RNA–Protein interactions for RNA: ENST00000379016.7

HIPK3-202, Transcript of homeodomain interacting protein kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HIPK3, Length 7,345 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3-202ENST00000379016 PDE4CQ08493 712 aa17.6■□□□□ 0.41
HIPK3-202ENST00000379016 NAP1L2Q9ULW6 460 aaPredicted RBP17.6■□□□□ 0.41
HIPK3-202ENST00000379016 GOLGA6L22H0YM25 854 aa17.59■□□□□ 0.41
HIPK3-202ENST00000379016 ISY1Q9ULR0 285 aaKnown RBP17.58■□□□□ 0.4
HIPK3-202ENST00000379016 SENP3-EIF4A1A0A087X0R7 540 aa17.56■□□□□ 0.4
HIPK3-202ENST00000379016 HNRNPUQ00839 825 aaKnown RBP eCLIP17.56■□□□□ 0.4
HIPK3-202ENST00000379016 KRI1Q8N9T8 703 aaKnown RBP17.56■□□□□ 0.4
HIPK3-202ENST00000379016 WDR43Q15061 677 aaKnown RBP eCLIP17.55■□□□□ 0.4
HIPK3-202ENST00000379016 ANO8Q9HCE9 1232 aaPredicted RBP17.54■□□□□ 0.4
HIPK3-202ENST00000379016 NOC3LQ8WTT2 800 aaKnown RBP17.53■□□□□ 0.4
HIPK3-202ENST00000379016 RTN4Q9NQC3 1192 aaKnown RBP17.52■□□□□ 0.4
HIPK3-202ENST00000379016 GOLGA6L6A8MZA4 724 aa17.52■□□□□ 0.39
HIPK3-202ENST00000379016 ERICH6BQ5W0A0 696 aa17.52■□□□□ 0.39
HIPK3-202ENST00000379016 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.52■□□□□ 0.391e-6■□□□□ 11.1
HIPK3-202ENST00000379016 BECN1Q14457 450 aa17.5■□□□□ 0.39
HIPK3-202ENST00000379016 TMC1Q8TDI8 760 aa17.48■□□□□ 0.39
HIPK3-202ENST00000379016 GOLGA2Q08379 1002 aa17.47■□□□□ 0.39
HIPK3-202ENST00000379016 IRX6P78412 446 aaPredicted RBP17.47■□□□□ 0.39
HIPK3-202ENST00000379016 FGD1P98174 961 aa17.47■□□□□ 0.39
HIPK3-202ENST00000379016 CASC1Q6TDU7 716 aa17.44■□□□□ 0.38
HIPK3-202ENST00000379016 PNNQ9H307 717 aaKnown RBP17.44■□□□□ 0.38
HIPK3-202ENST00000379016 ARID4BQ4LE39 1312 aaPredicted RBP17.43■□□□□ 0.38
HIPK3-202ENST00000379016 ARID3AQ99856 593 aa17.39■□□□□ 0.38
HIPK3-202ENST00000379016 KIAA2012Q0VF49 1180 aa17.39■□□□□ 0.37
HIPK3-202ENST00000379016 A0A0U1RQG5 324 aaPredicted RBP17.39■□□□□ 0.37
HIPK3-202ENST00000379016 DRC7Q8IY82 874 aa17.39■□□□□ 0.37
HIPK3-202ENST00000379016 NRDCO43847 1150 aa17.38■□□□□ 0.37
HIPK3-202ENST00000379016 ANP32EQ9BTT0 268 aa17.37■□□□□ 0.37
HIPK3-202ENST00000379016 KDM2AQ9Y2K7 1162 aa17.36■□□□□ 0.37
HIPK3-202ENST00000379016 KCNJ4P48050 445 aa17.34■□□□□ 0.37
HIPK3-202ENST00000379016 CHAF1AQ13111 956 aaPredicted RBP17.34■□□□□ 0.37
HIPK3-202ENST00000379016 DDRGK1Q96HY6 314 aa17.34■□□□□ 0.37
HIPK3-202ENST00000379016 LAS1LQ9Y4W2 734 aaKnown RBP17.34■□□□□ 0.37
HIPK3-202ENST00000379016 PPM1GO15355 546 aaPredicted RBP17.33■□□□□ 0.37
HIPK3-202ENST00000379016 LMOD2Q6P5Q4 547 aa17.33■□□□□ 0.36
HIPK3-202ENST00000379016 OS9Q13438 667 aaPredicted RBP17.32■□□□□ 0.36
HIPK3-202ENST00000379016 L1TD1Q5T7N2 865 aaKnown RBP17.31■□□□□ 0.36
HIPK3-202ENST00000379016 TNNT3P45378 269 aaPredicted RBP17.31■□□□□ 0.36
HIPK3-202ENST00000379016 CHIC2Q9UKJ5 165 aa17.3■□□□□ 0.36
HIPK3-202ENST00000379016 ACIN1Q9UKV3 1341 aaKnown RBP17.29■□□□□ 0.36
HIPK3-202ENST00000379016 GOLGA6L4A6NEF3 574 aa17.28■□□□□ 0.36
HIPK3-202ENST00000379016 DDX10Q13206 875 aaKnown RBP17.28■□□□□ 0.36
HIPK3-202ENST00000379016 HIRIP3Q9BW71 556 aaPredicted RBP17.28■□□□□ 0.36
HIPK3-202ENST00000379016 NPM1P06748 294 aaKnown RBP eCLIP17.27■□□□□ 0.36
HIPK3-202ENST00000379016 WWC1Q8IX03 1113 aa17.26■□□□□ 0.35
HIPK3-202ENST00000379016 HSP90AB1P08238 724 aaKnown RBP17.25■□□□□ 0.35
HIPK3-202ENST00000379016 GNL2Q13823 731 aaKnown RBP17.24■□□□□ 0.35
HIPK3-202ENST00000379016 FTSJ3Q8IY81 847 aaKnown RBP17.24■□□□□ 0.35
HIPK3-202ENST00000379016 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.23■□□□□ 0.35
HIPK3-202ENST00000379016 PPP1R15AO75807 674 aaPredicted RBP17.23■□□□□ 0.35
HIPK3-202ENST00000379016 CALRP27797 417 aaKnown RBP17.23■□□□□ 0.35
HIPK3-202ENST00000379016 PATL2C9JE40 543 aaKnown RBP17.22■□□□□ 0.35
HIPK3-202ENST00000379016 TONSLQ96HA7 1378 aa17.2■□□□□ 0.34
HIPK3-202ENST00000379016 MSNP26038 577 aaKnown RBP17.19■□□□□ 0.34
HIPK3-202ENST00000379016 MRS2Q9HD23 443 aa17.15■□□□□ 0.34
HIPK3-202ENST00000379016 CREBRFQ8IUR6 639 aa17.14■□□□□ 0.33
HIPK3-202ENST00000379016 ABCC9O60706 1549 aa17.14■□□□□ 0.33
HIPK3-202ENST00000379016 SPRYD3Q8NCJ5 442 aa17.13■□□□□ 0.33
HIPK3-202ENST00000379016 GOLGA6L1Q8N7Z2 621 aa17.11■□□□□ 0.33
HIPK3-202ENST00000379016 CNKSR2Q8WXI2 1034 aa17.11■□□□□ 0.33
HIPK3-202ENST00000379016 NEUROD2Q15784 382 aa17.1■□□□□ 0.33
HIPK3-202ENST00000379016 CEP89Q96ST8 783 aa17.09■□□□□ 0.33
HIPK3-202ENST00000379016 KCNH8Q96L42 1107 aa17.05■□□□□ 0.32
HIPK3-202ENST00000379016 RGS3P49796 1198 aa17.05■□□□□ 0.32
HIPK3-202ENST00000379016 VPS53Q5VIR6 699 aa17.04■□□□□ 0.32
HIPK3-202ENST00000379016 SOX12O15370 315 aa17.02■□□□□ 0.31
HIPK3-202ENST00000379016 TMX4Q9H1E5 349 aaPredicted RBP17.01■□□□□ 0.31
HIPK3-202ENST00000379016 FRAT1Q92837 279 aaPredicted RBP17.01■□□□□ 0.31
HIPK3-202ENST00000379016 TAF7LQ5H9L4 462 aa17■□□□□ 0.31
HIPK3-202ENST00000379016 SETQ01105 290 aaPredicted RBP16.99■□□□□ 0.31
HIPK3-202ENST00000379016 RGL3Q3MIN7 710 aa16.99■□□□□ 0.31
HIPK3-202ENST00000379016 HSP90B1P14625 803 aaKnown RBP16.98■□□□□ 0.31
HIPK3-202ENST00000379016 G3V3G9 751 aa16.98■□□□□ 0.31
HIPK3-202ENST00000379016 DCAF8Q5TAQ9 597 aa16.98■□□□□ 0.31
HIPK3-202ENST00000379016 ZNF330Q9Y3S2 320 aaPredicted RBP16.98■□□□□ 0.31
HIPK3-202ENST00000379016 CFAP53Q96M91 514 aa16.97■□□□□ 0.31
HIPK3-202ENST00000379016 RASSF8Q8NHQ8 419 aa16.96■□□□□ 0.31
HIPK3-202ENST00000379016 MAPK8IP3Q9UPT6 1336 aa16.94■□□□□ 0.3
HIPK3-202ENST00000379016 HSCBQ8IWL3 235 aa16.93■□□□□ 0.3
HIPK3-202ENST00000379016 EIF4G2P78344 907 aaKnown RBP eCLIP16.93■□□□□ 0.3
HIPK3-202ENST00000379016 PTMSP20962 102 aa16.93■□□□□ 0.3
HIPK3-202ENST00000379016 MCCP23508 829 aa16.93■□□□□ 0.3
HIPK3-202ENST00000379016 PES1O00541 588 aaKnown RBP16.92■□□□□ 0.3
HIPK3-202ENST00000379016 APBB1O00213 710 aa16.91■□□□□ 0.3
HIPK3-202ENST00000379016 RRP12Q5JTH9 1297 aaKnown RBP16.91■□□□□ 0.3
HIPK3-202ENST00000379016 TPM4P67936 248 aa16.89■□□□□ 0.29
HIPK3-202ENST00000379016 MARCH6O60337 910 aa16.88■□□□□ 0.29
HIPK3-202ENST00000379016 GZF1Q9H116 711 aaPredicted RBP16.86■□□□□ 0.29
HIPK3-202ENST00000379016 U2SURPO15042 1029 aaKnown RBP16.86■□□□□ 0.29
HIPK3-202ENST00000379016 TRHP20396 242 aaPredicted RBP16.85■□□□□ 0.29
HIPK3-202ENST00000379016 KIAA1211Q6ZU35 1233 aa16.84■□□□□ 0.29
HIPK3-202ENST00000379016 RRP7BPQ9NSQ0 103 aa16.84■□□□□ 0.29
HIPK3-202ENST00000379016 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.83■□□□□ 0.287e-7■■■■■ 57.2
HIPK3-202ENST00000379016 TPM3P06753 285 aa16.82■□□□□ 0.28
HIPK3-202ENST00000379016 CCAR2Q8N163 923 aaKnown RBP16.82■□□□□ 0.28
HIPK3-202ENST00000379016 CCDC9Q9Y3X0 531 aaKnown RBP16.82■□□□□ 0.28
HIPK3-202ENST00000379016 APPP05067 770 aa16.82■□□□□ 0.28
HIPK3-202ENST00000379016 CHMP3Q9Y3E7 222 aa16.82■□□□□ 0.28
HIPK3-202ENST00000379016 MLECQ14165 292 aa16.81■□□□□ 0.28
HIPK3-202ENST00000379016 USP35Q9P2H5 1018 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms