RNA–Protein interactions for RNA: ENST00000389328.8

TRAPPC9-201, Transcript of trafficking protein particle complex 9, humanhuman

TSL 2 BASIC

Gene TRAPPC9, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC9-201ENST00000389328 EIF4G2P78344 907 aaKnown RBP eCLIP17.82■□□□□ 0.446e-7■■■■■ 53.7
TRAPPC9-201ENST00000389328 B4GALNT3Q6L9W6 998 aa17.81■□□□□ 0.44
TRAPPC9-201ENST00000389328 RRP7BPQ9NSQ0 103 aa17.8■□□□□ 0.44
TRAPPC9-201ENST00000389328 RUSC2Q8N2Y8 1516 aa17.8■□□□□ 0.44
TRAPPC9-201ENST00000389328 TMC1Q8TDI8 760 aa17.79■□□□□ 0.44
TRAPPC9-201ENST00000389328 WIZO95785 1651 aa17.79■□□□□ 0.44
TRAPPC9-201ENST00000389328 SLC4A1APQ9BWU0 796 aaKnown RBP17.78■□□□□ 0.44
TRAPPC9-201ENST00000389328 PPP4R2Q9NY27 417 aa17.78■□□□□ 0.44
TRAPPC9-201ENST00000389328 NACADO15069 1562 aa17.76■□□□□ 0.43
TRAPPC9-201ENST00000389328 MTUS2Q5JR59 1369 aa17.76■□□□□ 0.43
TRAPPC9-201ENST00000389328 ZNF777Q9ULD5 760 aaPredicted RBP17.76■□□□□ 0.43
TRAPPC9-201ENST00000389328 DHX57Q6P158 1386 aaKnown RBP17.75■□□□□ 0.43
TRAPPC9-201ENST00000389328 CCER2I3L3R5 266 aa17.74■□□□□ 0.43
TRAPPC9-201ENST00000389328 RAB3GAP2Q9H2M9 1393 aa17.7■□□□□ 0.42
TRAPPC9-201ENST00000389328 DEKP35659 375 aaKnown RBP17.7■□□□□ 0.42
TRAPPC9-201ENST00000389328 NOP58Q9Y2X3 529 aaKnown RBP17.7■□□□□ 0.42
TRAPPC9-201ENST00000389328 RTN4Q9NQC3 1192 aaKnown RBP17.67■□□□□ 0.42
TRAPPC9-201ENST00000389328 KIF27Q86VH2 1401 aa17.67■□□□□ 0.42
TRAPPC9-201ENST00000389328 SETD5Q9C0A6 1442 aa17.65■□□□□ 0.42
TRAPPC9-201ENST00000389328 CANXP27824 592 aaKnown RBP17.64■□□□□ 0.41
TRAPPC9-201ENST00000389328 TIMELESSQ9UNS1 1208 aa17.62■□□□□ 0.41
TRAPPC9-201ENST00000389328 KDM2AQ9Y2K7 1162 aa17.62■□□□□ 0.41
TRAPPC9-201ENST00000389328 LAS1LQ9Y4W2 734 aaKnown RBP17.61■□□□□ 0.41
TRAPPC9-201ENST00000389328 RAPGEF2Q9Y4G8 1499 aa17.61■□□□□ 0.41
TRAPPC9-201ENST00000389328 PPP1R15AO75807 674 aaPredicted RBP17.61■□□□□ 0.41
TRAPPC9-201ENST00000389328 BAZ1BQ9UIG0 1483 aaKnown RBP17.6■□□□□ 0.41
TRAPPC9-201ENST00000389328 FBLN2P98095 1184 aa17.58■□□□□ 0.4
TRAPPC9-201ENST00000389328 HSPA5P11021 654 aaKnown RBP17.56■□□□□ 0.4
TRAPPC9-201ENST00000389328 ARXQ96QS3 562 aa17.55■□□□□ 0.4
TRAPPC9-201ENST00000389328 NEFMP07197 916 aa17.53■□□□□ 0.4
TRAPPC9-201ENST00000389328 TOP2AP11388 1531 aaKnown RBP17.53■□□□□ 0.4
TRAPPC9-201ENST00000389328 FOXD1Q16676 465 aa17.45■□□□□ 0.38
TRAPPC9-201ENST00000389328 ERICH6BQ5W0A0 696 aa17.44■□□□□ 0.38
TRAPPC9-201ENST00000389328 CARMIL1Q5VZK9 1371 aa17.44■□□□□ 0.38
TRAPPC9-201ENST00000389328 FHAD1B1AJZ9 1412 aa17.42■□□□□ 0.38
TRAPPC9-201ENST00000389328 PPM1GO15355 546 aaPredicted RBP17.42■□□□□ 0.38
TRAPPC9-201ENST00000389328 DDRGK1Q96HY6 314 aa17.42■□□□□ 0.38
TRAPPC9-201ENST00000389328 CUX2O14529 1486 aa17.4■□□□□ 0.38
TRAPPC9-201ENST00000389328 WDR43Q15061 677 aaKnown RBP eCLIP17.4■□□□□ 0.38
TRAPPC9-201ENST00000389328 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.4■□□□□ 0.385e-6■■■■□ 19.5
TRAPPC9-201ENST00000389328 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.39■□□□□ 0.37
TRAPPC9-201ENST00000389328 UPF2Q9HAU5 1272 aaKnown RBP17.39■□□□□ 0.37
TRAPPC9-201ENST00000389328 CARD11Q9BXL7 1154 aa17.39■□□□□ 0.37
TRAPPC9-201ENST00000389328 FANCIQ9NVI1 1328 aa17.38■□□□□ 0.37
TRAPPC9-201ENST00000389328 ARHGAP35Q9NRY4 1499 aa17.36■□□□□ 0.37
TRAPPC9-201ENST00000389328 RGL3Q3MIN7 710 aa17.35■□□□□ 0.37
TRAPPC9-201ENST00000389328 IPO9Q96P70 1041 aaKnown RBP17.34■□□□□ 0.37
TRAPPC9-201ENST00000389328 RGS3P49796 1198 aa17.33■□□□□ 0.37
TRAPPC9-201ENST00000389328 TSPY4P0CV99 314 aa17.33■□□□□ 0.36
TRAPPC9-201ENST00000389328 TSPY10P0CW01 314 aa17.33■□□□□ 0.36
TRAPPC9-201ENST00000389328 L3MBTL2Q969R5 705 aa17.32■□□□□ 0.36
TRAPPC9-201ENST00000389328 KIF21BO75037 1637 aa17.31■□□□□ 0.36
TRAPPC9-201ENST00000389328 SMARCA2P51531 1590 aa17.3■□□□□ 0.36
TRAPPC9-201ENST00000389328 HSP90AA1P07900 732 aaKnown RBP17.29■□□□□ 0.36
TRAPPC9-201ENST00000389328 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.29■□□□□ 0.36
TRAPPC9-201ENST00000389328 MPHOSPH9Q99550 1183 aa17.28■□□□□ 0.36
TRAPPC9-201ENST00000389328 NUDCQ9Y266 331 aa17.27■□□□□ 0.36
TRAPPC9-201ENST00000389328 SMARCA4P51532 1647 aa17.27■□□□□ 0.36
TRAPPC9-201ENST00000389328 PRKRIP1Q9H875 184 aaPredicted RBP17.27■□□□□ 0.35
TRAPPC9-201ENST00000389328 CC2D1BQ5T0F9 858 aaKnown RBP17.26■□□□□ 0.35
TRAPPC9-201ENST00000389328 CFDP1Q9UEE9 299 aaPredicted RBP17.26■□□□□ 0.35
TRAPPC9-201ENST00000389328 GLIPR1L2Q4G1C9 344 aa17.24■□□□□ 0.35
TRAPPC9-201ENST00000389328 RCAN3Q9UKA8 241 aa17.23■□□□□ 0.35
TRAPPC9-201ENST00000389328 FHOD3Q2V2M9 1422 aa17.22■□□□□ 0.35
TRAPPC9-201ENST00000389328 BECN1Q14457 450 aa17.21■□□□□ 0.35
TRAPPC9-201ENST00000389328 TCERG1O14776 1098 aaKnown RBP17.2■□□□□ 0.34
TRAPPC9-201ENST00000389328 MSH5O43196 834 aa17.19■□□□□ 0.34
TRAPPC9-201ENST00000389328 DCAF11Q8TEB1 546 aa17.19■□□□□ 0.34
TRAPPC9-201ENST00000389328 ZBED9Q6R2W3 1325 aa17.19■□□□□ 0.34
TRAPPC9-201ENST00000389328 FMN1Q68DA7 1419 aa17.19■□□□□ 0.34
TRAPPC9-201ENST00000389328 ANP32BQ92688 251 aaKnown RBP17.19■□□□□ 0.34
TRAPPC9-201ENST00000389328 PHLDB1Q86UU1 1377 aa17.18■□□□□ 0.34
TRAPPC9-201ENST00000389328 CHGAP10645 457 aaKnown RBP17.17■□□□□ 0.34
TRAPPC9-201ENST00000389328 KNSTRNQ9Y448 316 aa17.16■□□□□ 0.34
TRAPPC9-201ENST00000389328 ARAP1Q96P48 1450 aa17.15■□□□□ 0.34
TRAPPC9-201ENST00000389328 RRBP1Q9P2E9 1410 aaKnown RBP17.14■□□□□ 0.33
TRAPPC9-201ENST00000389328 PKD2Q13563 968 aa17.14■□□□□ 0.33
TRAPPC9-201ENST00000389328 NEUROD2Q15784 382 aa17.13■□□□□ 0.33
TRAPPC9-201ENST00000389328 WASHC2AQ641Q2 1341 aa17.12■□□□□ 0.33
TRAPPC9-201ENST00000389328 ATAD2BQ9ULI0 1458 aa17.12■□□□□ 0.33
TRAPPC9-201ENST00000389328 PAK3O75914 559 aaPredicted RBP17.12■□□□□ 0.33
TRAPPC9-201ENST00000389328 EXOC6Q8TAG9 804 aa17.12■□□□□ 0.33
TRAPPC9-201ENST00000389328 PDE4AP27815 886 aa17.11■□□□□ 0.33
TRAPPC9-201ENST00000389328 CCDC18Q5T9S5 1454 aa17.1■□□□□ 0.33
TRAPPC9-201ENST00000389328 SLC4A3P48751 1232 aa17.1■□□□□ 0.33
TRAPPC9-201ENST00000389328 FRAT1Q92837 279 aaPredicted RBP17.1■□□□□ 0.33
TRAPPC9-201ENST00000389328 PLEKHD1A6NEE1 506 aa17.09■□□□□ 0.33
TRAPPC9-201ENST00000389328 NAP1L5Q96NT1 182 aaPredicted RBP17.09■□□□□ 0.33
TRAPPC9-201ENST00000389328 CCDC184Q52MB2 194 aa17.08■□□□□ 0.32
TRAPPC9-201ENST00000389328 SYNJ1O43426 1573 aa17.07■□□□□ 0.32
TRAPPC9-201ENST00000389328 PLIN1O60240 522 aa17.07■□□□□ 0.32
TRAPPC9-201ENST00000389328 TRIM44Q96DX7 344 aaPredicted RBP17.06■□□□□ 0.32
TRAPPC9-201ENST00000389328 WDR97A6NE52 1622 aa17.06■□□□□ 0.32
TRAPPC9-201ENST00000389328 CHMP7Q8WUX9 453 aaPredicted RBP17.06■□□□□ 0.32
TRAPPC9-201ENST00000389328 SPRYD3Q8NCJ5 442 aa17.05■□□□□ 0.32
TRAPPC9-201ENST00000389328 EIF4G1Q04637 1599 aaKnown RBP17.04■□□□□ 0.32
TRAPPC9-201ENST00000389328 RALBP1Q15311 655 aa17.04■□□□□ 0.32
TRAPPC9-201ENST00000389328 SLKQ9H2G2 1235 aaPredicted RBP17.04■□□□□ 0.32
TRAPPC9-201ENST00000389328 KTN1Q86UP2 1357 aaKnown RBP17.04■□□□□ 0.32
TRAPPC9-201ENST00000389328 IGF1RP08069 1367 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms