RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 GOLGA6L3A6NEY3 463 aa11.4□□□□□ -0.58
LIG3-202ENST00000378526 PODXL2Q9NZ53 605 aa11.39□□□□□ -0.59
LIG3-202ENST00000378526 KIAA2012Q0VF49 1180 aa11.38□□□□□ -0.59
LIG3-202ENST00000378526 GOLGA6L4A6NEF3 574 aa11.37□□□□□ -0.59
LIG3-202ENST00000378526 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.36□□□□□ -0.59
LIG3-202ENST00000378526 TRIM52Q96A61 297 aa11.36□□□□□ -0.59
LIG3-202ENST00000378526 VSIG10Q8N0Z9 540 aa11.35□□□□□ -0.59
LIG3-202ENST00000378526 FAM50AQ14320 339 aaKnown RBP11.34□□□□□ -0.59
LIG3-202ENST00000378526 NOM1Q5C9Z4 860 aaKnown RBP11.32□□□□□ -0.6
LIG3-202ENST00000378526 STK11IPQ8N1F8 1099 aa11.32□□□□□ -0.6
LIG3-202ENST00000378526 NOC3LQ8WTT2 800 aaKnown RBP11.31□□□□□ -0.6
LIG3-202ENST00000378526 PLCB2Q00722 1185 aa11.3□□□□□ -0.6
LIG3-202ENST00000378526 DRC7Q8IY82 874 aa11.3□□□□□ -0.6
LIG3-202ENST00000378526 PKNOX2Q96KN3 472 aa11.29□□□□□ -0.6
LIG3-202ENST00000378526 CHIC1Q5VXU3 224 aa11.26□□□□□ -0.61
LIG3-202ENST00000378526 TMC1Q8TDI8 760 aa11.26□□□□□ -0.61
LIG3-202ENST00000378526 HTATSF1O43719 755 aaKnown RBP11.26□□□□□ -0.61
LIG3-202ENST00000378526 LOC105371045A0A1W2PR82 267 aa11.25□□□□□ -0.61
LIG3-202ENST00000378526 GPS2Q13227 327 aa11.25□□□□□ -0.61
LIG3-202ENST00000378526 HSP90AB1P08238 724 aaKnown RBP11.25□□□□□ -0.61
LIG3-202ENST00000378526 CFAP44Q96MT7 982 aa11.24□□□□□ -0.61
LIG3-202ENST00000378526 TEX35Q5T0J7 233 aa11.24□□□□□ -0.61
LIG3-202ENST00000378526 SYAP1Q96A49 352 aaPredicted RBP11.23□□□□□ -0.61
LIG3-202ENST00000378526 ZNF771Q7L3S4 317 aaPredicted RBP11.23□□□□□ -0.61
LIG3-202ENST00000378526 FAM9BQ8IZU0 186 aa11.23□□□□□ -0.61
LIG3-202ENST00000378526 MTERF4Q7Z6M4 381 aaKnown RBP11.23□□□□□ -0.61
LIG3-202ENST00000378526 WDR43Q15061 677 aaKnown RBP eCLIP11.21□□□□□ -0.61
LIG3-202ENST00000378526 HSCBQ8IWL3 235 aa11.21□□□□□ -0.62
LIG3-202ENST00000378526 GBP4Q96PP9 640 aa11.21□□□□□ -0.62
LIG3-202ENST00000378526 RRP12Q5JTH9 1297 aaKnown RBP11.2□□□□□ -0.62
LIG3-202ENST00000378526 NEFHP12036 1026 aa11.19□□□□□ -0.62
LIG3-202ENST00000378526 MAP7D2Q96T17 732 aa11.19□□□□□ -0.62
LIG3-202ENST00000378526 TONSLQ96HA7 1378 aa11.18□□□□□ -0.62
LIG3-202ENST00000378526 PPP4R2Q9NY27 417 aa11.18□□□□□ -0.62
LIG3-202ENST00000378526 ARID3AQ99856 593 aa11.17□□□□□ -0.62
LIG3-202ENST00000378526 CHMP4BQ9H444 224 aaKnown RBP11.17□□□□□ -0.62
LIG3-202ENST00000378526 TPM4P67936 248 aa11.16□□□□□ -0.62
LIG3-202ENST00000378526 CWC15Q9P013 229 aaKnown RBP11.16□□□□□ -0.62
LIG3-202ENST00000378526 CCDC66A2RUB6 948 aa11.16□□□□□ -0.62
LIG3-202ENST00000378526 PHF14O94880 888 aa11.15□□□□□ -0.62
LIG3-202ENST00000378526 HMMRO75330 724 aa11.14□□□□□ -0.63
LIG3-202ENST00000378526 TAF3Q5VWG9 929 aa11.13□□□□□ -0.63
LIG3-202ENST00000378526 RDXP35241 583 aaKnown RBP11.12□□□□□ -0.63
LIG3-202ENST00000378526 MRS2Q9HD23 443 aa11.12□□□□□ -0.63
LIG3-202ENST00000378526 CALD1Q05682 793 aaKnown RBP11.11□□□□□ -0.63
LIG3-202ENST00000378526 CCDC70Q6NSX1 233 aa11.11□□□□□ -0.63
LIG3-202ENST00000378526 DCAF1Q9Y4B6 1507 aa11.1□□□□□ -0.63
LIG3-202ENST00000378526 MCCP23508 829 aa11.1□□□□□ -0.63
LIG3-202ENST00000378526 DDX10Q13206 875 aaKnown RBP11.09□□□□□ -0.63
LIG3-202ENST00000378526 CCDC191Q8NCU4 936 aa11.09□□□□□ -0.63
LIG3-202ENST00000378526 CSRNP3Q8WYN3 585 aa11.09□□□□□ -0.63
LIG3-202ENST00000378526 CSPP1Q1MSJ5 1256 aa11.08□□□□□ -0.64
LIG3-202ENST00000378526 HSP90B1P14625 803 aaKnown RBP11.08□□□□□ -0.64
LIG3-202ENST00000378526 HMGB1P09429 215 aaKnown RBP11.08□□□□□ -0.64
LIG3-202ENST00000378526 MS4A1P11836 297 aa11.08□□□□□ -0.64
LIG3-202ENST00000378526 IRX6P78412 446 aaPredicted RBP11.08□□□□□ -0.64
LIG3-202ENST00000378526 MEX3CQ5U5Q3 659 aaKnown RBP11.08□□□□□ -0.64
LIG3-202ENST00000378526 CCDC180Q9P1Z9 1646 aa11.08□□□□□ -0.64
LIG3-202ENST00000378526 CCDC34Q96HJ3 373 aa11.07□□□□□ -0.64
LIG3-202ENST00000378526 FTSJ3Q8IY81 847 aaKnown RBP11.07□□□□□ -0.64
LIG3-202ENST00000378526 PRKCSHP14314 528 aaPredicted RBP11.07□□□□□ -0.64
LIG3-202ENST00000378526 RBM19Q9Y4C8 960 aaKnown RBP11.06□□□□□ -0.64
LIG3-202ENST00000378526 TPRNQ4KMQ1 711 aa11.05□□□□□ -0.64
LIG3-202ENST00000378526 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.05□□□□□ -0.64
LIG3-202ENST00000378526 FGD1P98174 961 aa11.04□□□□□ -0.64
LIG3-202ENST00000378526 TPM3P06753 285 aa11.04□□□□□ -0.64
LIG3-202ENST00000378526 SALL2Q9Y467 1007 aaPredicted RBP11.04□□□□□ -0.64
LIG3-202ENST00000378526 ACBD3Q9H3P7 528 aa11.03□□□□□ -0.64
LIG3-202ENST00000378526 SUPT16HQ9Y5B9 1047 aaKnown RBP11.03□□□□□ -0.64
LIG3-202ENST00000378526 CDR1P51861 262 aa11.02□□□□□ -0.64
LIG3-202ENST00000378526 DCTN1Q14203 1278 aa11.02□□□□□ -0.65
LIG3-202ENST00000378526 DDX11L8A8MPP1 907 aa11.01□□□□□ -0.65
LIG3-202ENST00000378526 MIER1Q8N108 512 aa11.01□□□□□ -0.65
LIG3-202ENST00000378526 USP8P40818 1118 aa11□□□□□ -0.65
LIG3-202ENST00000378526 AK7Q96M32 723 aa11□□□□□ -0.65
LIG3-202ENST00000378526 DYDC1Q8WWB3 177 aa10.99□□□□□ -0.65
LIG3-202ENST00000378526 TAF7LQ5H9L4 462 aa10.99□□□□□ -0.65
LIG3-202ENST00000378526 ARGLU1Q9NWB6 273 aaPredicted RBP10.99□□□□□ -0.65
LIG3-202ENST00000378526 TULP1O00294 542 aaPredicted RBP10.99□□□□□ -0.65
LIG3-202ENST00000378526 PATL2C9JE40 543 aaKnown RBP10.98□□□□□ -0.65
LIG3-202ENST00000378526 INCENPQ9NQS7 918 aa10.98□□□□□ -0.65
LIG3-202ENST00000378526 NEXNQ0ZGT2 675 aa10.98□□□□□ -0.65
LIG3-202ENST00000378526 TPM2P07951 284 aa10.98□□□□□ -0.65
LIG3-202ENST00000378526 KCNJ4P48050 445 aa10.97□□□□□ -0.65
LIG3-202ENST00000378526 TSPYL1Q9H0U9 437 aa10.97□□□□□ -0.65
LIG3-202ENST00000378526 IPO9Q96P70 1041 aaKnown RBP10.97□□□□□ -0.65
LIG3-202ENST00000378526 H0YHG0 523 aa10.97□□□□□ -0.65
LIG3-202ENST00000378526 SKOR2Q2VWA4 1001 aaPredicted RBP10.97□□□□□ -0.65
LIG3-202ENST00000378526 CEP89Q96ST8 783 aa10.96□□□□□ -0.65
LIG3-202ENST00000378526 DEF6Q9H4E7 631 aa10.96□□□□□ -0.65
LIG3-202ENST00000378526 GZF1Q9H116 711 aaPredicted RBP10.96□□□□□ -0.66
LIG3-202ENST00000378526 GNL2Q13823 731 aaKnown RBP10.96□□□□□ -0.66
LIG3-202ENST00000378526 GSE1Q14687 1217 aa10.96□□□□□ -0.66
LIG3-202ENST00000378526 FAM13BQ9NYF5 915 aa10.95□□□□□ -0.66
LIG3-202ENST00000378526 TIMELESSQ9UNS1 1208 aa10.95□□□□□ -0.66
LIG3-202ENST00000378526 PDE4CQ08493 712 aa10.95□□□□□ -0.66
LIG3-202ENST00000378526 ZRSR2Q15696 482 aaKnown RBP10.95□□□□□ -0.66
LIG3-202ENST00000378526 HSP90B2PQ58FF3 399 aa10.94□□□□□ -0.66
LIG3-202ENST00000378526 TSR1Q2NL82 804 aaKnown RBP10.94□□□□□ -0.66
LIG3-202ENST00000378526 RGS3P49796 1198 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms