RNA–Protein interactions for RNA: ENST00000394925.5

TRAF4-203, Transcript of TNF receptor associated factor 4, humanhuman

TSL 2

Gene TRAF4, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-203ENST00000394925 KIF13AQ9H1H9 1805 aa37.36■■■■□ 3.57
TRAF4-203ENST00000394925 NPM1P06748 294 aaKnown RBP eCLIP37.24■■■■□ 3.55
TRAF4-203ENST00000394925 IGF1RP08069 1367 aa37.21■■■■□ 3.55
TRAF4-203ENST00000394925 FAM69CQ0P6D2 419 aa37.19■■■■□ 3.54
TRAF4-203ENST00000394925 KIF27Q86VH2 1401 aa37.18■■■■□ 3.54
TRAF4-203ENST00000394925 KIAA0586Q9BVV6 1533 aa37.17■■■■□ 3.54
TRAF4-203ENST00000394925 ABCC10Q5T3U5 1492 aa37.15■■■■□ 3.54
TRAF4-203ENST00000394925 ADCY10Q96PN6 1610 aa37.14■■■■□ 3.54
TRAF4-203ENST00000394925 CUL7Q14999 1698 aa37.12■■■■□ 3.53
TRAF4-203ENST00000394925 MAPKBP1O60336 1514 aa37.11■■■■□ 3.53
TRAF4-203ENST00000394925 DIP2BQ9P265 1576 aa37.04■■■■□ 3.52
TRAF4-203ENST00000394925 CARMIL1Q5VZK9 1371 aa36.97■■■■□ 3.51
TRAF4-203ENST00000394925 TTBK1Q5TCY1 1321 aaPredicted RBP36.93■■■■□ 3.5
TRAF4-203ENST00000394925 PTPRGP23470 1445 aa36.93■■■■□ 3.5
TRAF4-203ENST00000394925 TSPOAP1O95153 1857 aa36.87■■■■□ 3.49
TRAF4-203ENST00000394925 CARMIL2Q6F5E8 1435 aa36.84■■■■□ 3.49
TRAF4-203ENST00000394925 KDM6BO15054 1643 aa36.82■■■■□ 3.49
TRAF4-203ENST00000394925 TNIKQ9UKE5 1360 aa36.81■■■■□ 3.48
TRAF4-203ENST00000394925 IQGAP2Q13576 1575 aa36.78■■■■□ 3.48
TRAF4-203ENST00000394925 ABCC2Q92887 1545 aa36.74■■■■□ 3.47
TRAF4-203ENST00000394925 ASXL2Q76L83 1435 aa36.67■■■■□ 3.46
TRAF4-203ENST00000394925 DISP1Q96F81 1524 aa36.63■■■■□ 3.45
TRAF4-203ENST00000394925 PLB1Q6P1J6 1458 aa36.62■■■■□ 3.45
TRAF4-203ENST00000394925 KDM4FA0A1W2PPD8 638 aa36.62■■■■□ 3.45
TRAF4-203ENST00000394925 UHRF1BP1LA0JNW5 1464 aa36.62■■■■□ 3.45
TRAF4-203ENST00000394925 UACAQ9BZF9 1416 aa36.61■■■■□ 3.45
TRAF4-203ENST00000394925 RAPGEF2Q9Y4G8 1499 aa36.58■■■■□ 3.45
TRAF4-203ENST00000394925 GLI2P10070 1586 aa36.56■■■■□ 3.44
TRAF4-203ENST00000394925 PPRC1Q5VV67 1664 aaKnown RBP36.53■■■■□ 3.44
TRAF4-203ENST00000394925 UGGT2Q9NYU1 1516 aa36.52■■■■□ 3.44
TRAF4-203ENST00000394925 KDM5BQ9UGL1 1544 aa36.47■■■■□ 3.43
TRAF4-203ENST00000394925 KIAA0556O60303 1618 aa36.45■■■■□ 3.42
TRAF4-203ENST00000394925 EPRSP07814 1512 aaKnown RBP36.43■■■■□ 3.42
TRAF4-203ENST00000394925 ZCCHC11Q5TAX3 1644 aaKnown RBP36.41■■■■□ 3.42
TRAF4-203ENST00000394925 MAP3K4Q9Y6R4 1608 aa36.36■■■■□ 3.41
TRAF4-203ENST00000394925 COL17A1Q9UMD9 1497 aaPredicted RBP36.32■■■■□ 3.41
TRAF4-203ENST00000394925 CTTNBP2Q8WZ74 1663 aa36.29■■■■□ 3.4
TRAF4-203ENST00000394925 TEX14Q8IWB6 1497 aa36.29■■■■□ 3.4
TRAF4-203ENST00000394925 ADGRL1O94910 1474 aa36.24■■■■□ 3.39
TRAF4-203ENST00000394925 WDR7Q9Y4E6 1490 aa36.24■■■■□ 3.39
TRAF4-203ENST00000394925 GOLGA3Q08378 1498 aa36.21■■■■□ 3.39
TRAF4-203ENST00000394925 KCNH8Q96L42 1107 aa36.13■■■■□ 3.37
TRAF4-203ENST00000394925 ABCA8O94911 1581 aa36.13■■■■□ 3.37
TRAF4-203ENST00000394925 PRXQ9BXM0 1461 aa36.11■■■■□ 3.37
TRAF4-203ENST00000394925 CD109Q6YHK3 1445 aa36.08■■■■□ 3.37
TRAF4-203ENST00000394925 CFAP43Q8NDM7 1665 aa36.04■■■■□ 3.36
TRAF4-203ENST00000394925 MAGI3Q5TCQ9 1506 aa36.03■■■■□ 3.36
TRAF4-203ENST00000394925 P3H3Q8IVL6 736 aa35.96■■■■□ 3.35
TRAF4-203ENST00000394925 ARID3CA6NKF2 412 aa35.95■■■■□ 3.35
TRAF4-203ENST00000394925 FAM9AQ8IZU1 332 aaPredicted RBP35.93■■■■□ 3.34
TRAF4-203ENST00000394925 ATP10BO94823 1461 aa35.86■■■■□ 3.33
TRAF4-203ENST00000394925 HECW2Q9P2P5 1572 aa35.83■■■■□ 3.33
TRAF4-203ENST00000394925 ILDR1Q86SU0 546 aaPredicted RBP35.82■■■■□ 3.32
TRAF4-203ENST00000394925 CSRNP3Q8WYN3 585 aa35.81■■■■□ 3.32
TRAF4-203ENST00000394925 ARAP3Q8WWN8 1544 aa35.75■■■■□ 3.31
TRAF4-203ENST00000394925 SAMD9Q5K651 1589 aa35.75■■■■□ 3.31
TRAF4-203ENST00000394925 KIF21BO75037 1637 aa35.75■■■■□ 3.31
TRAF4-203ENST00000394925 ABCA9Q8IUA7 1624 aa35.71■■■■□ 3.31
TRAF4-203ENST00000394925 RAPGEF6Q8TEU7 1601 aa35.7■■■■□ 3.31
TRAF4-203ENST00000394925 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35.68■■■■□ 3.3
TRAF4-203ENST00000394925 HNRNPUL2Q1KMD3 747 aaKnown RBP35.68■■■■□ 3.3
TRAF4-203ENST00000394925 RANGAP1P46060 587 aaPredicted RBP35.65■■■■□ 3.3
TRAF4-203ENST00000394925 PHLDB1Q86UU1 1377 aa35.64■■■■□ 3.3
TRAF4-203ENST00000394925 RAPGEF3O95398 923 aa35.6■■■■□ 3.29
TRAF4-203ENST00000394925 NUP153P49790 1475 aaKnown RBP35.56■■■■□ 3.28
TRAF4-203ENST00000394925 NEO1Q92859 1461 aa35.56■■■■□ 3.28
TRAF4-203ENST00000394925 FHOD3Q2V2M9 1422 aa35.55■■■■□ 3.28
TRAF4-203ENST00000394925 EEA1Q15075 1411 aa35.54■■■■□ 3.28
TRAF4-203ENST00000394925 ADAMTSL3P82987 1691 aa35.46■■■■□ 3.27
TRAF4-203ENST00000394925 FRMPD1Q5SYB0 1578 aa35.45■■■■□ 3.27
TRAF4-203ENST00000394925 PLEKHD1A6NEE1 506 aa35.44■■■■□ 3.26
TRAF4-203ENST00000394925 PTPRMP28827 1452 aa35.43■■■■□ 3.26
TRAF4-203ENST00000394925 ARID4BQ4LE39 1312 aaPredicted RBP35.41■■■■□ 3.26
TRAF4-203ENST00000394925 BCORL1Q5H9F3 1711 aa35.36■■■■□ 3.25
TRAF4-203ENST00000394925 DENND4BO75064 1496 aaPredicted RBP35.33■■■■□ 3.25
TRAF4-203ENST00000394925 AKNAQ7Z591 1439 aa35.32■■■■□ 3.25
TRAF4-203ENST00000394925 EFCAB5A4FU69 1503 aa35.32■■■■□ 3.25
TRAF4-203ENST00000394925 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP35.31■■■■□ 3.242e-6■■■□□ 16.3
TRAF4-203ENST00000394925 MADDQ8WXG6 1647 aa35.3■■■■□ 3.24
TRAF4-203ENST00000394925 FANCAO15360 1455 aa35.29■■■■□ 3.24
TRAF4-203ENST00000394925 RICTORQ6R327 1708 aa35.29■■■■□ 3.24
TRAF4-203ENST00000394925 ARHGEF40Q8TER5 1519 aa35.27■■■■□ 3.24
TRAF4-203ENST00000394925 CFAP74Q9C0B2 1584 aa35.26■■■■□ 3.24
TRAF4-203ENST00000394925 TTC37Q6PGP7 1564 aa35.25■■■■□ 3.23
TRAF4-203ENST00000394925 CDK13Q14004 1512 aaKnown RBP35.22■■■■□ 3.23
TRAF4-203ENST00000394925 EHMT2Q96KQ7 1210 aa35.19■■■■□ 3.22
TRAF4-203ENST00000394925 RIMS1Q86UR5 1692 aaKnown RBP35.17■■■■□ 3.22
TRAF4-203ENST00000394925 PCF11O94913 1555 aaKnown RBP35.16■■■■□ 3.22
TRAF4-203ENST00000394925 ZMYM4Q5VZL5 1548 aa35.14■■■■□ 3.22
TRAF4-203ENST00000394925 UBTFP17480 764 aaKnown RBP35.13■■■■□ 3.21
TRAF4-203ENST00000394925 ATP1B4Q9UN42 357 aaPredicted RBP35.13■■■■□ 3.21
TRAF4-203ENST00000394925 YEATS2Q9ULM3 1422 aa35.12■■■■□ 3.21
TRAF4-203ENST00000394925 ZFYVE16Q7Z3T8 1539 aa35.11■■■■□ 3.21
TRAF4-203ENST00000394925 LMTK3Q96Q04 1460 aa35.11■■■■□ 3.21
TRAF4-203ENST00000394925 FBXO41Q8TF61 875 aa35.11■■■■□ 3.21
TRAF4-203ENST00000394925 POGZQ7Z3K3 1410 aa35.09■■■■□ 3.21
TRAF4-203ENST00000394925 PLPPR3Q6T4P5 718 aa35.09■■■■□ 3.21
TRAF4-203ENST00000394925 PLCH2O75038 1416 aa35.07■■■■□ 3.21
TRAF4-203ENST00000394925 SCAPERQ9BY12 1400 aa35.06■■■■□ 3.2
TRAF4-203ENST00000394925 HECW1Q76N89 1606 aa35.06■■■■□ 3.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms