RNA–Protein interactions for RNA: ENST00000374673.3

HSPG2-201, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 3

Gene HSPG2, Length 538 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-201ENST00000374673 SHROOM2Q13796 1616 aa24.83■■□□□ 1.57
HSPG2-201ENST00000374673 CTTNBP2Q8WZ74 1663 aa24.83■■□□□ 1.57
HSPG2-201ENST00000374673 IQGAP2Q13576 1575 aa24.77■■□□□ 1.56
HSPG2-201ENST00000374673 ARHGEF11O15085 1522 aa24.76■■□□□ 1.55
HSPG2-201ENST00000374673 RIMBP3CA6NJZ7 1639 aa24.75■■□□□ 1.55
HSPG2-201ENST00000374673 RIMBP3BA6NNM3 1639 aa24.75■■□□□ 1.55
HSPG2-201ENST00000374673 RIMBP3Q9UFD9 1639 aa24.75■■□□□ 1.55
HSPG2-201ENST00000374673 GOLGA3Q08378 1498 aa24.73■■□□□ 1.55
HSPG2-201ENST00000374673 JPH4Q96JJ6 628 aa24.71■■□□□ 1.55
HSPG2-201ENST00000374673 ERCC6L2Q5T890 1561 aa24.66■■□□□ 1.54
HSPG2-201ENST00000374673 UGGT2Q9NYU1 1516 aa24.66■■□□□ 1.54
HSPG2-201ENST00000374673 PRG4Q92954 1404 aaPredicted RBP24.65■■□□□ 1.54
HSPG2-201ENST00000374673 ARAP1Q96P48 1450 aa24.58■■□□□ 1.53
HSPG2-201ENST00000374673 DISP1Q96F81 1524 aa24.56■■□□□ 1.52
HSPG2-201ENST00000374673 UBTFP17480 764 aaKnown RBP24.56■■□□□ 1.52
HSPG2-201ENST00000374673 EHMT2Q96KQ7 1210 aa24.56■■□□□ 1.52
HSPG2-201ENST00000374673 CARMIL2Q6F5E8 1435 aa24.55■■□□□ 1.52
HSPG2-201ENST00000374673 KIAA0556O60303 1618 aa24.55■■□□□ 1.52
HSPG2-201ENST00000374673 SAMD9Q5K651 1589 aa24.5■■□□□ 1.51
HSPG2-201ENST00000374673 TNIKQ9UKE5 1360 aa24.46■■□□□ 1.51
HSPG2-201ENST00000374673 EFCAB5A4FU69 1503 aa24.45■■□□□ 1.5
HSPG2-201ENST00000374673 CYB5RLQ6IPT4 315 aa24.43■■□□□ 1.5
HSPG2-201ENST00000374673 PTPRGP23470 1445 aa24.39■■□□□ 1.5
HSPG2-201ENST00000374673 LOC105371045A0A1W2PR82 267 aa24.35■■□□□ 1.49
HSPG2-201ENST00000374673 RANGAP1P46060 587 aaPredicted RBP24.35■■□□□ 1.49
HSPG2-201ENST00000374673 ARHGAP35Q9NRY4 1499 aa24.34■■□□□ 1.49
HSPG2-201ENST00000374673 P3H3Q8IVL6 736 aa24.31■■□□□ 1.48
HSPG2-201ENST00000374673 FHOD3Q2V2M9 1422 aa24.3■■□□□ 1.48
HSPG2-201ENST00000374673 ADCY10Q96PN6 1610 aa24.28■■□□□ 1.48
HSPG2-201ENST00000374673 TTBK1Q5TCY1 1321 aaPredicted RBP24.28■■□□□ 1.48
HSPG2-201ENST00000374673 CLIP1P30622 1438 aa24.27■■□□□ 1.48
HSPG2-201ENST00000374673 UACAQ9BZF9 1416 aa24.27■■□□□ 1.48
HSPG2-201ENST00000374673 ABCA8O94911 1581 aa24.26■■□□□ 1.47
HSPG2-201ENST00000374673 UHRF1BP1LA0JNW5 1464 aa24.26■■□□□ 1.47
HSPG2-201ENST00000374673 ABCC2Q92887 1545 aa24.25■■□□□ 1.47
HSPG2-201ENST00000374673 CEP162Q5TB80 1403 aa24.24■■□□□ 1.47
HSPG2-201ENST00000374673 PLB1Q6P1J6 1458 aa24.22■■□□□ 1.47
HSPG2-201ENST00000374673 RAPGEF6Q8TEU7 1601 aa24.2■■□□□ 1.46
HSPG2-201ENST00000374673 FMN1Q68DA7 1419 aa24.18■■□□□ 1.46
HSPG2-201ENST00000374673 KDM5BQ9UGL1 1544 aa24.13■■□□□ 1.45
HSPG2-201ENST00000374673 ZCCHC11Q5TAX3 1644 aaKnown RBP24.1■■□□□ 1.45
HSPG2-201ENST00000374673 NPM1P06748 294 aaKnown RBP eCLIP24.09■■□□□ 1.45
HSPG2-201ENST00000374673 MAPKBP1O60336 1514 aa24.09■■□□□ 1.45
HSPG2-201ENST00000374673 NUP153P49790 1475 aaKnown RBP24.07■■□□□ 1.44
HSPG2-201ENST00000374673 HECW1Q76N89 1606 aa24.06■■□□□ 1.44
HSPG2-201ENST00000374673 PCF11O94913 1555 aaKnown RBP24.05■■□□□ 1.44
HSPG2-201ENST00000374673 CASKIN1Q8WXD9 1431 aa24.02■■□□□ 1.44
HSPG2-201ENST00000374673 ATP10BO94823 1461 aa24.01■■□□□ 1.43
HSPG2-201ENST00000374673 FYCO1Q9BQS8 1478 aa24■■□□□ 1.43
HSPG2-201ENST00000374673 LRRIQ1Q96JM4 1722 aa23.98■■□□□ 1.43
HSPG2-201ENST00000374673 EPRSP07814 1512 aaKnown RBP23.96■■□□□ 1.43
HSPG2-201ENST00000374673 ASXL2Q76L83 1435 aa23.96■■□□□ 1.43
HSPG2-201ENST00000374673 VPS8Q8N3P4 1428 aa23.94■■□□□ 1.42
HSPG2-201ENST00000374673 ARID3CA6NKF2 412 aa23.93■■□□□ 1.42
HSPG2-201ENST00000374673 CDK13Q14004 1512 aaKnown RBP23.93■■□□□ 1.42
HSPG2-201ENST00000374673 CCDC18Q5T9S5 1454 aa23.92■■□□□ 1.42
HSPG2-201ENST00000374673 ATP1B4Q9UN42 357 aaPredicted RBP23.91■■□□□ 1.42
HSPG2-201ENST00000374673 WDR7Q9Y4E6 1490 aa23.91■■□□□ 1.42
HSPG2-201ENST00000374673 KIF13AQ9H1H9 1805 aa23.91■■□□□ 1.42
HSPG2-201ENST00000374673 DIP2BQ9P265 1576 aa23.91■■□□□ 1.42
HSPG2-201ENST00000374673 ABCC10Q5T3U5 1492 aa23.9■■□□□ 1.42
HSPG2-201ENST00000374673 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.87■■□□□ 1.41
HSPG2-201ENST00000374673 HNRNPUL2Q1KMD3 747 aaKnown RBP23.87■■□□□ 1.41
HSPG2-201ENST00000374673 GLI2P10070 1586 aa23.84■■□□□ 1.41
HSPG2-201ENST00000374673 TRHP20396 242 aaPredicted RBP23.81■■□□□ 1.4
HSPG2-201ENST00000374673 CFAP43Q8NDM7 1665 aa23.8■■□□□ 1.4
HSPG2-201ENST00000374673 PLEKHD1A6NEE1 506 aa23.8■■□□□ 1.4
HSPG2-201ENST00000374673 CDK11AQ9UQ88 783 aaPredicted RBP23.78■■□□□ 1.4
HSPG2-201ENST00000374673 FAM69CQ0P6D2 419 aa23.77■■□□□ 1.4
HSPG2-201ENST00000374673 TIAM1Q13009 1591 aa23.75■■□□□ 1.39
HSPG2-201ENST00000374673 MAP3K4Q9Y6R4 1608 aa23.75■■□□□ 1.39
HSPG2-201ENST00000374673 TROQ12816 1431 aaPredicted RBP23.75■■□□□ 1.39
HSPG2-201ENST00000374673 MAGI3Q5TCQ9 1506 aa23.74■■□□□ 1.39
HSPG2-201ENST00000374673 ABCA9Q8IUA7 1624 aa23.74■■□□□ 1.39
HSPG2-201ENST00000374673 MAP3K1Q13233 1512 aa23.74■■□□□ 1.39
HSPG2-201ENST00000374673 KCNH8Q96L42 1107 aa23.73■■□□□ 1.39
HSPG2-201ENST00000374673 KIF14Q15058 1648 aa23.7■■□□□ 1.39
HSPG2-201ENST00000374673 TSPOAP1O95153 1857 aa23.68■■□□□ 1.38
HSPG2-201ENST00000374673 EHBP1L1Q8N3D4 1523 aa23.68■■□□□ 1.38
HSPG2-201ENST00000374673 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.68■■□□□ 1.38
HSPG2-201ENST00000374673 PPRC1Q5VV67 1664 aaKnown RBP23.67■■□□□ 1.38
HSPG2-201ENST00000374673 TTC37Q6PGP7 1564 aa23.65■■□□□ 1.38
HSPG2-201ENST00000374673 MTUS2Q5JR59 1369 aa23.65■■□□□ 1.38
HSPG2-201ENST00000374673 CD109Q6YHK3 1445 aa23.63■■□□□ 1.37
HSPG2-201ENST00000374673 LRRC9Q6ZRR7 1453 aa23.62■■□□□ 1.37
HSPG2-201ENST00000374673 APLP2Q06481 763 aa23.6■■□□□ 1.37
HSPG2-201ENST00000374673 MYO5CQ9NQX4 1742 aa23.59■■□□□ 1.37
HSPG2-201ENST00000374673 TEX14Q8IWB6 1497 aa23.58■■□□□ 1.37
HSPG2-201ENST00000374673 SUPT6HQ7KZ85 1726 aaKnown RBP23.58■■□□□ 1.37
HSPG2-201ENST00000374673 ARAP3Q8WWN8 1544 aa23.54■■□□□ 1.36
HSPG2-201ENST00000374673 CDC42BPAQ5VT25 1732 aa23.53■■□□□ 1.36
HSPG2-201ENST00000374673 PREX2Q70Z35 1606 aa23.53■■□□□ 1.36
HSPG2-201ENST00000374673 KANK4Q5T7N3 995 aaPredicted RBP23.53■■□□□ 1.36
HSPG2-201ENST00000374673 PLCH2O75038 1416 aa23.52■■□□□ 1.36
HSPG2-201ENST00000374673 CDC42BPBQ9Y5S2 1711 aa23.51■■□□□ 1.35
HSPG2-201ENST00000374673 CFAP74Q9C0B2 1584 aa23.51■■□□□ 1.35
HSPG2-201ENST00000374673 NCOA2Q15596 1464 aa23.5■■□□□ 1.35
HSPG2-201ENST00000374673 ITSN2Q9NZM3 1697 aa23.48■■□□□ 1.35
HSPG2-201ENST00000374673 NEO1Q92859 1461 aa23.48■■□□□ 1.35
HSPG2-201ENST00000374673 FANCAO15360 1455 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms