RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ERICH6BQ5W0A0 696 aa6.18□□□□□ -1.42
SCN1A-202ENST00000375405 NEUROD1Q13562 356 aa6.18□□□□□ -1.42
SCN1A-202ENST00000375405 NISCHQ9Y2I1 1504 aa6.18□□□□□ -1.42
SCN1A-202ENST00000375405 PLCB2Q00722 1185 aa6.18□□□□□ -1.42
SCN1A-202ENST00000375405 FAM50AQ14320 339 aaKnown RBP6.18□□□□□ -1.42
SCN1A-202ENST00000375405 PNNQ9H307 717 aaKnown RBP6.18□□□□□ -1.42
SCN1A-202ENST00000375405 APPP05067 770 aa6.17□□□□□ -1.42
SCN1A-202ENST00000375405 RRP12Q5JTH9 1297 aaKnown RBP6.17□□□□□ -1.42
SCN1A-202ENST00000375405 KIAA2012Q0VF49 1180 aa6.17□□□□□ -1.42
SCN1A-202ENST00000375405 ANP32EQ9BTT0 268 aa6.15□□□□□ -1.42
SCN1A-202ENST00000375405 MYH16Q9H6N6 1097 aa6.15□□□□□ -1.42
SCN1A-202ENST00000375405 ACIN1Q9UKV3 1341 aaKnown RBP6.14□□□□□ -1.43
SCN1A-202ENST00000375405 PATL2C9JE40 543 aaKnown RBP6.14□□□□□ -1.43
SCN1A-202ENST00000375405 DCAF8L1A6NGE4 600 aa6.13□□□□□ -1.43
SCN1A-202ENST00000375405 NEUROD2Q15784 382 aa6.13□□□□□ -1.43
SCN1A-202ENST00000375405 PPP4R2Q9NY27 417 aa6.13□□□□□ -1.43
SCN1A-202ENST00000375405 SALL2Q9Y467 1007 aaPredicted RBP6.13□□□□□ -1.43
SCN1A-202ENST00000375405 LMOD2Q6P5Q4 547 aa6.13□□□□□ -1.43
SCN1A-202ENST00000375405 PPM1FP49593 454 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-202ENST00000375405 FGD1P98174 961 aa6.12□□□□□ -1.43
SCN1A-202ENST00000375405 TMX4Q9H1E5 349 aaPredicted RBP6.12□□□□□ -1.43
SCN1A-202ENST00000375405 ANP32CO43423 234 aa6.11□□□□□ -1.43
SCN1A-202ENST00000375405 GOLGA6L6A8MZA4 724 aa6.11□□□□□ -1.43
SCN1A-202ENST00000375405 CHAF1AQ13111 956 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-202ENST00000375405 G3V3G9 751 aa6.09□□□□□ -1.43
SCN1A-202ENST00000375405 L1TD1Q5T7N2 865 aaKnown RBP6.09□□□□□ -1.43
SCN1A-202ENST00000375405 DCAF8Q5TAQ9 597 aa6.09□□□□□ -1.43
SCN1A-202ENST00000375405 PHF23Q9BUL5 403 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-202ENST00000375405 VPS53Q5VIR6 699 aa6.09□□□□□ -1.44
SCN1A-202ENST00000375405 CEP89Q96ST8 783 aa6.09□□□□□ -1.44
SCN1A-202ENST00000375405 TAF7LQ5H9L4 462 aa6.07□□□□□ -1.44
SCN1A-202ENST00000375405 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.07□□□□□ -1.44
SCN1A-202ENST00000375405 CWC22Q9HCG8 908 aaKnown RBP6.07□□□□□ -1.44
SCN1A-202ENST00000375405 PAF1Q8N7H5 531 aa6.06□□□□□ -1.44
SCN1A-202ENST00000375405 ARID3CA6NKF2 412 aa6.06□□□□□ -1.44
SCN1A-202ENST00000375405 NRDCO43847 1150 aa6.06□□□□□ -1.44
SCN1A-202ENST00000375405 GNL2Q13823 731 aaKnown RBP6.06□□□□□ -1.44
SCN1A-202ENST00000375405 KLHL34Q8N239 644 aa6.05□□□□□ -1.44
SCN1A-202ENST00000375405 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.05□□□□□ -1.44
SCN1A-202ENST00000375405 DRC7Q8IY82 874 aa6.04□□□□□ -1.44
SCN1A-202ENST00000375405 CCDC136Q96JN2 1154 aa6.04□□□□□ -1.44
SCN1A-202ENST00000375405 TNNT3P45378 269 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-202ENST00000375405 KCNJ4P48050 445 aa6.04□□□□□ -1.44
SCN1A-202ENST00000375405 CREBRFQ8IUR6 639 aa6.04□□□□□ -1.44
SCN1A-202ENST00000375405 CCDC97Q96F63 343 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-202ENST00000375405 GOLGA6L22H0YM25 854 aa6.03□□□□□ -1.44
SCN1A-202ENST00000375405 OS9Q13438 667 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-202ENST00000375405 BBXQ8WY36 941 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-202ENST00000375405 ARID4BQ4LE39 1312 aaPredicted RBP6.03□□□□□ -1.44
SCN1A-202ENST00000375405 ZNF777Q9ULD5 760 aaPredicted RBP6.02□□□□□ -1.45
SCN1A-202ENST00000375405 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.02□□□□□ -1.45
SCN1A-202ENST00000375405 CASC1Q6TDU7 716 aa6.02□□□□□ -1.45
SCN1A-202ENST00000375405 CCDC9Q9Y3X0 531 aaKnown RBP6.02□□□□□ -1.45
SCN1A-202ENST00000375405 NAP1L5Q96NT1 182 aaPredicted RBP6.01□□□□□ -1.45
SCN1A-202ENST00000375405 ARID3AQ99856 593 aa6.01□□□□□ -1.45
SCN1A-202ENST00000375405 MAP3K9P80192 1104 aa6.01□□□□□ -1.45
SCN1A-202ENST00000375405 TCEAL9Q9UHQ7 104 aa6□□□□□ -1.45
SCN1A-202ENST00000375405 SEPT11Q9NVA2 429 aaKnown RBP6□□□□□ -1.45
SCN1A-202ENST00000375405 GOLGA6L4A6NEF3 574 aa6□□□□□ -1.45
SCN1A-202ENST00000375405 PPM1GO15355 546 aaPredicted RBP6□□□□□ -1.45
SCN1A-202ENST00000375405 PPP1R15AO75807 674 aaPredicted RBP6□□□□□ -1.45
SCN1A-202ENST00000375405 NPM1P06748 294 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-202ENST00000375405 RTN4Q9NQC3 1192 aaKnown RBP5.99□□□□□ -1.45
SCN1A-202ENST00000375405 MEX3CQ5U5Q3 659 aaKnown RBP5.99□□□□□ -1.45
SCN1A-202ENST00000375405 ZNF330Q9Y3S2 320 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-202ENST00000375405 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.99□□□□□ -1.451e-6■■■□□ 16.7
SCN1A-202ENST00000375405 GOLGA6L1Q8N7Z2 621 aa5.99□□□□□ -1.45
SCN1A-202ENST00000375405 AEBP2Q6ZN18 517 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-202ENST00000375405 CBX1P83916 185 aa5.98□□□□□ -1.45
SCN1A-202ENST00000375405 LAS1LQ9Y4W2 734 aaKnown RBP5.98□□□□□ -1.45
SCN1A-202ENST00000375405 MSH5O43196 834 aa5.97□□□□□ -1.45
SCN1A-202ENST00000375405 IRX6P78412 446 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-202ENST00000375405 BCCIPQ9P287 314 aaKnown RBP eCLIP5.97□□□□□ -1.45
SCN1A-202ENST00000375405 RASSF8Q8NHQ8 419 aa5.97□□□□□ -1.45
SCN1A-202ENST00000375405 MARCH6O60337 910 aa5.97□□□□□ -1.45
SCN1A-202ENST00000375405 CTDP1Q9Y5B0 961 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-202ENST00000375405 RAD21O60216 631 aa5.97□□□□□ -1.45
SCN1A-202ENST00000375405 EIF4G2P78344 907 aaKnown RBP eCLIP5.97□□□□□ -1.45
SCN1A-202ENST00000375405 RBM19Q9Y4C8 960 aaKnown RBP5.96□□□□□ -1.45
SCN1A-202ENST00000375405 WDR43Q15061 677 aaKnown RBP eCLIP5.96□□□□□ -1.46
SCN1A-202ENST00000375405 PTMSP20962 102 aa5.96□□□□□ -1.46
SCN1A-202ENST00000375405 SETQ01105 290 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-202ENST00000375405 PES1O00541 588 aaKnown RBP5.94□□□□□ -1.46
SCN1A-202ENST00000375405 CFAP44Q96MT7 982 aa5.94□□□□□ -1.46
SCN1A-202ENST00000375405 BECN1Q14457 450 aa5.94□□□□□ -1.46
SCN1A-202ENST00000375405 SAMD1Q6SPF0 538 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-202ENST00000375405 PLCD3Q8N3E9 789 aa5.93□□□□□ -1.46
SCN1A-202ENST00000375405 TRHP20396 242 aaPredicted RBP5.93□□□□□ -1.46
SCN1A-202ENST00000375405 TPM4P67936 248 aa5.93□□□□□ -1.46
SCN1A-202ENST00000375405 SPRYD3Q8NCJ5 442 aa5.92□□□□□ -1.46
SCN1A-202ENST00000375405 IPO9Q96P70 1041 aaKnown RBP5.92□□□□□ -1.46
SCN1A-202ENST00000375405 SPDYE4A6NLX3 237 aa5.92□□□□□ -1.46
SCN1A-202ENST00000375405 SENP3-EIF4A1A0A087X0R7 540 aa5.92□□□□□ -1.46
SCN1A-202ENST00000375405 HSP90B1P14625 803 aaKnown RBP5.91□□□□□ -1.46
SCN1A-202ENST00000375405 FAM9BQ8IZU0 186 aa5.91□□□□□ -1.46
SCN1A-202ENST00000375405 GSE1Q14687 1217 aa5.91□□□□□ -1.46
SCN1A-202ENST00000375405 RSPH4AQ5TD94 716 aa5.91□□□□□ -1.46
SCN1A-202ENST00000375405 FRAT2O75474 233 aaPredicted RBP5.91□□□□□ -1.46
SCN1A-202ENST00000375405 TMC1Q8TDI8 760 aa5.91□□□□□ -1.46
SCN1A-202ENST00000375405 TRIM34Q9BYJ4 488 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms