RNA–Protein interactions for RNA: ENST00000368210.7

PTPRK-204, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPRK, Length 5,025 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-204ENST00000368210 KDM2AQ9Y2K7 1162 aa17.93■□□□□ 0.46
PTPRK-204ENST00000368210 PLEKHD1A6NEE1 506 aa17.91■□□□□ 0.46
PTPRK-204ENST00000368210 EIF4G2P78344 907 aaKnown RBP eCLIP17.91■□□□□ 0.46
PTPRK-204ENST00000368210 ABCC8Q09428 1581 aa17.9■□□□□ 0.46
PTPRK-204ENST00000368210 TMC1Q8TDI8 760 aa17.9■□□□□ 0.46
PTPRK-204ENST00000368210 ZBTB47Q9UFB7 747 aaPredicted RBP17.89■□□□□ 0.45
PTPRK-204ENST00000368210 MRS2Q9HD23 443 aa17.89■□□□□ 0.45
PTPRK-204ENST00000368210 CARMIL1Q5VZK9 1371 aa17.88■□□□□ 0.45
PTPRK-204ENST00000368210 CUX2O14529 1486 aa17.88■□□□□ 0.45
PTPRK-204ENST00000368210 ESF1Q9H501 851 aaKnown RBP17.87■□□□□ 0.45
PTPRK-204ENST00000368210 NBR1Q14596 966 aa17.86■□□□□ 0.45
PTPRK-204ENST00000368210 STAG3Q9UJ98 1225 aa17.85■□□□□ 0.45
PTPRK-204ENST00000368210 CFDP1Q9UEE9 299 aaPredicted RBP17.84■□□□□ 0.45
PTPRK-204ENST00000368210 SALL2Q9Y467 1007 aaPredicted RBP17.84■□□□□ 0.45
PTPRK-204ENST00000368210 FHAD1B1AJZ9 1412 aa17.83■□□□□ 0.45
PTPRK-204ENST00000368210 CCNB3Q8WWL7 1395 aa17.83■□□□□ 0.44
PTPRK-204ENST00000368210 SMARCA2P51531 1590 aa17.83■□□□□ 0.44
PTPRK-204ENST00000368210 WIZO95785 1651 aa17.82■□□□□ 0.44
PTPRK-204ENST00000368210 KCNH8Q96L42 1107 aa17.82■□□□□ 0.44
PTPRK-204ENST00000368210 VPS8Q8N3P4 1428 aa17.82■□□□□ 0.44
PTPRK-204ENST00000368210 TOP2AP11388 1531 aaKnown RBP17.8■□□□□ 0.44
PTPRK-204ENST00000368210 SLC24A1O60721 1099 aa17.79■□□□□ 0.44
PTPRK-204ENST00000368210 SIN3AQ96ST3 1273 aa17.78■□□□□ 0.44
PTPRK-204ENST00000368210 NPM2Q86SE8 214 aaKnown RBP17.73■□□□□ 0.43
PTPRK-204ENST00000368210 RGL3Q3MIN7 710 aa17.72■□□□□ 0.43
PTPRK-204ENST00000368210 WDR43Q15061 677 aaKnown RBP eCLIP17.71■□□□□ 0.43
PTPRK-204ENST00000368210 CCDC136Q96JN2 1154 aa17.71■□□□□ 0.43
PTPRK-204ENST00000368210 KANK4Q5T7N3 995 aaPredicted RBP17.71■□□□□ 0.43
PTPRK-204ENST00000368210 ERCC6Q03468 1493 aa17.7■□□□□ 0.42
PTPRK-204ENST00000368210 IRX6P78412 446 aaPredicted RBP17.66■□□□□ 0.42
PTPRK-204ENST00000368210 EIF4G1Q04637 1599 aaKnown RBP17.64■□□□□ 0.41
PTPRK-204ENST00000368210 ANP32BQ92688 251 aaKnown RBP17.64■□□□□ 0.41
PTPRK-204ENST00000368210 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.63■□□□□ 0.41
PTPRK-204ENST00000368210 TIMELESSQ9UNS1 1208 aa17.63■□□□□ 0.41
PTPRK-204ENST00000368210 ATAD2BQ9ULI0 1458 aa17.63■□□□□ 0.41
PTPRK-204ENST00000368210 PLPPR3Q6T4P5 718 aa17.62■□□□□ 0.41
PTPRK-204ENST00000368210 CARD11Q9BXL7 1154 aa17.62■□□□□ 0.41
PTPRK-204ENST00000368210 ERICH6BQ5W0A0 696 aa17.61■□□□□ 0.41
PTPRK-204ENST00000368210 SETD5Q9C0A6 1442 aa17.61■□□□□ 0.41
PTPRK-204ENST00000368210 SMARCA4P51532 1647 aa17.6■□□□□ 0.41
PTPRK-204ENST00000368210 TDRD9Q8NDG6 1382 aaKnown RBP17.6■□□□□ 0.41
PTPRK-204ENST00000368210 PDS5BQ9NTI5 1447 aa17.59■□□□□ 0.41
PTPRK-204ENST00000368210 PRKCSHP14314 528 aaPredicted RBP17.58■□□□□ 0.41
PTPRK-204ENST00000368210 CADPSQ9ULU8 1353 aa17.58■□□□□ 0.41
PTPRK-204ENST00000368210 ARHGAP35Q9NRY4 1499 aa17.58■□□□□ 0.4
PTPRK-204ENST00000368210 DEKP35659 375 aaKnown RBP17.57■□□□□ 0.4
PTPRK-204ENST00000368210 RTN4Q9NQC3 1192 aaKnown RBP17.57■□□□□ 0.4
PTPRK-204ENST00000368210 TNNT2P45379 298 aaPredicted RBP17.56■□□□□ 0.4
PTPRK-204ENST00000368210 RAPGEF2Q9Y4G8 1499 aa17.54■□□□□ 0.4
PTPRK-204ENST00000368210 UPF2Q9HAU5 1272 aaKnown RBP17.53■□□□□ 0.4
PTPRK-204ENST00000368210 FMN1Q68DA7 1419 aa17.53■□□□□ 0.4
PTPRK-204ENST00000368210 CDCA8Q53HL2 280 aa17.53■□□□□ 0.4
PTPRK-204ENST00000368210 RUSC2Q8N2Y8 1516 aa17.51■□□□□ 0.39
PTPRK-204ENST00000368210 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
PTPRK-204ENST00000368210 SENP3Q9H4L4 574 aaPredicted RBP17.5■□□□□ 0.39
PTPRK-204ENST00000368210 KNSTRNQ9Y448 316 aa17.5■□□□□ 0.39
PTPRK-204ENST00000368210 SUPT16HQ9Y5B9 1047 aaKnown RBP17.5■□□□□ 0.39
PTPRK-204ENST00000368210 SENP3-EIF4A1A0A087X0R7 540 aa17.49■□□□□ 0.39
PTPRK-204ENST00000368210 PPP1R15AO75807 674 aaPredicted RBP17.46■□□□□ 0.39
PTPRK-204ENST00000368210 DCAF11Q8TEB1 546 aa17.45■□□□□ 0.38
PTPRK-204ENST00000368210 HSP90AA1P07900 732 aaKnown RBP17.43■□□□□ 0.38
PTPRK-204ENST00000368210 CARMIL2Q6F5E8 1435 aa17.43■□□□□ 0.38
PTPRK-204ENST00000368210 FHOD3Q2V2M9 1422 aa17.43■□□□□ 0.38
PTPRK-204ENST00000368210 PPM1GO15355 546 aaPredicted RBP17.4■□□□□ 0.38
PTPRK-204ENST00000368210 FOXD1Q16676 465 aa17.4■□□□□ 0.38
PTPRK-204ENST00000368210 PKD2Q13563 968 aa17.4■□□□□ 0.38
PTPRK-204ENST00000368210 HSPA5P11021 654 aaKnown RBP17.4■□□□□ 0.38
PTPRK-204ENST00000368210 CFAP53Q96M91 514 aa17.4■□□□□ 0.38
PTPRK-204ENST00000368210 CCER2I3L3R5 266 aa17.39■□□□□ 0.37
PTPRK-204ENST00000368210 NAP1L5Q96NT1 182 aaPredicted RBP17.39■□□□□ 0.37
PTPRK-204ENST00000368210 MPHOSPH9Q99550 1183 aa17.38■□□□□ 0.37
PTPRK-204ENST00000368210 NOP58Q9Y2X3 529 aaKnown RBP17.38■□□□□ 0.37
PTPRK-204ENST00000368210 NCLP19338 710 aaKnown RBP17.37■□□□□ 0.37
PTPRK-204ENST00000368210 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.34■□□□□ 0.37
PTPRK-204ENST00000368210 TMF1P82094 1093 aa17.34■□□□□ 0.37
PTPRK-204ENST00000368210 CC2D1BQ5T0F9 858 aaKnown RBP17.33■□□□□ 0.37
PTPRK-204ENST00000368210 RBM19Q9Y4C8 960 aaKnown RBP17.33■□□□□ 0.36
PTPRK-204ENST00000368210 CDK11BP21127 795 aaKnown RBP17.33■□□□□ 0.36
PTPRK-204ENST00000368210 FANCD2Q9BXW9 1451 aa17.32■□□□□ 0.36
PTPRK-204ENST00000368210 DDRGK1Q96HY6 314 aa17.32■□□□□ 0.36
PTPRK-204ENST00000368210 PPP4R2Q9NY27 417 aa17.32■□□□□ 0.36
PTPRK-204ENST00000368210 TRIM44Q96DX7 344 aaPredicted RBP17.31■□□□□ 0.36
PTPRK-204ENST00000368210 KANK1Q14678 1352 aa17.31■□□□□ 0.36
PTPRK-204ENST00000368210 NUP155O75694 1391 aa17.3■□□□□ 0.36
PTPRK-204ENST00000368210 ARID4BQ4LE39 1312 aaPredicted RBP17.29■□□□□ 0.36
PTPRK-204ENST00000368210 ANKRD30AQ9BXX3 1397 aa17.29■□□□□ 0.36
PTPRK-204ENST00000368210 NEUROD2Q15784 382 aa17.29■□□□□ 0.36
PTPRK-204ENST00000368210 MYH16Q9H6N6 1097 aa17.29■□□□□ 0.36
PTPRK-204ENST00000368210 TSHZ2Q9NRE2 1034 aa17.28■□□□□ 0.36
PTPRK-204ENST00000368210 POGKQ9P215 609 aa17.28■□□□□ 0.36
PTPRK-204ENST00000368210 DHX57Q6P158 1386 aaKnown RBP17.27■□□□□ 0.36
PTPRK-204ENST00000368210 EFCAB2Q5VUJ9 269 aa17.26■□□□□ 0.35
PTPRK-204ENST00000368210 ARXQ96QS3 562 aa17.26■□□□□ 0.35
PTPRK-204ENST00000368210 L3MBTL2Q969R5 705 aa17.25■□□□□ 0.35
PTPRK-204ENST00000368210 IGF1RP08069 1367 aa17.25■□□□□ 0.35
PTPRK-204ENST00000368210 JPH4Q96JJ6 628 aa17.24■□□□□ 0.35
PTPRK-204ENST00000368210 NUDCQ9Y266 331 aa17.24■□□□□ 0.35
PTPRK-204ENST00000368210 C14orf37Q86TY3 774 aa17.24■□□□□ 0.35
PTPRK-204ENST00000368210 CCDC18Q5T9S5 1454 aa17.24■□□□□ 0.35
PTPRK-204ENST00000368210 MAPK8IP3Q9UPT6 1336 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms