RNA–Protein interactions for RNA: ENST00000375274.6

PTCH1-203, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 4,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-203ENST00000375274 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-203ENST00000375274 SIN3AQ96ST3 1273 aa15.43■□□□□ 0.06
PTCH1-203ENST00000375274 CECR2Q9BXF3 1484 aa15.42■□□□□ 0.06
PTCH1-203ENST00000375274 WDR43Q15061 677 aaKnown RBP eCLIP15.4■□□□□ 0.06
PTCH1-203ENST00000375274 HSP90AA1P07900 732 aaKnown RBP15.4■□□□□ 0.06
PTCH1-203ENST00000375274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.4■□□□□ 0.06
PTCH1-203ENST00000375274 SOGA1O94964 1423 aa15.4■□□□□ 0.06
PTCH1-203ENST00000375274 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
PTCH1-203ENST00000375274 CHGAP10645 457 aaKnown RBP15.38■□□□□ 0.05
PTCH1-203ENST00000375274 SLC24A1O60721 1099 aa15.38■□□□□ 0.05
PTCH1-203ENST00000375274 CCNB3Q8WWL7 1395 aa15.36■□□□□ 0.05
PTCH1-203ENST00000375274 ANP32BQ92688 251 aaKnown RBP15.36■□□□□ 0.05
PTCH1-203ENST00000375274 BAZ1AQ9NRL2 1556 aaPredicted RBP15.34■□□□□ 0.05
PTCH1-203ENST00000375274 PPP4R2Q9NY27 417 aa15.33■□□□□ 0.05
PTCH1-203ENST00000375274 SENP3-EIF4A1A0A087X0R7 540 aa15.32■□□□□ 0.04
PTCH1-203ENST00000375274 BAZ1BQ9UIG0 1483 aaKnown RBP15.32■□□□□ 0.04
PTCH1-203ENST00000375274 TIMELESSQ9UNS1 1208 aa15.31■□□□□ 0.04
PTCH1-203ENST00000375274 VPS8Q8N3P4 1428 aa15.3■□□□□ 0.04
PTCH1-203ENST00000375274 ARXQ96QS3 562 aa15.27■□□□□ 0.04
PTCH1-203ENST00000375274 DDRGK1Q96HY6 314 aa15.26■□□□□ 0.03
PTCH1-203ENST00000375274 CCER2I3L3R5 266 aa15.26■□□□□ 0.03
PTCH1-203ENST00000375274 RGL3Q3MIN7 710 aa15.24■□□□□ 0.03
PTCH1-203ENST00000375274 B4GALNT3Q6L9W6 998 aa15.24■□□□□ 0.03
PTCH1-203ENST00000375274 CHMP7Q8WUX9 453 aaPredicted RBP15.23■□□□□ 0.03
PTCH1-203ENST00000375274 CARD11Q9BXL7 1154 aa15.23■□□□□ 0.03
PTCH1-203ENST00000375274 CCDC88BA6NC98 1476 aa15.23■□□□□ 0.03
PTCH1-203ENST00000375274 KANK4Q5T7N3 995 aaPredicted RBP15.22■□□□□ 0.03
PTCH1-203ENST00000375274 RBM19Q9Y4C8 960 aaKnown RBP15.22■□□□□ 0.03
PTCH1-203ENST00000375274 MROH2BQ7Z745 1585 aa15.22■□□□□ 0.03
PTCH1-203ENST00000375274 CFDP1Q9UEE9 299 aaPredicted RBP15.21■□□□□ 0.03
PTCH1-203ENST00000375274 FHAD1B1AJZ9 1412 aa15.21■□□□□ 0.03
PTCH1-203ENST00000375274 PLEKHD1A6NEE1 506 aa15.2■□□□□ 0.02
PTCH1-203ENST00000375274 STAG3Q9UJ98 1225 aa15.2■□□□□ 0.02
PTCH1-203ENST00000375274 GLIPR1L2Q4G1C9 344 aa15.19■□□□□ 0.02
PTCH1-203ENST00000375274 NOP58Q9Y2X3 529 aaKnown RBP15.19■□□□□ 0.02
PTCH1-203ENST00000375274 ABCC8Q09428 1581 aa15.19■□□□□ 0.02
PTCH1-203ENST00000375274 PPM1GO15355 546 aaPredicted RBP15.19■□□□□ 0.02
PTCH1-203ENST00000375274 SETD5Q9C0A6 1442 aa15.19■□□□□ 0.02
PTCH1-203ENST00000375274 BECN1Q14457 450 aa15.18■□□□□ 0.02
PTCH1-203ENST00000375274 KNSTRNQ9Y448 316 aa15.15■□□□□ 0.02
PTCH1-203ENST00000375274 CARMIL1Q5VZK9 1371 aa15.15■□□□□ 0.02
PTCH1-203ENST00000375274 TSHZ2Q9NRE2 1034 aa15.13■□□□□ 0.01
PTCH1-203ENST00000375274 LAS1LQ9Y4W2 734 aaKnown RBP15.13■□□□□ 0.01
PTCH1-203ENST00000375274 NPM1P06748 294 aaKnown RBP eCLIP15.13■□□□□ 0.01
PTCH1-203ENST00000375274 RAB3GAP2Q9H2M9 1393 aa15.13■□□□□ 0.01
PTCH1-203ENST00000375274 CDCA8Q53HL2 280 aa15.12■□□□□ 0.01
PTCH1-203ENST00000375274 ESF1Q9H501 851 aaKnown RBP15.12■□□□□ 0.01
PTCH1-203ENST00000375274 HSPA5P11021 654 aaKnown RBP15.11■□□□□ 0.01
PTCH1-203ENST00000375274 CUX2O14529 1486 aa15.1■□□□□ 0.01
PTCH1-203ENST00000375274 ERICH6BQ5W0A0 696 aa15.08■□□□□ 0.01
PTCH1-203ENST00000375274 PPP1R15AO75807 674 aaPredicted RBP15.08■□□□□ 0
PTCH1-203ENST00000375274 RGS3P49796 1198 aa15.08■□□□□ 0
PTCH1-203ENST00000375274 MYH16Q9H6N6 1097 aa15.08■□□□□ 0
PTCH1-203ENST00000375274 KCNH8Q96L42 1107 aa15.08■□□□□ 0
PTCH1-203ENST00000375274 CFAP53Q96M91 514 aa15.04■□□□□ -0
PTCH1-203ENST00000375274 TRIM44Q96DX7 344 aaPredicted RBP15.04■□□□□ -0
PTCH1-203ENST00000375274 ARHGAP35Q9NRY4 1499 aa15.04■□□□□ -0
PTCH1-203ENST00000375274 NEUROD2Q15784 382 aa15.04■□□□□ -0
PTCH1-203ENST00000375274 CC2D1BQ5T0F9 858 aaKnown RBP15.03■□□□□ -0
PTCH1-203ENST00000375274 DEKP35659 375 aaKnown RBP15.03■□□□□ -0
PTCH1-203ENST00000375274 RTN4Q9NQC3 1192 aaKnown RBP15.03■□□□□ -0
PTCH1-203ENST00000375274 DCAF11Q8TEB1 546 aa15.02■□□□□ -0
PTCH1-203ENST00000375274 GOLGA6L22H0YM25 854 aa15.01□□□□□ -0.01
PTCH1-203ENST00000375274 FTSJ3Q8IY81 847 aaKnown RBP15□□□□□ -0.01
PTCH1-203ENST00000375274 DHX57Q6P158 1386 aaKnown RBP14.99□□□□□ -0.01
PTCH1-203ENST00000375274 FRAT1Q92837 279 aaPredicted RBP14.99□□□□□ -0.01
PTCH1-203ENST00000375274 FOXD1Q16676 465 aa14.98□□□□□ -0.01
PTCH1-203ENST00000375274 WIZO95785 1651 aa14.97□□□□□ -0.01
PTCH1-203ENST00000375274 TMF1P82094 1093 aa14.97□□□□□ -0.01
PTCH1-203ENST00000375274 SENP3Q9H4L4 574 aaPredicted RBP14.96□□□□□ -0.01
PTCH1-203ENST00000375274 MPHOSPH9Q99550 1183 aa14.95□□□□□ -0.02
PTCH1-203ENST00000375274 RAPGEF2Q9Y4G8 1499 aa14.94□□□□□ -0.02
PTCH1-203ENST00000375274 PKD2Q13563 968 aa14.94□□□□□ -0.02
PTCH1-203ENST00000375274 TOP2AP11388 1531 aaKnown RBP14.93□□□□□ -0.02
PTCH1-203ENST00000375274 RCAN3Q9UKA8 241 aa14.91□□□□□ -0.02
PTCH1-203ENST00000375274 NCLP19338 710 aaKnown RBP14.91□□□□□ -0.02
PTCH1-203ENST00000375274 TNNT2P45379 298 aaPredicted RBP14.91□□□□□ -0.02
PTCH1-203ENST00000375274 L3MBTL2Q969R5 705 aa14.91□□□□□ -0.02
PTCH1-203ENST00000375274 RUSC2Q8N2Y8 1516 aa14.91□□□□□ -0.02
PTCH1-203ENST00000375274 NUDCQ9Y266 331 aa14.91□□□□□ -0.02
PTCH1-203ENST00000375274 MAPK8IP3Q9UPT6 1336 aa14.91□□□□□ -0.02
PTCH1-203ENST00000375274 FMN1Q68DA7 1419 aa14.9□□□□□ -0.02
PTCH1-203ENST00000375274 TCERG1O14776 1098 aaKnown RBP14.89□□□□□ -0.03
PTCH1-203ENST00000375274 PLPPR3Q6T4P5 718 aa14.89□□□□□ -0.03
PTCH1-203ENST00000375274 KTN1Q86UP2 1357 aaKnown RBP14.88□□□□□ -0.03
PTCH1-203ENST00000375274 EIF4G1Q04637 1599 aaKnown RBP14.88□□□□□ -0.03
PTCH1-203ENST00000375274 MS4A1P11836 297 aa14.87□□□□□ -0.03
PTCH1-203ENST00000375274 RALBP1Q15311 655 aa14.87□□□□□ -0.03
PTCH1-203ENST00000375274 NAP1L5Q96NT1 182 aaPredicted RBP14.85□□□□□ -0.03
PTCH1-203ENST00000375274 SMARCA2P51531 1590 aa14.84□□□□□ -0.03
PTCH1-203ENST00000375274 IPO9Q96P70 1041 aaKnown RBP14.84□□□□□ -0.03
PTCH1-203ENST00000375274 U2SURPO15042 1029 aaKnown RBP14.84□□□□□ -0.03
PTCH1-203ENST00000375274 CASC1Q6TDU7 716 aa14.83□□□□□ -0.03
PTCH1-203ENST00000375274 PTMAP06454 111 aaKnown RBP14.83□□□□□ -0.04
PTCH1-203ENST00000375274 CHMP4BQ9H444 224 aaKnown RBP14.82□□□□□ -0.04
PTCH1-203ENST00000375274 FHOD3Q2V2M9 1422 aa14.81□□□□□ -0.04
PTCH1-203ENST00000375274 HSP90AB1P08238 724 aaKnown RBP14.81□□□□□ -0.04
PTCH1-203ENST00000375274 NUP155O75694 1391 aa14.81□□□□□ -0.04
PTCH1-203ENST00000375274 TDRD9Q8NDG6 1382 aaKnown RBP14.8□□□□□ -0.04
PTCH1-203ENST00000375274 NLRP13Q86W25 1043 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms