RNA–Protein interactions for RNA: ENST00000367142.4

NUCKS1-201, Transcript of nuclear casein kinase and cyclin dependent kinase substrate 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUCKS1, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1-201ENST00000367142 SCRIBQ14160 1630 aa20.77■□□□□ 0.91
NUCKS1-201ENST00000367142 ARXQ96QS3 562 aa20.75■□□□□ 0.91
NUCKS1-201ENST00000367142 SENP3Q9H4L4 574 aaPredicted RBP20.72■□□□□ 0.91
NUCKS1-201ENST00000367142 CFAP53Q96M91 514 aa20.7■□□□□ 0.9
NUCKS1-201ENST00000367142 KCNH8Q96L42 1107 aa20.7■□□□□ 0.9
NUCKS1-201ENST00000367142 ZRSR1Q15695 479 aaKnown RBP20.68■□□□□ 0.9
NUCKS1-201ENST00000367142 BECN1Q14457 450 aa20.66■□□□□ 0.9
NUCKS1-201ENST00000367142 NPHP1O15259 732 aa20.65■□□□□ 0.9
NUCKS1-201ENST00000367142 CASC1Q6TDU7 716 aa20.65■□□□□ 0.9
NUCKS1-201ENST00000367142 GOLGA6L22H0YM25 854 aa20.63■□□□□ 0.89
NUCKS1-201ENST00000367142 PLEKHD1A6NEE1 506 aa20.63■□□□□ 0.89
NUCKS1-201ENST00000367142 NBR1Q14596 966 aa20.62■□□□□ 0.89
NUCKS1-201ENST00000367142 CDCA8Q53HL2 280 aa20.61■□□□□ 0.89
NUCKS1-201ENST00000367142 EIF4G2P78344 907 aaKnown RBP eCLIP20.6■□□□□ 0.897e-8■■■■■ 36.5
NUCKS1-201ENST00000367142 TULP1O00294 542 aaPredicted RBP20.6■□□□□ 0.89
NUCKS1-201ENST00000367142 DDRGK1Q96HY6 314 aa20.59■□□□□ 0.89
NUCKS1-201ENST00000367142 ANP32EQ9BTT0 268 aa20.56■□□□□ 0.88
NUCKS1-201ENST00000367142 PPM1GO15355 546 aaPredicted RBP20.56■□□□□ 0.88
NUCKS1-201ENST00000367142 RSF1Q96T23 1441 aaPredicted RBP20.55■□□□□ 0.88
NUCKS1-201ENST00000367142 RRP7BPQ9NSQ0 103 aa20.55■□□□□ 0.88
NUCKS1-201ENST00000367142 LMOD2Q6P5Q4 547 aa20.55■□□□□ 0.88
NUCKS1-201ENST00000367142 TRIM44Q96DX7 344 aaPredicted RBP20.53■□□□□ 0.88
NUCKS1-201ENST00000367142 KNSTRNQ9Y448 316 aa20.52■□□□□ 0.88
NUCKS1-201ENST00000367142 MAPK8IP3Q9UPT6 1336 aa20.51■□□□□ 0.87
NUCKS1-201ENST00000367142 RGL3Q3MIN7 710 aa20.5■□□□□ 0.87
NUCKS1-201ENST00000367142 FTSJ3Q8IY81 847 aaKnown RBP20.5■□□□□ 0.87
NUCKS1-201ENST00000367142 POGKQ9P215 609 aa20.48■□□□□ 0.87
NUCKS1-201ENST00000367142 NUDCQ9Y266 331 aa20.47■□□□□ 0.87
NUCKS1-201ENST00000367142 PTMAP06454 111 aaKnown RBP20.46■□□□□ 0.87
NUCKS1-201ENST00000367142 LAS1LQ9Y4W2 734 aaKnown RBP20.45■□□□□ 0.86
NUCKS1-201ENST00000367142 IRX6P78412 446 aaPredicted RBP20.45■□□□□ 0.86
NUCKS1-201ENST00000367142 GOLGA2Q08379 1002 aa20.44■□□□□ 0.86
NUCKS1-201ENST00000367142 OS9Q13438 667 aaPredicted RBP20.41■□□□□ 0.86
NUCKS1-201ENST00000367142 CHMP4BQ9H444 224 aaKnown RBP20.41■□□□□ 0.86
NUCKS1-201ENST00000367142 CFDP1Q9UEE9 299 aaPredicted RBP20.4■□□□□ 0.86
NUCKS1-201ENST00000367142 CLIP1P30622 1438 aa20.39■□□□□ 0.86
NUCKS1-201ENST00000367142 HIRIP3Q9BW71 556 aaPredicted RBP20.39■□□□□ 0.85
NUCKS1-201ENST00000367142 TPRNQ4KMQ1 711 aa20.38■□□□□ 0.85
NUCKS1-201ENST00000367142 GOLGA6L6A8MZA4 724 aa20.37■□□□□ 0.85
NUCKS1-201ENST00000367142 FGD1P98174 961 aa20.37■□□□□ 0.85
NUCKS1-201ENST00000367142 CARD11Q9BXL7 1154 aa20.36■□□□□ 0.85
NUCKS1-201ENST00000367142 PNNQ9H307 717 aaKnown RBP20.35■□□□□ 0.85
NUCKS1-201ENST00000367142 TAOK2Q9UL54 1235 aa20.35■□□□□ 0.85
NUCKS1-201ENST00000367142 HDGFP51858 240 aaKnown RBP20.34■□□□□ 0.85
NUCKS1-201ENST00000367142 NEUROD2Q15784 382 aa20.33■□□□□ 0.85
NUCKS1-201ENST00000367142 DNTTIP2Q5QJE6 756 aaKnown RBP20.33■□□□□ 0.84
NUCKS1-201ENST00000367142 MS4A1P11836 297 aa20.31■□□□□ 0.84
NUCKS1-201ENST00000367142 KCNJ4P48050 445 aa20.3■□□□□ 0.84
NUCKS1-201ENST00000367142 TRHP20396 242 aaPredicted RBP20.3■□□□□ 0.84
NUCKS1-201ENST00000367142 TNNT2P45379 298 aaPredicted RBP20.3■□□□□ 0.84
NUCKS1-201ENST00000367142 DCAF1Q9Y4B6 1507 aa20.3■□□□□ 0.84
NUCKS1-201ENST00000367142 ZCCHC6Q5VYS8 1495 aaKnown RBP20.29■□□□□ 0.84
NUCKS1-201ENST00000367142 NAP1L2Q9ULW6 460 aaPredicted RBP20.29■□□□□ 0.84
NUCKS1-201ENST00000367142 CLSTN1O94985 981 aa20.28■□□□□ 0.84
NUCKS1-201ENST00000367142 ERCC6Q03468 1493 aa20.26■□□□□ 0.83
NUCKS1-201ENST00000367142 NRDCO43847 1150 aa20.25■□□□□ 0.83
NUCKS1-201ENST00000367142 U2SURPO15042 1029 aaKnown RBP20.25■□□□□ 0.83
NUCKS1-201ENST00000367142 KANK1Q14678 1352 aa20.25■□□□□ 0.83
NUCKS1-201ENST00000367142 FRAT1Q92837 279 aaPredicted RBP20.23■□□□□ 0.83
NUCKS1-201ENST00000367142 PLCB2Q00722 1185 aa20.21■□□□□ 0.83
NUCKS1-201ENST00000367142 ISY1Q9ULR0 285 aaKnown RBP20.21■□□□□ 0.83
NUCKS1-201ENST00000367142 GOLGA3Q08378 1498 aa20.2■□□□□ 0.82
NUCKS1-201ENST00000367142 HSP90AB1P08238 724 aaKnown RBP20.2■□□□□ 0.82
NUCKS1-201ENST00000367142 MIER1Q8N108 512 aa20.19■□□□□ 0.82
NUCKS1-201ENST00000367142 NCBP3Q53F19 620 aaKnown RBP20.17■□□□□ 0.82
NUCKS1-201ENST00000367142 GOLGA6L4A6NEF3 574 aa20.17■□□□□ 0.82
NUCKS1-201ENST00000367142 EEA1Q15075 1411 aa20.16■□□□□ 0.82
NUCKS1-201ENST00000367142 MLECQ14165 292 aa20.15■□□□□ 0.82
NUCKS1-201ENST00000367142 SENP3-EIF4A1A0A087X0R7 540 aa20.14■□□□□ 0.81
NUCKS1-201ENST00000367142 MCCP23508 829 aa20.14■□□□□ 0.81
NUCKS1-201ENST00000367142 CC2D1BQ5T0F9 858 aaKnown RBP20.14■□□□□ 0.81
NUCKS1-201ENST00000367142 RGS3P49796 1198 aa20.13■□□□□ 0.81
NUCKS1-201ENST00000367142 TMF1P82094 1093 aa20.13■□□□□ 0.81
NUCKS1-201ENST00000367142 SRPK2P78362 688 aaKnown RBP20.12■□□□□ 0.81
NUCKS1-201ENST00000367142 TMX4Q9H1E5 349 aaPredicted RBP20.12■□□□□ 0.81
NUCKS1-201ENST00000367142 RTF1Q92541 710 aaKnown RBP20.12■□□□□ 0.81
NUCKS1-201ENST00000367142 SOX12O15370 315 aa20.12■□□□□ 0.81
NUCKS1-201ENST00000367142 KIF27Q86VH2 1401 aa20.11■□□□□ 0.81
NUCKS1-201ENST00000367142 RB1CC1Q8TDY2 1594 aa20.11■□□□□ 0.81
NUCKS1-201ENST00000367142 CCNB3Q8WWL7 1395 aa20.11■□□□□ 0.81
NUCKS1-201ENST00000367142 L1TD1Q5T7N2 865 aaKnown RBP20.09■□□□□ 0.81
NUCKS1-201ENST00000367142 CFAP44Q96MT7 982 aa20.08■□□□□ 0.8
NUCKS1-201ENST00000367142 GNL2Q13823 731 aaKnown RBP20.08■□□□□ 0.8
NUCKS1-201ENST00000367142 ERICH6BQ5W0A0 696 aa20.06■□□□□ 0.8
NUCKS1-201ENST00000367142 HSCBQ8IWL3 235 aa20.05■□□□□ 0.8
NUCKS1-201ENST00000367142 MORC1Q86VD1 984 aa20.05■□□□□ 0.8
NUCKS1-201ENST00000367142 BAZ1BQ9UIG0 1483 aaKnown RBP20.04■□□□□ 0.8
NUCKS1-201ENST00000367142 CSB-PGBD3P0DP91 1061 aa20.04■□□□□ 0.8
NUCKS1-201ENST00000367142 SUPT16HQ9Y5B9 1047 aaKnown RBP20.03■□□□□ 0.8
NUCKS1-201ENST00000367142 CEP162Q5TB80 1403 aa20.03■□□□□ 0.8
NUCKS1-201ENST00000367142 HDGFL2Q7Z4V5 671 aaPredicted RBP20.03■□□□□ 0.8
NUCKS1-201ENST00000367142 CHAF1AQ13111 956 aaPredicted RBP20.01■□□□□ 0.79
NUCKS1-201ENST00000367142 WRNQ14191 1432 aaPredicted RBP eCLIP20■□□□□ 0.79
NUCKS1-201ENST00000367142 KIAA2012Q0VF49 1180 aa20■□□□□ 0.79
NUCKS1-201ENST00000367142 NAP1L5Q96NT1 182 aaPredicted RBP20■□□□□ 0.79
NUCKS1-201ENST00000367142 DCAF11Q8TEB1 546 aa19.99■□□□□ 0.79
NUCKS1-201ENST00000367142 PPP4R2Q9NY27 417 aa19.99■□□□□ 0.79
NUCKS1-201ENST00000367142 PAK3O75914 559 aaPredicted RBP19.98■□□□□ 0.79
NUCKS1-201ENST00000367142 SAFB2Q14151 953 aaKnown RBP eCLIP19.98■□□□□ 0.79
NUCKS1-201ENST00000367142 ZNF330Q9Y3S2 320 aaPredicted RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms