RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ERCC6Q03468 1493 aa16.52■□□□□ 0.24
TCOF1-203ENST00000394269 KIF21AQ7Z4S6 1674 aa16.52■□□□□ 0.24
TCOF1-203ENST00000394269 CCNB3Q8WWL7 1395 aa16.48■□□□□ 0.23
TCOF1-203ENST00000394269 FHAD1B1AJZ9 1412 aa16.47■□□□□ 0.23
TCOF1-203ENST00000394269 MRC2Q9UBG0 1479 aa16.44■□□□□ 0.22
TCOF1-203ENST00000394269 DIEXFQ68CQ4 756 aaKnown RBP16.44■□□□□ 0.22
TCOF1-203ENST00000394269 ZNF608Q9ULD9 1512 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-203ENST00000394269 CHMP7Q8WUX9 453 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-203ENST00000394269 PHLDB1Q86UU1 1377 aa16.41■□□□□ 0.22
TCOF1-203ENST00000394269 MTUS2Q5JR59 1369 aa16.4■□□□□ 0.22
TCOF1-203ENST00000394269 LRRC9Q6ZRR7 1453 aa16.38■□□□□ 0.21
TCOF1-203ENST00000394269 ZNF316A6NFI3 1004 aaPredicted RBP16.36■□□□□ 0.21
TCOF1-203ENST00000394269 CUL7Q14999 1698 aa16.36■□□□□ 0.21
TCOF1-203ENST00000394269 FMN1Q68DA7 1419 aa16.35■□□□□ 0.21
TCOF1-203ENST00000394269 RRBP1Q9P2E9 1410 aaKnown RBP16.35■□□□□ 0.21
TCOF1-203ENST00000394269 TIAM1Q13009 1591 aa16.35■□□□□ 0.21
TCOF1-203ENST00000394269 PCF11O94913 1555 aaKnown RBP16.34■□□□□ 0.21
TCOF1-203ENST00000394269 NEUROD1Q13562 356 aa16.34■□□□□ 0.21
TCOF1-203ENST00000394269 ABCA5Q8WWZ7 1642 aa16.33■□□□□ 0.21
TCOF1-203ENST00000394269 DHX57Q6P158 1386 aaKnown RBP16.32■□□□□ 0.2
TCOF1-203ENST00000394269 TARBP1Q13395 1621 aaKnown RBP16.32■□□□□ 0.2
TCOF1-203ENST00000394269 GRIN2BQ13224 1484 aa16.31■□□□□ 0.2
TCOF1-203ENST00000394269 CASKIN1Q8WXD9 1431 aa16.31■□□□□ 0.2
TCOF1-203ENST00000394269 CHIC2Q9UKJ5 165 aa16.31■□□□□ 0.2
TCOF1-203ENST00000394269 RAB3GAP2Q9H2M9 1393 aa16.3■□□□□ 0.2
TCOF1-203ENST00000394269 IFT140Q96RY7 1462 aa16.28■□□□□ 0.2
TCOF1-203ENST00000394269 WDR97A6NE52 1622 aa16.27■□□□□ 0.2
TCOF1-203ENST00000394269 EFCAB5A4FU69 1503 aa16.27■□□□□ 0.19
TCOF1-203ENST00000394269 SNAPC4Q5SXM2 1469 aa16.26■□□□□ 0.19
TCOF1-203ENST00000394269 FYCO1Q9BQS8 1478 aa16.26■□□□□ 0.19
TCOF1-203ENST00000394269 SIN3AQ96ST3 1273 aa16.25■□□□□ 0.19
TCOF1-203ENST00000394269 CTTNBP2Q8WZ74 1663 aa16.23■□□□□ 0.19
TCOF1-203ENST00000394269 YTHDC1Q96MU7 727 aaKnown RBP16.23■□□□□ 0.19
TCOF1-203ENST00000394269 RRP7BPQ9NSQ0 103 aa16.23■□□□□ 0.19
TCOF1-203ENST00000394269 SETD5Q9C0A6 1442 aa16.21■□□□□ 0.19
TCOF1-203ENST00000394269 MAP3K1Q13233 1512 aa16.2■□□□□ 0.18
TCOF1-203ENST00000394269 JPH4Q96JJ6 628 aa16.19■□□□□ 0.18
TCOF1-203ENST00000394269 WDR62O43379 1518 aa16.19■□□□□ 0.18
TCOF1-203ENST00000394269 ZNF777Q9ULD5 760 aaPredicted RBP16.17■□□□□ 0.18
TCOF1-203ENST00000394269 PBRM1Q86U86 1689 aa16.16■□□□□ 0.18
TCOF1-203ENST00000394269 IQGAP2Q13576 1575 aa16.16■□□□□ 0.18
TCOF1-203ENST00000394269 TRIM52Q96A61 297 aa16.16■□□□□ 0.18
TCOF1-203ENST00000394269 FGD6Q6ZV73 1430 aa16.15■□□□□ 0.18
TCOF1-203ENST00000394269 ADAMTS12P58397 1594 aa16.15■□□□□ 0.18
TCOF1-203ENST00000394269 CLSPNQ9HAW4 1339 aa16.14■□□□□ 0.18
TCOF1-203ENST00000394269 MIER1Q8N108 512 aa16.14■□□□□ 0.17
TCOF1-203ENST00000394269 NCOA2Q15596 1464 aa16.14■□□□□ 0.17
TCOF1-203ENST00000394269 CDK13Q14004 1512 aaKnown RBP16.13■□□□□ 0.17
TCOF1-203ENST00000394269 GRIN2AQ12879 1464 aa16.12■□□□□ 0.17
TCOF1-203ENST00000394269 CDK11AQ9UQ88 783 aaPredicted RBP16.12■□□□□ 0.17
TCOF1-203ENST00000394269 SAMD9Q5K651 1589 aa16.11■□□□□ 0.17
TCOF1-203ENST00000394269 EIF4G3O43432 1585 aaKnown RBP16.11■□□□□ 0.17
TCOF1-203ENST00000394269 HIRIP3Q9BW71 556 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-203ENST00000394269 KIAA0586Q9BVV6 1533 aa16.11■□□□□ 0.17
TCOF1-203ENST00000394269 ZNF644Q9H582 1327 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-203ENST00000394269 SCAF1Q9H7N4 1312 aaKnown RBP16.09■□□□□ 0.17
TCOF1-203ENST00000394269 MYOM3Q5VTT5 1437 aa16.08■□□□□ 0.17
TCOF1-203ENST00000394269 CFAP43Q8NDM7 1665 aa16.08■□□□□ 0.17
TCOF1-203ENST00000394269 EPRSP07814 1512 aaKnown RBP16.08■□□□□ 0.16
TCOF1-203ENST00000394269 PTPRKQ15262 1439 aa16.07■□□□□ 0.16
TCOF1-203ENST00000394269 SYNJ2O15056 1496 aa16.04■□□□□ 0.16
TCOF1-203ENST00000394269 MAGI3Q5TCQ9 1506 aa16.04■□□□□ 0.16
TCOF1-203ENST00000394269 CFDP1Q9UEE9 299 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-203ENST00000394269 THOC2Q8NI27 1593 aaKnown RBP16.03■□□□□ 0.16
TCOF1-203ENST00000394269 DISP1Q96F81 1524 aa16.03■□□□□ 0.16
TCOF1-203ENST00000394269 FOXD1Q16676 465 aa16.03■□□□□ 0.16
TCOF1-203ENST00000394269 PLB1Q6P1J6 1458 aa16.03■□□□□ 0.16
TCOF1-203ENST00000394269 MAGI1Q96QZ7 1491 aaPredicted RBP16.02■□□□□ 0.16
TCOF1-203ENST00000394269 PLEKHD1A6NEE1 506 aa16.01■□□□□ 0.15
TCOF1-203ENST00000394269 CCDC18Q5T9S5 1454 aa16.01■□□□□ 0.15
TCOF1-203ENST00000394269 CARMIL2Q6F5E8 1435 aa16.01■□□□□ 0.15
TCOF1-203ENST00000394269 PRG4Q92954 1404 aaPredicted RBP16■□□□□ 0.15
TCOF1-203ENST00000394269 UGGT2Q9NYU1 1516 aa16■□□□□ 0.15
TCOF1-203ENST00000394269 CENPBP07199 599 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-203ENST00000394269 EHBP1L1Q8N3D4 1523 aa15.99■□□□□ 0.15
TCOF1-203ENST00000394269 HECW1Q76N89 1606 aa15.98■□□□□ 0.15
TCOF1-203ENST00000394269 LRRIQ1Q96JM4 1722 aa15.98■□□□□ 0.15
TCOF1-203ENST00000394269 MAPKBP1O60336 1514 aa15.97■□□□□ 0.15
TCOF1-203ENST00000394269 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.97■□□□□ 0.15
TCOF1-203ENST00000394269 SUPT6HQ7KZ85 1726 aaKnown RBP15.96■□□□□ 0.15
TCOF1-203ENST00000394269 NUP153P49790 1475 aaKnown RBP15.96■□□□□ 0.15
TCOF1-203ENST00000394269 CEP170Q5SW79 1584 aa15.96■□□□□ 0.15
TCOF1-203ENST00000394269 TONSLQ96HA7 1378 aa15.96■□□□□ 0.15
TCOF1-203ENST00000394269 KIAA0556O60303 1618 aa15.95■□□□□ 0.14
TCOF1-203ENST00000394269 NAIPQ13075 1403 aa15.94■□□□□ 0.14
TCOF1-203ENST00000394269 KCNH8Q96L42 1107 aa15.94■□□□□ 0.14
TCOF1-203ENST00000394269 ACIN1Q9UKV3 1341 aaKnown RBP15.94■□□□□ 0.14
TCOF1-203ENST00000394269 DDX10Q13206 875 aaKnown RBP15.94■□□□□ 0.14
TCOF1-203ENST00000394269 HFM1A2PYH4 1435 aa15.92■□□□□ 0.14
TCOF1-203ENST00000394269 PTPN23Q9H3S7 1636 aa15.92■□□□□ 0.14
TCOF1-203ENST00000394269 PTPRGP23470 1445 aa15.91■□□□□ 0.14
TCOF1-203ENST00000394269 PPP1R15AO75807 674 aaPredicted RBP15.91■□□□□ 0.14
TCOF1-203ENST00000394269 MPHOSPH9Q99550 1183 aa15.9■□□□□ 0.14
TCOF1-203ENST00000394269 SLC4A1APQ9BWU0 796 aaKnown RBP15.89■□□□□ 0.13
TCOF1-203ENST00000394269 NUP160Q12769 1436 aa15.89■□□□□ 0.13
TCOF1-203ENST00000394269 UACAQ9BZF9 1416 aa15.87■□□□□ 0.13
TCOF1-203ENST00000394269 HNRNPMP52272 730 aaKnown RBP eCLIP15.87■□□□□ 0.13
TCOF1-203ENST00000394269 RAPGEF6Q8TEU7 1601 aa15.86■□□□□ 0.13
TCOF1-203ENST00000394269 GTF3C3Q9Y5Q9 886 aa15.85■□□□□ 0.13
TCOF1-203ENST00000394269 TROQ12816 1431 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 354.2 ms