RNA–Protein interactions for RNA: ENST00000374379.8

CLIC4-201, Transcript of chloride intracellular channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIC4, Length 4,346 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIC4-201ENST00000374379 FHOD3Q2V2M9 1422 aa19.03■□□□□ 0.64
CLIC4-201ENST00000374379 IGF1RP08069 1367 aa19.01■□□□□ 0.63
CLIC4-201ENST00000374379 FANCD2Q9BXW9 1451 aa19.01■□□□□ 0.63
CLIC4-201ENST00000374379 RAD54L2Q9Y4B4 1467 aa18.99■□□□□ 0.63
CLIC4-201ENST00000374379 FHAD1B1AJZ9 1412 aa18.98■□□□□ 0.63
CLIC4-201ENST00000374379 FGD5Q6ZNL6 1462 aa18.97■□□□□ 0.63
CLIC4-201ENST00000374379 DNAJC5BQ9UF47 199 aa18.96■□□□□ 0.63
CLIC4-201ENST00000374379 RAB3GAP2Q9H2M9 1393 aa18.95■□□□□ 0.62
CLIC4-201ENST00000374379 KIF21BO75037 1637 aa18.94■□□□□ 0.62
CLIC4-201ENST00000374379 NESP48681 1621 aa18.92■□□□□ 0.62
CLIC4-201ENST00000374379 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.91■□□□□ 0.623e-6■■□□□ 11.6
CLIC4-201ENST00000374379 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
CLIC4-201ENST00000374379 SLC4A1APQ9BWU0 796 aaKnown RBP18.91■□□□□ 0.62
CLIC4-201ENST00000374379 CFTRP13569 1480 aa18.91■□□□□ 0.62
CLIC4-201ENST00000374379 ERCC6Q03468 1493 aa18.9■□□□□ 0.62
CLIC4-201ENST00000374379 CUX1P39880 1505 aa18.89■□□□□ 0.62
CLIC4-201ENST00000374379 ARAP1Q96P48 1450 aa18.89■□□□□ 0.61
CLIC4-201ENST00000374379 KDM2AQ9Y2K7 1162 aa18.88■□□□□ 0.61
CLIC4-201ENST00000374379 FOXD1Q16676 465 aa18.87■□□□□ 0.61
CLIC4-201ENST00000374379 ERICH6Q7L0X2 663 aa18.87■□□□□ 0.61
CLIC4-201ENST00000374379 KCNH8Q96L42 1107 aa18.86■□□□□ 0.61
CLIC4-201ENST00000374379 SETD5Q9C0A6 1442 aa18.86■□□□□ 0.61
CLIC4-201ENST00000374379 CFDP1Q9UEE9 299 aaPredicted RBP18.86■□□□□ 0.61
CLIC4-201ENST00000374379 DHX57Q6P158 1386 aaKnown RBP18.86■□□□□ 0.61
CLIC4-201ENST00000374379 CLSPNQ9HAW4 1339 aa18.86■□□□□ 0.61
CLIC4-201ENST00000374379 HNRNPUQ00839 825 aaKnown RBP eCLIP18.85■□□□□ 0.61
CLIC4-201ENST00000374379 SENP3-EIF4A1A0A087X0R7 540 aa18.84■□□□□ 0.61
CLIC4-201ENST00000374379 FKBP8Q14318 412 aa18.84■□□□□ 0.61
CLIC4-201ENST00000374379 FAM9BQ8IZU0 186 aa18.84■□□□□ 0.61
CLIC4-201ENST00000374379 TOP2BQ02880 1626 aa18.83■□□□□ 0.6
CLIC4-201ENST00000374379 ARHGAP35Q9NRY4 1499 aa18.83■□□□□ 0.6
CLIC4-201ENST00000374379 TSPY4P0CV99 314 aa18.83■□□□□ 0.6
CLIC4-201ENST00000374379 TSPY10P0CW01 314 aa18.83■□□□□ 0.6
CLIC4-201ENST00000374379 PLEKHD1A6NEE1 506 aa18.81■□□□□ 0.6
CLIC4-201ENST00000374379 PRXQ9BXM0 1461 aa18.81■□□□□ 0.6
CLIC4-201ENST00000374379 CC2D2AQ9P2K1 1620 aa18.77■□□□□ 0.6
CLIC4-201ENST00000374379 FMN1Q68DA7 1419 aa18.76■□□□□ 0.59
CLIC4-201ENST00000374379 HMGXB3Q12766 1538 aa18.76■□□□□ 0.59
CLIC4-201ENST00000374379 EIF4G2P78344 907 aaKnown RBP eCLIP18.75■□□□□ 0.598e-7■■■■■ 28.7
CLIC4-201ENST00000374379 PEG3Q9GZU2 1588 aa18.75■□□□□ 0.59
CLIC4-201ENST00000374379 PHLDB1Q86UU1 1377 aa18.73■□□□□ 0.59
CLIC4-201ENST00000374379 IRX6P78412 446 aaPredicted RBP18.73■□□□□ 0.59
CLIC4-201ENST00000374379 RGL3Q3MIN7 710 aa18.72■□□□□ 0.59
CLIC4-201ENST00000374379 SALL2Q9Y467 1007 aaPredicted RBP18.72■□□□□ 0.59
CLIC4-201ENST00000374379 AQRO60306 1485 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLIC4-201ENST00000374379 GAPVD1Q14C86 1478 aa18.68■□□□□ 0.58
CLIC4-201ENST00000374379 MRS2Q9HD23 443 aa18.68■□□□□ 0.58
CLIC4-201ENST00000374379 ERICH3Q5RHP9 1530 aa18.67■□□□□ 0.58
CLIC4-201ENST00000374379 SENP3Q9H4L4 574 aaPredicted RBP18.64■□□□□ 0.57
CLIC4-201ENST00000374379 PPP1R15AO75807 674 aaPredicted RBP18.64■□□□□ 0.57
CLIC4-201ENST00000374379 CHGAP10645 457 aaKnown RBP18.63■□□□□ 0.57
CLIC4-201ENST00000374379 POLA1P09884 1462 aaPredicted RBP18.63■□□□□ 0.57
CLIC4-201ENST00000374379 TOPBP1Q92547 1522 aa18.6■□□□□ 0.57
CLIC4-201ENST00000374379 MPHOSPH9Q99550 1183 aa18.6■□□□□ 0.57
CLIC4-201ENST00000374379 LRRC9Q6ZRR7 1453 aa18.59■□□□□ 0.57
CLIC4-201ENST00000374379 JPH4Q96JJ6 628 aa18.58■□□□□ 0.56
CLIC4-201ENST00000374379 HSPA5P11021 654 aaKnown RBP18.57■□□□□ 0.56
CLIC4-201ENST00000374379 ZNF644Q9H582 1327 aaPredicted RBP18.56■□□□□ 0.56
CLIC4-201ENST00000374379 TMC1Q8TDI8 760 aa18.54■□□□□ 0.56
CLIC4-201ENST00000374379 L3MBTL2Q969R5 705 aa18.53■□□□□ 0.56
CLIC4-201ENST00000374379 PKD2Q13563 968 aa18.53■□□□□ 0.56
CLIC4-201ENST00000374379 TIMELESSQ9UNS1 1208 aa18.51■□□□□ 0.55
CLIC4-201ENST00000374379 RRBP1Q9P2E9 1410 aaKnown RBP18.51■□□□□ 0.55
CLIC4-201ENST00000374379 CARD11Q9BXL7 1154 aa18.51■□□□□ 0.55
CLIC4-201ENST00000374379 NPM1P06748 294 aaKnown RBP eCLIP18.5■□□□□ 0.55
CLIC4-201ENST00000374379 HNRNPMP52272 730 aaKnown RBP eCLIP18.49■□□□□ 0.55
CLIC4-201ENST00000374379 SUPT16HQ9Y5B9 1047 aaKnown RBP18.49■□□□□ 0.55
CLIC4-201ENST00000374379 FGD6Q6ZV73 1430 aa18.48■□□□□ 0.55
CLIC4-201ENST00000374379 DCAF11Q8TEB1 546 aa18.48■□□□□ 0.55
CLIC4-201ENST00000374379 CCDC18Q5T9S5 1454 aa18.45■□□□□ 0.54
CLIC4-201ENST00000374379 CARMIL2Q6F5E8 1435 aa18.45■□□□□ 0.54
CLIC4-201ENST00000374379 CASKIN1Q8WXD9 1431 aa18.45■□□□□ 0.54
CLIC4-201ENST00000374379 BIVM-ERCC5R4GMW8 1640 aa18.44■□□□□ 0.54
CLIC4-201ENST00000374379 DNMBPQ6XZF7 1577 aa18.41■□□□□ 0.54
CLIC4-201ENST00000374379 NUP155O75694 1391 aa18.4■□□□□ 0.54
CLIC4-201ENST00000374379 TIAM1Q13009 1591 aa18.4■□□□□ 0.54
CLIC4-201ENST00000374379 NCOA2Q15596 1464 aa18.4■□□□□ 0.54
CLIC4-201ENST00000374379 MYOM3Q5VTT5 1437 aa18.39■□□□□ 0.53
CLIC4-201ENST00000374379 ABCA10Q8WWZ4 1543 aa18.37■□□□□ 0.53
CLIC4-201ENST00000374379 URB2Q14146 1524 aaKnown RBP18.35■□□□□ 0.53
CLIC4-201ENST00000374379 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
CLIC4-201ENST00000374379 FYCO1Q9BQS8 1478 aa18.34■□□□□ 0.53
CLIC4-201ENST00000374379 PCF11O94913 1555 aaKnown RBP18.32■□□□□ 0.52
CLIC4-201ENST00000374379 GRIN2BQ13224 1484 aa18.3■□□□□ 0.52
CLIC4-201ENST00000374379 ANKRD30AQ9BXX3 1397 aa18.3■□□□□ 0.52
CLIC4-201ENST00000374379 CCER2I3L3R5 266 aa18.3■□□□□ 0.52
CLIC4-201ENST00000374379 PRDM2Q13029 1718 aa18.29■□□□□ 0.52
CLIC4-201ENST00000374379 CC2D1BQ5T0F9 858 aaKnown RBP18.29■□□□□ 0.52
CLIC4-201ENST00000374379 CCDC136Q96JN2 1154 aa18.26■□□□□ 0.51
CLIC4-201ENST00000374379 UACAQ9BZF9 1416 aa18.26■□□□□ 0.51
CLIC4-201ENST00000374379 STAG3Q9UJ98 1225 aa18.25■□□□□ 0.51
CLIC4-201ENST00000374379 PTPRGP23470 1445 aa18.25■□□□□ 0.51
CLIC4-201ENST00000374379 MRC2Q9UBG0 1479 aa18.25■□□□□ 0.51
CLIC4-201ENST00000374379 NPM2Q86SE8 214 aaKnown RBP18.24■□□□□ 0.51
CLIC4-201ENST00000374379 CDK13Q14004 1512 aaKnown RBP18.24■□□□□ 0.51
CLIC4-201ENST00000374379 DAXXQ9UER7 740 aaPredicted RBP18.24■□□□□ 0.51
CLIC4-201ENST00000374379 EFCAB5A4FU69 1503 aa18.24■□□□□ 0.51
CLIC4-201ENST00000374379 BCL11AQ9H165 835 aa18.23■□□□□ 0.51
CLIC4-201ENST00000374379 PRG4Q92954 1404 aaPredicted RBP18.22■□□□□ 0.51
CLIC4-201ENST00000374379 SNAPC4Q5SXM2 1469 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms