RNA–Protein interactions for RNA: ENST00000393454.6

TDP1-203, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TDP1, Length 2,068 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-203ENST00000393454 SNAPC4Q5SXM2 1469 aa13.47□□□□□ -0.25
TDP1-203ENST00000393454 ARAP1Q96P48 1450 aa13.47□□□□□ -0.25
TDP1-203ENST00000393454 ARHGAP35Q9NRY4 1499 aa13.47□□□□□ -0.25
TDP1-203ENST00000393454 TTBK1Q5TCY1 1321 aaPredicted RBP13.46□□□□□ -0.26
TDP1-203ENST00000393454 APLP2Q06481 763 aa13.45□□□□□ -0.26
TDP1-203ENST00000393454 P3H3Q8IVL6 736 aa13.44□□□□□ -0.26
TDP1-203ENST00000393454 MAGI1Q96QZ7 1491 aaPredicted RBP13.42□□□□□ -0.26
TDP1-203ENST00000393454 FBLN2P98095 1184 aa13.41□□□□□ -0.26
TDP1-203ENST00000393454 CHMP7Q8WUX9 453 aaPredicted RBP13.41□□□□□ -0.26
TDP1-203ENST00000393454 GRIN2AQ12879 1464 aa13.38□□□□□ -0.27
TDP1-203ENST00000393454 EFCAB5A4FU69 1503 aa13.38□□□□□ -0.27
TDP1-203ENST00000393454 SYNJ2O15056 1496 aa13.37□□□□□ -0.27
TDP1-203ENST00000393454 FHOD3Q2V2M9 1422 aa13.37□□□□□ -0.27
TDP1-203ENST00000393454 IQGAP2Q13576 1575 aa13.36□□□□□ -0.27
TDP1-203ENST00000393454 ATP1B4Q9UN42 357 aaPredicted RBP13.33□□□□□ -0.27
TDP1-203ENST00000393454 SAMD9Q5K651 1589 aa13.32□□□□□ -0.28
TDP1-203ENST00000393454 KIAA0586Q9BVV6 1533 aa13.32□□□□□ -0.28
TDP1-203ENST00000393454 CEP170Q5SW79 1584 aa13.29□□□□□ -0.28
TDP1-203ENST00000393454 FMN1Q68DA7 1419 aa13.29□□□□□ -0.28
TDP1-203ENST00000393454 PCF11O94913 1555 aaKnown RBP13.28□□□□□ -0.28
TDP1-203ENST00000393454 UGGT2Q9NYU1 1516 aa13.27□□□□□ -0.29
TDP1-203ENST00000393454 KANK4Q5T7N3 995 aaPredicted RBP13.27□□□□□ -0.29
TDP1-203ENST00000393454 NUP160Q12769 1436 aa13.26□□□□□ -0.29
TDP1-203ENST00000393454 CASKIN1Q8WXD9 1431 aa13.25□□□□□ -0.29
TDP1-203ENST00000393454 CHD1O14646 1710 aa13.25□□□□□ -0.29
TDP1-203ENST00000393454 FYCO1Q9BQS8 1478 aa13.25□□□□□ -0.29
TDP1-203ENST00000393454 TIAM1Q13009 1591 aa13.23□□□□□ -0.29
TDP1-203ENST00000393454 JPH4Q96JJ6 628 aa13.22□□□□□ -0.29
TDP1-203ENST00000393454 MAP3K1Q13233 1512 aa13.21□□□□□ -0.29
TDP1-203ENST00000393454 KIAA0556O60303 1618 aa13.21□□□□□ -0.29
TDP1-203ENST00000393454 DISP1Q96F81 1524 aa13.21□□□□□ -0.3
TDP1-203ENST00000393454 AEBP2Q6ZN18 517 aaPredicted RBP13.2□□□□□ -0.3
TDP1-203ENST00000393454 CFAP43Q8NDM7 1665 aa13.19□□□□□ -0.3
TDP1-203ENST00000393454 CARMIL2Q6F5E8 1435 aa13.18□□□□□ -0.3
TDP1-203ENST00000393454 LRRC9Q6ZRR7 1453 aa13.18□□□□□ -0.3
TDP1-203ENST00000393454 LRRIQ1Q96JM4 1722 aa13.15□□□□□ -0.3
TDP1-203ENST00000393454 HECW1Q76N89 1606 aa13.14□□□□□ -0.31
TDP1-203ENST00000393454 ARID3CA6NKF2 412 aa13.13□□□□□ -0.31
TDP1-203ENST00000393454 PRG4Q92954 1404 aaPredicted RBP13.12□□□□□ -0.31
TDP1-203ENST00000393454 HNRNPUL2Q1KMD3 747 aaKnown RBP13.12□□□□□ -0.31
TDP1-203ENST00000393454 MTUS2Q5JR59 1369 aa13.12□□□□□ -0.31
TDP1-203ENST00000393454 CCDC18Q5T9S5 1454 aa13.11□□□□□ -0.31
TDP1-203ENST00000393454 RAPGEF6Q8TEU7 1601 aa13.1□□□□□ -0.31
TDP1-203ENST00000393454 EPRSP07814 1512 aaKnown RBP13.09□□□□□ -0.31
TDP1-203ENST00000393454 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.09□□□□□ -0.31
TDP1-203ENST00000393454 HRCP23327 699 aa13.09□□□□□ -0.31
TDP1-203ENST00000393454 CDK13Q14004 1512 aaKnown RBP13.07□□□□□ -0.32
TDP1-203ENST00000393454 RRBP1Q9P2E9 1410 aaKnown RBP13.07□□□□□ -0.32
TDP1-203ENST00000393454 PLB1Q6P1J6 1458 aa13.07□□□□□ -0.32
TDP1-203ENST00000393454 SHROOM2Q13796 1616 aa13.07□□□□□ -0.32
TDP1-203ENST00000393454 PHLDB1Q86UU1 1377 aa13.06□□□□□ -0.32
TDP1-203ENST00000393454 CCNB3Q8WWL7 1395 aa13.06□□□□□ -0.32
TDP1-203ENST00000393454 NUP153P49790 1475 aaKnown RBP13.06□□□□□ -0.32
TDP1-203ENST00000393454 CLASP1Q7Z460 1538 aa13.05□□□□□ -0.32
TDP1-203ENST00000393454 PTPRGP23470 1445 aa13.05□□□□□ -0.32
TDP1-203ENST00000393454 EHBP1L1Q8N3D4 1523 aa13.05□□□□□ -0.32
TDP1-203ENST00000393454 SUPT6HQ7KZ85 1726 aaKnown RBP13.04□□□□□ -0.32
TDP1-203ENST00000393454 MAGI3Q5TCQ9 1506 aa13.03□□□□□ -0.32
TDP1-203ENST00000393454 ITGAEP38570 1179 aa13.03□□□□□ -0.32
TDP1-203ENST00000393454 FAM50AQ14320 339 aaKnown RBP13.03□□□□□ -0.32
TDP1-203ENST00000393454 CDK11AQ9UQ88 783 aaPredicted RBP13.02□□□□□ -0.33
TDP1-203ENST00000393454 NCOA2Q15596 1464 aa13.02□□□□□ -0.33
TDP1-203ENST00000393454 ERCC6L2Q5T890 1561 aa13.02□□□□□ -0.33
TDP1-203ENST00000393454 ABCA8O94911 1581 aa13.01□□□□□ -0.33
TDP1-203ENST00000393454 CCER1Q8TC90 406 aaPredicted RBP13□□□□□ -0.33
TDP1-203ENST00000393454 OSCARQ8IYS5 282 aa12.99□□□□□ -0.33
TDP1-203ENST00000393454 MYOM3Q5VTT5 1437 aa12.96□□□□□ -0.33
TDP1-203ENST00000393454 FGD6Q6ZV73 1430 aa12.96□□□□□ -0.33
TDP1-203ENST00000393454 UACAQ9BZF9 1416 aa12.96□□□□□ -0.34
TDP1-203ENST00000393454 ATP10BO94823 1461 aa12.95□□□□□ -0.34
TDP1-203ENST00000393454 ZEB1P37275 1124 aaPredicted RBP12.95□□□□□ -0.34
TDP1-203ENST00000393454 ARHGEF11O15085 1522 aa12.95□□□□□ -0.34
TDP1-203ENST00000393454 PLEKHD1A6NEE1 506 aa12.94□□□□□ -0.34
TDP1-203ENST00000393454 TROQ12816 1431 aaPredicted RBP12.94□□□□□ -0.34
TDP1-203ENST00000393454 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.92□□□□□ -0.34
TDP1-203ENST00000393454 PTPN23Q9H3S7 1636 aa12.91□□□□□ -0.34
TDP1-203ENST00000393454 ABCC2Q92887 1545 aa12.9□□□□□ -0.34
TDP1-203ENST00000393454 KIF14Q15058 1648 aa12.88□□□□□ -0.35
TDP1-203ENST00000393454 ADCY10Q96PN6 1610 aa12.88□□□□□ -0.35
TDP1-203ENST00000393454 MIA2Q96PC5 1412 aa12.87□□□□□ -0.35
TDP1-203ENST00000393454 UHRF1BP1LA0JNW5 1464 aa12.85□□□□□ -0.35
TDP1-203ENST00000393454 TCOF1Q13428 1488 aaKnown RBP12.85□□□□□ -0.35
TDP1-203ENST00000393454 CFDP1Q9UEE9 299 aaPredicted RBP12.85□□□□□ -0.35
TDP1-203ENST00000393454 ITSN2Q9NZM3 1697 aa12.84□□□□□ -0.35
TDP1-203ENST00000393454 SETD5Q9C0A6 1442 aa12.84□□□□□ -0.35
TDP1-203ENST00000393454 ZNF777Q9ULD5 760 aaPredicted RBP12.83□□□□□ -0.36
TDP1-203ENST00000393454 ZCCHC11Q5TAX3 1644 aaKnown RBP12.83□□□□□ -0.36
TDP1-203ENST00000393454 GPATCH8Q9UKJ3 1502 aaKnown RBP12.83□□□□□ -0.36
TDP1-203ENST00000393454 RAB3GAP2Q9H2M9 1393 aa12.82□□□□□ -0.36
TDP1-203ENST00000393454 ZNF644Q9H582 1327 aaPredicted RBP12.82□□□□□ -0.36
TDP1-203ENST00000393454 KCNH8Q96L42 1107 aa12.82□□□□□ -0.36
TDP1-203ENST00000393454 PTPRKQ15262 1439 aa12.82□□□□□ -0.36
TDP1-203ENST00000393454 KDM5BQ9UGL1 1544 aa12.81□□□□□ -0.36
TDP1-203ENST00000393454 ABCC10Q5T3U5 1492 aa12.81□□□□□ -0.36
TDP1-203ENST00000393454 CHIC2Q9UKJ5 165 aa12.81□□□□□ -0.36
TDP1-203ENST00000393454 DNAJC5Q9H3Z4 198 aa12.8□□□□□ -0.36
TDP1-203ENST00000393454 CDC42BPAQ5VT25 1732 aa12.79□□□□□ -0.36
TDP1-203ENST00000393454 CAMSAP2Q08AD1 1489 aa12.78□□□□□ -0.36
TDP1-203ENST00000393454 DHX57Q6P158 1386 aaKnown RBP12.77□□□□□ -0.36
TDP1-203ENST00000393454 RRP7BPQ9NSQ0 103 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms