RNA–Protein interactions for RNA: ENST00000368226.8

PTPRK-207, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PTPRK, Length 6,087 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-207ENST00000368226 ARXQ96QS3 562 aa17.31■□□□□ 0.36
PTPRK-207ENST00000368226 PLEKHD1A6NEE1 506 aa17.29■□□□□ 0.36
PTPRK-207ENST00000368226 RB1CC1Q8TDY2 1594 aa17.29■□□□□ 0.36
PTPRK-207ENST00000368226 CCDC136Q96JN2 1154 aa17.29■□□□□ 0.36
PTPRK-207ENST00000368226 DCAF1Q9Y4B6 1507 aa17.28■□□□□ 0.36
PTPRK-207ENST00000368226 UPF2Q9HAU5 1272 aaKnown RBP17.27■□□□□ 0.35
PTPRK-207ENST00000368226 MIER1Q8N108 512 aa17.25■□□□□ 0.35
PTPRK-207ENST00000368226 PPM1GO15355 546 aaPredicted RBP17.24■□□□□ 0.35
PTPRK-207ENST00000368226 MYO15BQ96JP2 1530 aa17.23■□□□□ 0.35
PTPRK-207ENST00000368226 CCDC180Q9P1Z9 1646 aa17.23■□□□□ 0.35
PTPRK-207ENST00000368226 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.22■□□□□ 0.35
PTPRK-207ENST00000368226 EIF4G2P78344 907 aaKnown RBP eCLIP17.21■□□□□ 0.35
PTPRK-207ENST00000368226 NBR1Q14596 966 aa17.21■□□□□ 0.35
PTPRK-207ENST00000368226 BAZ1BQ9UIG0 1483 aaKnown RBP17.21■□□□□ 0.35
PTPRK-207ENST00000368226 HAP1P54257 671 aaPredicted RBP17.2■□□□□ 0.34
PTPRK-207ENST00000368226 ERCC6Q03468 1493 aa17.2■□□□□ 0.34
PTPRK-207ENST00000368226 CFDP1Q9UEE9 299 aaPredicted RBP17.2■□□□□ 0.34
PTPRK-207ENST00000368226 CEP162Q5TB80 1403 aa17.19■□□□□ 0.34
PTPRK-207ENST00000368226 RSF1Q96T23 1441 aaPredicted RBP17.18■□□□□ 0.34
PTPRK-207ENST00000368226 GOLGA3Q08378 1498 aa17.16■□□□□ 0.34
PTPRK-207ENST00000368226 WRNQ14191 1432 aaPredicted RBP eCLIP17.16■□□□□ 0.34
PTPRK-207ENST00000368226 LMOD2Q6P5Q4 547 aa17.15■□□□□ 0.34
PTPRK-207ENST00000368226 ANP32BQ92688 251 aaKnown RBP17.15■□□□□ 0.34
PTPRK-207ENST00000368226 TNNT2P45379 298 aaPredicted RBP17.12■□□□□ 0.33
PTPRK-207ENST00000368226 NEUROD2Q15784 382 aa17.12■□□□□ 0.33
PTPRK-207ENST00000368226 MYH16Q9H6N6 1097 aa17.12■□□□□ 0.33
PTPRK-207ENST00000368226 MLECQ14165 292 aa17.1■□□□□ 0.33
PTPRK-207ENST00000368226 LAS1LQ9Y4W2 734 aaKnown RBP17.1■□□□□ 0.33
PTPRK-207ENST00000368226 SIN3AQ96ST3 1273 aa17.09■□□□□ 0.33
PTPRK-207ENST00000368226 CARD11Q9BXL7 1154 aa17.09■□□□□ 0.33
PTPRK-207ENST00000368226 TRHP20396 242 aaPredicted RBP17.09■□□□□ 0.33
PTPRK-207ENST00000368226 EIF4G1Q04637 1599 aaKnown RBP17.08■□□□□ 0.32
PTPRK-207ENST00000368226 EIF5BO60841 1220 aaKnown RBP17.07■□□□□ 0.32
PTPRK-207ENST00000368226 KIF27Q86VH2 1401 aa17.06■□□□□ 0.32
PTPRK-207ENST00000368226 KNSTRNQ9Y448 316 aa17.05■□□□□ 0.32
PTPRK-207ENST00000368226 POGKQ9P215 609 aa17.03■□□□□ 0.32
PTPRK-207ENST00000368226 TPRNQ4KMQ1 711 aa17.03■□□□□ 0.32
PTPRK-207ENST00000368226 CC2D1BQ5T0F9 858 aaKnown RBP17.02■□□□□ 0.32
PTPRK-207ENST00000368226 SOX12O15370 315 aa17.02■□□□□ 0.31
PTPRK-207ENST00000368226 CFAP53Q96M91 514 aa16.99■□□□□ 0.31
PTPRK-207ENST00000368226 SAFB2Q14151 953 aaKnown RBP eCLIP16.98■□□□□ 0.31
PTPRK-207ENST00000368226 TAOK2Q9UL54 1235 aa16.98■□□□□ 0.31
PTPRK-207ENST00000368226 NACADO15069 1562 aa16.96■□□□□ 0.31
PTPRK-207ENST00000368226 EEA1Q15075 1411 aa16.94■□□□□ 0.3
PTPRK-207ENST00000368226 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
PTPRK-207ENST00000368226 CEP164Q9UPV0 1460 aa16.94■□□□□ 0.3
PTPRK-207ENST00000368226 U2SURPO15042 1029 aaKnown RBP16.93■□□□□ 0.3
PTPRK-207ENST00000368226 CCNB3Q8WWL7 1395 aa16.93■□□□□ 0.3
PTPRK-207ENST00000368226 FTSJ3Q8IY81 847 aaKnown RBP16.93■□□□□ 0.3
PTPRK-207ENST00000368226 SUPT16HQ9Y5B9 1047 aaKnown RBP16.92■□□□□ 0.3
PTPRK-207ENST00000368226 MAPK8IP3Q9UPT6 1336 aa16.92■□□□□ 0.3
PTPRK-207ENST00000368226 DCAF11Q8TEB1 546 aa16.92■□□□□ 0.3
PTPRK-207ENST00000368226 FRAT1Q92837 279 aaPredicted RBP16.92■□□□□ 0.3
PTPRK-207ENST00000368226 TULP1O00294 542 aaPredicted RBP16.91■□□□□ 0.3
PTPRK-207ENST00000368226 CUX2O14529 1486 aa16.9■□□□□ 0.3
PTPRK-207ENST00000368226 TNIKQ9UKE5 1360 aa16.9■□□□□ 0.3
PTPRK-207ENST00000368226 CDCA8Q53HL2 280 aa16.9■□□□□ 0.3
PTPRK-207ENST00000368226 NPHP1O15259 732 aa16.89■□□□□ 0.29
PTPRK-207ENST00000368226 FOXD1Q16676 465 aa16.88■□□□□ 0.29
PTPRK-207ENST00000368226 SOGA1O94964 1423 aa16.88■□□□□ 0.29
PTPRK-207ENST00000368226 GGT6Q6P531 493 aa16.88■□□□□ 0.29
PTPRK-207ENST00000368226 STK26Q9P289 416 aa16.86■□□□□ 0.29
PTPRK-207ENST00000368226 CARMIL1Q5VZK9 1371 aa16.85■□□□□ 0.29
PTPRK-207ENST00000368226 NCLP19338 710 aaKnown RBP16.85■□□□□ 0.29
PTPRK-207ENST00000368226 SRPK2P78362 688 aaKnown RBP16.84■□□□□ 0.29
PTPRK-207ENST00000368226 RGS3P49796 1198 aa16.84■□□□□ 0.29
PTPRK-207ENST00000368226 NUDCQ9Y266 331 aa16.82■□□□□ 0.28
PTPRK-207ENST00000368226 BAZ1AQ9NRL2 1556 aaPredicted RBP16.81■□□□□ 0.28
PTPRK-207ENST00000368226 ABCC8Q09428 1581 aa16.78■□□□□ 0.28
PTPRK-207ENST00000368226 OS9Q13438 667 aaPredicted RBP16.78■□□□□ 0.28
PTPRK-207ENST00000368226 BECN1Q14457 450 aa16.78■□□□□ 0.28
PTPRK-207ENST00000368226 CDK11BP21127 795 aaKnown RBP16.78■□□□□ 0.28
PTPRK-207ENST00000368226 KANK1Q14678 1352 aa16.77■□□□□ 0.28
PTPRK-207ENST00000368226 TMF1P82094 1093 aa16.75■□□□□ 0.27
PTPRK-207ENST00000368226 CASC1Q6TDU7 716 aa16.75■□□□□ 0.27
PTPRK-207ENST00000368226 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
PTPRK-207ENST00000368226 NUTM2DQ5VT03 806 aaPredicted RBP16.74■□□□□ 0.27
PTPRK-207ENST00000368226 TDRD9Q8NDG6 1382 aaKnown RBP16.74■□□□□ 0.27
PTPRK-207ENST00000368226 PAK3O75914 559 aaPredicted RBP16.73■□□□□ 0.27
PTPRK-207ENST00000368226 PKD2Q13563 968 aa16.73■□□□□ 0.27
PTPRK-207ENST00000368226 DDRGK1Q96HY6 314 aa16.72■□□□□ 0.27
PTPRK-207ENST00000368226 FHAD1B1AJZ9 1412 aa16.72■□□□□ 0.27
PTPRK-207ENST00000368226 NAP1L2Q9ULW6 460 aaPredicted RBP16.71■□□□□ 0.27
PTPRK-207ENST00000368226 MORC1Q86VD1 984 aa16.71■□□□□ 0.27
PTPRK-207ENST00000368226 B4GALNT3Q6L9W6 998 aa16.7■□□□□ 0.26
PTPRK-207ENST00000368226 HSPA5P11021 654 aaKnown RBP16.68■□□□□ 0.26
PTPRK-207ENST00000368226 CCDC88BA6NC98 1476 aa16.67■□□□□ 0.26
PTPRK-207ENST00000368226 GOLGA6L22H0YM25 854 aa16.66■□□□□ 0.26
PTPRK-207ENST00000368226 APBB1O00213 710 aa16.66■□□□□ 0.26
PTPRK-207ENST00000368226 ZNF330Q9Y3S2 320 aaPredicted RBP16.66■□□□□ 0.26
PTPRK-207ENST00000368226 ARHGAP35Q9NRY4 1499 aa16.66■□□□□ 0.26
PTPRK-207ENST00000368226 MROH2BQ7Z745 1585 aa16.66■□□□□ 0.26
PTPRK-207ENST00000368226 GOLGA2Q08379 1002 aa16.65■□□□□ 0.26
PTPRK-207ENST00000368226 ZRSR1Q15695 479 aaKnown RBP16.65■□□□□ 0.26
PTPRK-207ENST00000368226 FGD1P98174 961 aa16.64■□□□□ 0.25
PTPRK-207ENST00000368226 KCNJ4P48050 445 aa16.64■□□□□ 0.25
PTPRK-207ENST00000368226 TRIM44Q96DX7 344 aaPredicted RBP16.63■□□□□ 0.25
PTPRK-207ENST00000368226 HDGFP51858 240 aaKnown RBP16.63■□□□□ 0.25
PTPRK-207ENST00000368226 HNRNPMP52272 730 aaKnown RBP eCLIP16.62■□□□□ 0.252e-6■■■□□ 18
PTPRK-207ENST00000368226 SPRYD3Q8NCJ5 442 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms