RNA–Protein interactions for RNA: ENST00000374747.9

NPLOC4-202, Transcript of NPL4 homolog, ubiquitin recognition factor, humanhuman

TSL 2 BASIC

Gene NPLOC4, Length 5,538 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPLOC4-202ENST00000374747 FKBP8Q14318 412 aa16.72■□□□□ 0.27
NPLOC4-202ENST00000374747 CHIC2Q9UKJ5 165 aa16.71■□□□□ 0.27
NPLOC4-202ENST00000374747 CADPSQ9ULU8 1353 aa16.7■□□□□ 0.26
NPLOC4-202ENST00000374747 ANP32BQ92688 251 aaKnown RBP16.7■□□□□ 0.26
NPLOC4-202ENST00000374747 BCL11AQ9H165 835 aa16.69■□□□□ 0.26
NPLOC4-202ENST00000374747 UNC13AQ9UPW8 1703 aa16.69■□□□□ 0.26
NPLOC4-202ENST00000374747 PLEKHD1A6NEE1 506 aa16.69■□□□□ 0.26
NPLOC4-202ENST00000374747 NEFMP07197 916 aa16.68■□□□□ 0.26
NPLOC4-202ENST00000374747 GLIPR1L2Q4G1C9 344 aa16.66■□□□□ 0.26
NPLOC4-202ENST00000374747 BICRAQ9NZM4 1560 aa16.65■□□□□ 0.26
NPLOC4-202ENST00000374747 FHAD1B1AJZ9 1412 aa16.64■□□□□ 0.25
NPLOC4-202ENST00000374747 ESF1Q9H501 851 aaKnown RBP16.63■□□□□ 0.25
NPLOC4-202ENST00000374747 SYNJ1O43426 1573 aa16.61■□□□□ 0.25
NPLOC4-202ENST00000374747 MIER1Q8N108 512 aa16.61■□□□□ 0.25
NPLOC4-202ENST00000374747 RAPGEF2Q9Y4G8 1499 aa16.6■□□□□ 0.25
NPLOC4-202ENST00000374747 SLC24A1O60721 1099 aa16.59■□□□□ 0.25
NPLOC4-202ENST00000374747 HSP90AA1P07900 732 aaKnown RBP16.58■□□□□ 0.24
NPLOC4-202ENST00000374747 UPF2Q9HAU5 1272 aaKnown RBP16.58■□□□□ 0.24
NPLOC4-202ENST00000374747 HNRNPUQ00839 825 aaKnown RBP eCLIP16.57■□□□□ 0.242e-8■■□□□ 13.5
NPLOC4-202ENST00000374747 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.56■□□□□ 0.245e-7■■□□□ 13.1
NPLOC4-202ENST00000374747 KCNH8Q96L42 1107 aa16.56■□□□□ 0.24
NPLOC4-202ENST00000374747 CFDP1Q9UEE9 299 aaPredicted RBP16.54■□□□□ 0.24
NPLOC4-202ENST00000374747 RRP7BPQ9NSQ0 103 aa16.54■□□□□ 0.24
NPLOC4-202ENST00000374747 CHGAP10645 457 aaKnown RBP16.52■□□□□ 0.24
NPLOC4-202ENST00000374747 KANK4Q5T7N3 995 aaPredicted RBP16.52■□□□□ 0.23
NPLOC4-202ENST00000374747 TDRD9Q8NDG6 1382 aaKnown RBP16.52■□□□□ 0.23
NPLOC4-202ENST00000374747 VPS8Q8N3P4 1428 aa16.51■□□□□ 0.23
NPLOC4-202ENST00000374747 STAG3Q9UJ98 1225 aa16.5■□□□□ 0.23
NPLOC4-202ENST00000374747 NBR1Q14596 966 aa16.5■□□□□ 0.23
NPLOC4-202ENST00000374747 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
NPLOC4-202ENST00000374747 CCDC136Q96JN2 1154 aa16.48■□□□□ 0.23
NPLOC4-202ENST00000374747 DDX10Q13206 875 aaKnown RBP16.47■□□□□ 0.23
NPLOC4-202ENST00000374747 FAM9BQ8IZU0 186 aa16.47■□□□□ 0.23
NPLOC4-202ENST00000374747 FANCD2Q9BXW9 1451 aa16.46■□□□□ 0.23
NPLOC4-202ENST00000374747 CCNB3Q8WWL7 1395 aa16.43■□□□□ 0.22
NPLOC4-202ENST00000374747 CARMIL2Q6F5E8 1435 aa16.43■□□□□ 0.22
NPLOC4-202ENST00000374747 FMN1Q68DA7 1419 aa16.4■□□□□ 0.22
NPLOC4-202ENST00000374747 PEG3Q9GZU2 1588 aa16.4■□□□□ 0.22
NPLOC4-202ENST00000374747 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.39■□□□□ 0.21
NPLOC4-202ENST00000374747 KDM2AQ9Y2K7 1162 aa16.38■□□□□ 0.21
NPLOC4-202ENST00000374747 KIF21BO75037 1637 aa16.38■□□□□ 0.21
NPLOC4-202ENST00000374747 TMC1Q8TDI8 760 aa16.35■□□□□ 0.21
NPLOC4-202ENST00000374747 SALL2Q9Y467 1007 aaPredicted RBP16.34■□□□□ 0.21
NPLOC4-202ENST00000374747 ARXQ96QS3 562 aa16.34■□□□□ 0.21
NPLOC4-202ENST00000374747 ARHGAP35Q9NRY4 1499 aa16.34■□□□□ 0.21
NPLOC4-202ENST00000374747 EIF4G2P78344 907 aaKnown RBP eCLIP16.33■□□□□ 0.212e-15■■■■□ 23.9
NPLOC4-202ENST00000374747 ARAP1Q96P48 1450 aa16.31■□□□□ 0.2
NPLOC4-202ENST00000374747 MRS2Q9HD23 443 aa16.3■□□□□ 0.2
NPLOC4-202ENST00000374747 DHX57Q6P158 1386 aaKnown RBP16.3■□□□□ 0.2
NPLOC4-202ENST00000374747 PRXQ9BXM0 1461 aa16.28■□□□□ 0.2
NPLOC4-202ENST00000374747 PLPPR3Q6T4P5 718 aa16.28■□□□□ 0.2
NPLOC4-202ENST00000374747 FGD5Q6ZNL6 1462 aa16.27■□□□□ 0.19
NPLOC4-202ENST00000374747 WDR43Q15061 677 aaKnown RBP eCLIP16.25■□□□□ 0.19
NPLOC4-202ENST00000374747 IRX6P78412 446 aaPredicted RBP16.25■□□□□ 0.19
NPLOC4-202ENST00000374747 DDRGK1Q96HY6 314 aa16.24■□□□□ 0.19
NPLOC4-202ENST00000374747 FHOD3Q2V2M9 1422 aa16.24■□□□□ 0.19
NPLOC4-202ENST00000374747 TOP2BQ02880 1626 aa16.23■□□□□ 0.19
NPLOC4-202ENST00000374747 HMGXB3Q12766 1538 aa16.23■□□□□ 0.19
NPLOC4-202ENST00000374747 SETD5Q9C0A6 1442 aa16.23■□□□□ 0.19
NPLOC4-202ENST00000374747 RGL3Q3MIN7 710 aa16.22■□□□□ 0.19
NPLOC4-202ENST00000374747 ANP32EQ9BTT0 268 aa16.22■□□□□ 0.19
NPLOC4-202ENST00000374747 CFTRP13569 1480 aa16.21■□□□□ 0.19
NPLOC4-202ENST00000374747 CUX1P39880 1505 aa16.2■□□□□ 0.18
NPLOC4-202ENST00000374747 IGF1RP08069 1367 aa16.2■□□□□ 0.18
NPLOC4-202ENST00000374747 BECN1Q14457 450 aa16.2■□□□□ 0.18
NPLOC4-202ENST00000374747 JPH4Q96JJ6 628 aa16.2■□□□□ 0.18
NPLOC4-202ENST00000374747 HIRIP3Q9BW71 556 aaPredicted RBP16.2■□□□□ 0.18
NPLOC4-202ENST00000374747 TIMELESSQ9UNS1 1208 aa16.2■□□□□ 0.18
NPLOC4-202ENST00000374747 GAPVD1Q14C86 1478 aa16.19■□□□□ 0.18
NPLOC4-202ENST00000374747 TRIM44Q96DX7 344 aaPredicted RBP16.19■□□□□ 0.18
NPLOC4-202ENST00000374747 SIN3AQ96ST3 1273 aa16.18■□□□□ 0.18
NPLOC4-202ENST00000374747 PPP1R15AO75807 674 aaPredicted RBP16.16■□□□□ 0.18
NPLOC4-202ENST00000374747 RAD54L2Q9Y4B4 1467 aa16.16■□□□□ 0.18
NPLOC4-202ENST00000374747 CC2D2AQ9P2K1 1620 aa16.15■□□□□ 0.18
NPLOC4-202ENST00000374747 MYH16Q9H6N6 1097 aa16.14■□□□□ 0.17
NPLOC4-202ENST00000374747 ARID4BQ4LE39 1312 aaPredicted RBP16.14■□□□□ 0.17
NPLOC4-202ENST00000374747 KANK1Q14678 1352 aa16.14■□□□□ 0.17
NPLOC4-202ENST00000374747 CCDC18Q5T9S5 1454 aa16.13■□□□□ 0.17
NPLOC4-202ENST00000374747 CDCA8Q53HL2 280 aa16.13■□□□□ 0.17
NPLOC4-202ENST00000374747 EFCAB2Q5VUJ9 269 aa16.13■□□□□ 0.17
NPLOC4-202ENST00000374747 CARD11Q9BXL7 1154 aa16.13■□□□□ 0.17
NPLOC4-202ENST00000374747 GOLGA6L22H0YM25 854 aa16.11■□□□□ 0.17
NPLOC4-202ENST00000374747 NCLP19338 710 aaKnown RBP16.09■□□□□ 0.17
NPLOC4-202ENST00000374747 ANKRD30AQ9BXX3 1397 aa16.08■□□□□ 0.17
NPLOC4-202ENST00000374747 PPM1GO15355 546 aaPredicted RBP16.08■□□□□ 0.17
NPLOC4-202ENST00000374747 RAB3GAP2Q9H2M9 1393 aa16.08■□□□□ 0.16
NPLOC4-202ENST00000374747 TNNT2P45379 298 aaPredicted RBP16.08■□□□□ 0.16
NPLOC4-202ENST00000374747 ERICH3Q5RHP9 1530 aa16.08■□□□□ 0.16
NPLOC4-202ENST00000374747 ERICH6BQ5W0A0 696 aa16.07■□□□□ 0.16
NPLOC4-202ENST00000374747 RSPH4AQ5TD94 716 aa16.07■□□□□ 0.16
NPLOC4-202ENST00000374747 RRBP1Q9P2E9 1410 aaKnown RBP16.06■□□□□ 0.16
NPLOC4-202ENST00000374747 BIVM-ERCC5R4GMW8 1640 aa16.05■□□□□ 0.16
NPLOC4-202ENST00000374747 PTPRGP23470 1445 aa16.04■□□□□ 0.16
NPLOC4-202ENST00000374747 PHLDB1Q86UU1 1377 aa16.03■□□□□ 0.16
NPLOC4-202ENST00000374747 PKD2Q13563 968 aa16.03■□□□□ 0.16
NPLOC4-202ENST00000374747 NESP48681 1621 aa16.02■□□□□ 0.16
NPLOC4-202ENST00000374747 AQRO60306 1485 aaKnown RBP eCLIP16.01■□□□□ 0.157e-8■■■■□ 22.4
NPLOC4-202ENST00000374747 DCAF11Q8TEB1 546 aa16.01■□□□□ 0.15
NPLOC4-202ENST00000374747 CDK11BP21127 795 aaKnown RBP16.01■□□□□ 0.15
NPLOC4-202ENST00000374747 MPHOSPH9Q99550 1183 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms