RNA–Protein interactions for RNA: ENST00000360642.7

CLCN3-202, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2 BASIC

Gene CLCN3, Length 3,208 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-202ENST00000360642 GTF3C3Q9Y5Q9 886 aa11.93□□□□□ -0.5
CLCN3-202ENST00000360642 CECR2Q9BXF3 1484 aa11.9□□□□□ -0.51
CLCN3-202ENST00000360642 MROH2BQ7Z745 1585 aa11.86□□□□□ -0.51
CLCN3-202ENST00000360642 TRIM41Q8WV44 630 aa11.86□□□□□ -0.51
CLCN3-202ENST00000360642 LOC105371045A0A1W2PR82 267 aa11.84□□□□□ -0.51
CLCN3-202ENST00000360642 SSUH2Q9Y2M2 353 aa11.83□□□□□ -0.52
CLCN3-202ENST00000360642 STK25O00506 426 aa11.83□□□□□ -0.52
CLCN3-202ENST00000360642 GTPBP6O43824 516 aaPredicted RBP11.82□□□□□ -0.52
CLCN3-202ENST00000360642 HS6ST3Q8IZP7 471 aa11.82□□□□□ -0.52
CLCN3-202ENST00000360642 STAG3Q9UJ98 1225 aa11.81□□□□□ -0.52
CLCN3-202ENST00000360642 DSG3P32926 999 aa11.8□□□□□ -0.52
CLCN3-202ENST00000360642 DNAJC5Q9H3Z4 198 aa11.79□□□□□ -0.52
CLCN3-202ENST00000360642 WIZO95785 1651 aa11.79□□□□□ -0.52
CLCN3-202ENST00000360642 ZBTB12Q9Y330 459 aaPredicted RBP11.76□□□□□ -0.53
CLCN3-202ENST00000360642 BAZ1AQ9NRL2 1556 aaPredicted RBP11.75□□□□□ -0.53
CLCN3-202ENST00000360642 SPDYE2BA6NHP3 402 aa11.75□□□□□ -0.53
CLCN3-202ENST00000360642 SPDYE6P0CI01 402 aa11.75□□□□□ -0.53
CLCN3-202ENST00000360642 HRCP23327 699 aa11.75□□□□□ -0.53
CLCN3-202ENST00000360642 SPDYE2Q495Y8 402 aa11.75□□□□□ -0.53
CLCN3-202ENST00000360642 PCGF6Q9BYE7 350 aa11.74□□□□□ -0.53
CLCN3-202ENST00000360642 DCAF8Q5TAQ9 597 aa11.72□□□□□ -0.53
CLCN3-202ENST00000360642 UNC13AQ9UPW8 1703 aa11.71□□□□□ -0.53
CLCN3-202ENST00000360642 BCL11BQ9C0K0 894 aaPredicted RBP11.69□□□□□ -0.54
CLCN3-202ENST00000360642 TMEM132AQ24JP5 1023 aa11.68□□□□□ -0.54
CLCN3-202ENST00000360642 STK24Q9Y6E0 443 aa11.68□□□□□ -0.54
CLCN3-202ENST00000360642 EIF4G1Q04637 1599 aaKnown RBP11.67□□□□□ -0.54
CLCN3-202ENST00000360642 SMARCA4P51532 1647 aa11.66□□□□□ -0.54
CLCN3-202ENST00000360642 PYGBP11216 843 aa11.65□□□□□ -0.54
CLCN3-202ENST00000360642 PLEKHG5O94827 1062 aa11.65□□□□□ -0.54
CLCN3-202ENST00000360642 C1QBPQ07021 282 aaKnown RBP11.65□□□□□ -0.54
CLCN3-202ENST00000360642 CADPS2Q86UW7 1296 aa11.65□□□□□ -0.54
CLCN3-202ENST00000360642 RIOK3O14730 519 aaKnown RBP11.65□□□□□ -0.54
CLCN3-202ENST00000360642 C14orf37Q86TY3 774 aa11.65□□□□□ -0.54
CLCN3-202ENST00000360642 NUBP1P53384 320 aa11.64□□□□□ -0.55
CLCN3-202ENST00000360642 TOP2AP11388 1531 aaKnown RBP11.64□□□□□ -0.55
CLCN3-202ENST00000360642 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.64□□□□□ -0.55
CLCN3-202ENST00000360642 KCNV2Q8TDN2 545 aa11.64□□□□□ -0.55
CLCN3-202ENST00000360642 ZFP91Q96JP5 570 aaPredicted RBP11.64□□□□□ -0.55
CLCN3-202ENST00000360642 TRIM26Q12899 539 aaPredicted RBP11.6□□□□□ -0.55
CLCN3-202ENST00000360642 RASEFQ8IZ41 740 aa11.6□□□□□ -0.55
CLCN3-202ENST00000360642 CLEC11AQ9Y240 323 aa11.59□□□□□ -0.55
CLCN3-202ENST00000360642 BICRAQ9NZM4 1560 aa11.58□□□□□ -0.56
CLCN3-202ENST00000360642 FAM9AQ8IZU1 332 aaPredicted RBP11.58□□□□□ -0.56
CLCN3-202ENST00000360642 CCDC88BA6NC98 1476 aa11.57□□□□□ -0.56
CLCN3-202ENST00000360642 SMARCA2P51531 1590 aa11.57□□□□□ -0.56
CLCN3-202ENST00000360642 ZBTB47Q9UFB7 747 aaPredicted RBP11.56□□□□□ -0.56
CLCN3-202ENST00000360642 LMOD2Q6P5Q4 547 aa11.56□□□□□ -0.56
CLCN3-202ENST00000360642 BRPF1P55201 1214 aaPredicted RBP11.52□□□□□ -0.56
CLCN3-202ENST00000360642 PEG3Q9GZU2 1588 aa11.5□□□□□ -0.57
CLCN3-202ENST00000360642 GSE1Q14687 1217 aa11.49□□□□□ -0.57
CLCN3-202ENST00000360642 PPARGC1BQ86YN6 1023 aaKnown RBP11.48□□□□□ -0.57
CLCN3-202ENST00000360642 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.48□□□□□ -0.57
CLCN3-202ENST00000360642 DAXXQ9UER7 740 aaPredicted RBP11.47□□□□□ -0.57
CLCN3-202ENST00000360642 ABCC8Q09428 1581 aa11.47□□□□□ -0.57
CLCN3-202ENST00000360642 ARXQ96QS3 562 aa11.46□□□□□ -0.57
CLCN3-202ENST00000360642 MNX1P50219 401 aaPredicted RBP11.46□□□□□ -0.58
CLCN3-202ENST00000360642 FAM212AQ96EL1 285 aa11.46□□□□□ -0.58
CLCN3-202ENST00000360642 VGFO15240 615 aaPredicted RBP11.45□□□□□ -0.58
CLCN3-202ENST00000360642 NEUROD2Q15784 382 aa11.44□□□□□ -0.58
CLCN3-202ENST00000360642 SLC24A3Q9HC58 644 aa11.44□□□□□ -0.58
CLCN3-202ENST00000360642 SEMA3EO15041 775 aa11.44□□□□□ -0.58
CLCN3-202ENST00000360642 CREBZFQ9NS37 354 aa11.41□□□□□ -0.58
CLCN3-202ENST00000360642 PCDHB8Q9UN66 801 aa11.38□□□□□ -0.59
CLCN3-202ENST00000360642 PCDHB13Q9Y5F0 798 aa11.38□□□□□ -0.59
CLCN3-202ENST00000360642 ATAD2BQ9ULI0 1458 aa11.38□□□□□ -0.59
CLCN3-202ENST00000360642 PPP1R37O75864 691 aa11.37□□□□□ -0.59
CLCN3-202ENST00000360642 TSPYL2Q9H2G4 693 aaPredicted RBP11.37□□□□□ -0.59
CLCN3-202ENST00000360642 WDR70Q9NW82 654 aa11.36□□□□□ -0.59
CLCN3-202ENST00000360642 SOGA1O94964 1423 aa11.36□□□□□ -0.59
CLCN3-202ENST00000360642 EEA1Q15075 1411 aa11.35□□□□□ -0.59
CLCN3-202ENST00000360642 HOMEZQ8IX15 550 aa11.35□□□□□ -0.59
CLCN3-202ENST00000360642 PRR29P0C7W0 189 aa11.34□□□□□ -0.59
CLCN3-202ENST00000360642 ZC3H15Q8WU90 426 aaKnown RBP11.34□□□□□ -0.59
CLCN3-202ENST00000360642 GPBP1L1Q9HC44 474 aaPredicted RBP11.33□□□□□ -0.59
CLCN3-202ENST00000360642 CHADLQ6NUI6 762 aa11.33□□□□□ -0.6
CLCN3-202ENST00000360642 ZEB1P37275 1124 aaPredicted RBP11.33□□□□□ -0.6
CLCN3-202ENST00000360642 P3H3Q8IVL6 736 aa11.32□□□□□ -0.6
CLCN3-202ENST00000360642 UBTFP17480 764 aaKnown RBP11.32□□□□□ -0.6
CLCN3-202ENST00000360642 WRNQ14191 1432 aaPredicted RBP eCLIP11.31□□□□□ -0.6
CLCN3-202ENST00000360642 BAZ1BQ9UIG0 1483 aaKnown RBP11.31□□□□□ -0.6
CLCN3-202ENST00000360642 RUSC2Q8N2Y8 1516 aa11.3□□□□□ -0.6
CLCN3-202ENST00000360642 TNIKQ9UKE5 1360 aa11.3□□□□□ -0.6
CLCN3-202ENST00000360642 MFRPQ9BY79 579 aa11.29□□□□□ -0.6
CLCN3-202ENST00000360642 CEP162Q5TB80 1403 aa11.28□□□□□ -0.6
CLCN3-202ENST00000360642 SYNJ1O43426 1573 aa11.27□□□□□ -0.61
CLCN3-202ENST00000360642 ARID3AQ99856 593 aa11.27□□□□□ -0.61
CLCN3-202ENST00000360642 PODXL2Q9NZ53 605 aa11.24□□□□□ -0.61
CLCN3-202ENST00000360642 GOLGA3Q08378 1498 aa11.23□□□□□ -0.61
CLCN3-202ENST00000360642 IL27Q8NEV9 243 aa11.21□□□□□ -0.62
CLCN3-202ENST00000360642 TTBK1Q5TCY1 1321 aaPredicted RBP11.21□□□□□ -0.62
CLCN3-202ENST00000360642 SPDYE1Q8NFV5 336 aaPredicted RBP11.2□□□□□ -0.62
CLCN3-202ENST00000360642 KIF21BO75037 1637 aa11.2□□□□□ -0.62
CLCN3-202ENST00000360642 NCAPD3P42695 1498 aa11.2□□□□□ -0.62
CLCN3-202ENST00000360642 HMGXB3Q12766 1538 aa11.19□□□□□ -0.62
CLCN3-202ENST00000360642 CEP164Q9UPV0 1460 aa11.19□□□□□ -0.62
CLCN3-202ENST00000360642 TOP2BQ02880 1626 aa11.17□□□□□ -0.62
CLCN3-202ENST00000360642 POTEDQ86YR6 584 aa11.16□□□□□ -0.62
CLCN3-202ENST00000360642 PHF8Q9UPP1 1060 aa11.16□□□□□ -0.62
CLCN3-202ENST00000360642 E2F4Q16254 413 aa11.16□□□□□ -0.62
CLCN3-202ENST00000360642 REM2Q8IYK8 340 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms