST00000397053 GNL2Q13823 731 aaKnown RBP9.24□□□□□ -0.93
UPF2-203ENST00000397053 RSF1Q96T23 1441 aaPredicted RBP9.23□□□□□ -0.93
UPF2-203ENST00000397053 RGS3P49796 1198 aa9.23□□□□□ -0.93
UPF2-203ENST00000397053 L1TD1Q5T7N2 865 aaKnown RBP9.23□□□□□ -0.93
UPF2-203ENST00000397053 SAFB2Q14151 953 aaKnown RBP eCLIP9.23□□□□□ -0.93
UPF2-203ENST00000397053 CHAF1AQ13111 956 aaPredicted RBP9.22□□□□□ -0.93
UPF2-203ENST00000397053 SCRIBQ14160 1630 aa9.21□□□□□ -0.93
UPF2-203ENST00000397053 HSP90AB1P08238 724 aaKnown RBP9.21□□□□□ -0.94
UPF2-203ENST00000397053 GGT6Q6P531 493 aa9.21□□□□□ -0.94
UPF2-203ENST00000397053 KRI1Q8N9T8 703 aaKnown RBP9.2□□□□□ -0.94
UPF2-203ENST00000397053 GTF2E1P29083 439 aaPredicted RBP9.2□□□□□ -0.94
UPF2-203ENST00000397053 MCCP23508 829 aa9.19□□□□□ -0.94
UPF2-203ENST00000397053 KIAA2012Q0VF49 1180 aa9.19□□□□□ -0.94
UPF2-203ENST00000397053 GORABQ5T7V8 394 aa9.19□□□□□ -0.94
UPF2-203ENST00000397053 KANK1Q14678 1352 aa9.18□□□□□ -0.94
UPF2-203ENST00000397053 STK26Q9P289 416 aa9.18□□□□□ -0.94
UPF2-203ENST00000397053 TAF7LQ5H9L4 462 aa9.18□□□□□ -0.94
UPF2-203ENST00000397053 CC2D1BQ5T0F9 858 aaKnown RBP9.17□□□□□ -0.94
UPF2-203ENST00000397053 KIAA1211Q6ZU35 1233 aa9.17□□□□□ -0.94
UPF2-203ENST00000397053 CHMP4AQ9BY43 222 aa9.17□□□□□ -0.94
UPF2-203ENST00000397053 MORC1Q86VD1 984 aa9.16□□□□□ -0.94
UPF2-203ENST00000397053 ERCC6Q03468 1493 aa9.16□□□□□ -0.94
UPF2-203ENST00000397053 FRAT2O75474 233 aaPredicted RBP9.16□□□□□ -0.94
UPF2-203ENST00000397053 HDGFL2Q7Z4V5 671 aaPredicted RBP9.16□□□□□ -0.94
UPF2-203ENST00000397053 APBB1O00213 710 aa9.16□□□□□ -0.94
UPF2-203ENST00000397053 TMF1P82094 1093 aa9.16□□□□□ -0.94
UPF2-203ENST00000397053 ERICH6BQ5W0A0 696 aa9.16□□□□□ -0.94
UPF2-203ENST00000397053 AEBP2Q6ZN18 517 aaPredicted RBP9.16□□□□□ -0.94
UPF2-203ENST00000397053 CHMP3Q9Y3E7 222 aa9.15□□□□□ -0.94
UPF2-203ENST00000397053 PDE4CQ08493 712 aa9.15□□□□□ -0.95
UPF2-203ENST00000397053 NOC3LQ8WTT2 800 aaKnown RBP9.15□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms