RNA–Protein interactions for RNA: ENST00000360439.8

SIN3A-201, Transcript of SIN3 transcription regulator family member A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SIN3A, Length 5,050 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIN3A-201ENST00000360439 SOGA1O94964 1423 aa13.94□□□□□ -0.18
SIN3A-201ENST00000360439 CUX2O14529 1486 aa13.94□□□□□ -0.18
SIN3A-201ENST00000360439 CC2D2AQ9P2K1 1620 aa13.93□□□□□ -0.18
SIN3A-201ENST00000360439 ESF1Q9H501 851 aaKnown RBP13.93□□□□□ -0.18
SIN3A-201ENST00000360439 NCAPD3P42695 1498 aa13.92□□□□□ -0.18
SIN3A-201ENST00000360439 FANCD2Q9BXW9 1451 aa13.89□□□□□ -0.19
SIN3A-201ENST00000360439 CLIP1P30622 1438 aa13.89□□□□□ -0.19
SIN3A-201ENST00000360439 NBR1Q14596 966 aa13.86□□□□□ -0.19
SIN3A-201ENST00000360439 POLR3GLQ9BT43 218 aa13.85□□□□□ -0.19
SIN3A-201ENST00000360439 CARMIL1Q5VZK9 1371 aa13.85□□□□□ -0.19
SIN3A-201ENST00000360439 PLEKHD1A6NEE1 506 aa13.85□□□□□ -0.19
SIN3A-201ENST00000360439 BICRAQ9NZM4 1560 aa13.84□□□□□ -0.19
SIN3A-201ENST00000360439 ABCC8Q09428 1581 aa13.84□□□□□ -0.19
SIN3A-201ENST00000360439 SALL2Q9Y467 1007 aaPredicted RBP13.83□□□□□ -0.2
SIN3A-201ENST00000360439 DEKP35659 375 aaKnown RBP13.79□□□□□ -0.2
SIN3A-201ENST00000360439 MTUS2Q5JR59 1369 aa13.79□□□□□ -0.2
SIN3A-201ENST00000360439 UBE2Q2Q8WVN8 375 aa13.79□□□□□ -0.2
SIN3A-201ENST00000360439 NESP48681 1621 aa13.78□□□□□ -0.2
SIN3A-201ENST00000360439 VSIG10Q8N0Z9 540 aa13.78□□□□□ -0.2
SIN3A-201ENST00000360439 OSCARQ8IYS5 282 aa13.78□□□□□ -0.2
SIN3A-201ENST00000360439 PDE4CQ08493 712 aa13.76□□□□□ -0.21
SIN3A-201ENST00000360439 CHIC2Q9UKJ5 165 aa13.75□□□□□ -0.21
SIN3A-201ENST00000360439 SLC4A1APQ9BWU0 796 aaKnown RBP13.75□□□□□ -0.21
SIN3A-201ENST00000360439 TSPY4P0CV99 314 aa13.74□□□□□ -0.21
SIN3A-201ENST00000360439 TSPY10P0CW01 314 aa13.74□□□□□ -0.21
SIN3A-201ENST00000360439 VPS8Q8N3P4 1428 aa13.73□□□□□ -0.21
SIN3A-201ENST00000360439 ZNF326Q5BKZ1 582 aaKnown RBP13.73□□□□□ -0.21
SIN3A-201ENST00000360439 CYB5RLQ6IPT4 315 aa13.73□□□□□ -0.21
SIN3A-201ENST00000360439 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.72□□□□□ -0.216e-7■■□□□ 12.5
SIN3A-201ENST00000360439 STAG3Q9UJ98 1225 aa13.71□□□□□ -0.21
SIN3A-201ENST00000360439 ARID4BQ4LE39 1312 aaPredicted RBP13.71□□□□□ -0.21
SIN3A-201ENST00000360439 CNGB1Q14028 1251 aaPredicted RBP13.7□□□□□ -0.22
SIN3A-201ENST00000360439 CHGAP10645 457 aaKnown RBP13.7□□□□□ -0.22
SIN3A-201ENST00000360439 JPH4Q96JJ6 628 aa13.67□□□□□ -0.22
SIN3A-201ENST00000360439 CARMIL2Q6F5E8 1435 aa13.66□□□□□ -0.22
SIN3A-201ENST00000360439 KIF21BO75037 1637 aa13.65□□□□□ -0.22
SIN3A-201ENST00000360439 RAD54L2Q9Y4B4 1467 aa13.64□□□□□ -0.23
SIN3A-201ENST00000360439 CFDP1Q9UEE9 299 aaPredicted RBP13.64□□□□□ -0.23
SIN3A-201ENST00000360439 HMGXB3Q12766 1538 aa13.63□□□□□ -0.23
SIN3A-201ENST00000360439 AQRO60306 1485 aaKnown RBP eCLIP13.62□□□□□ -0.235e-7■■■■■ 32.2
SIN3A-201ENST00000360439 AMER1Q5JTC6 1135 aaPredicted RBP13.62□□□□□ -0.23
SIN3A-201ENST00000360439 MIER1Q8N108 512 aa13.62□□□□□ -0.23
SIN3A-201ENST00000360439 FGD5Q6ZNL6 1462 aa13.61□□□□□ -0.23
SIN3A-201ENST00000360439 UNC13AQ9UPW8 1703 aa13.61□□□□□ -0.23
SIN3A-201ENST00000360439 CFTRP13569 1480 aa13.6□□□□□ -0.23
SIN3A-201ENST00000360439 TIMELESSQ9UNS1 1208 aa13.6□□□□□ -0.23
SIN3A-201ENST00000360439 MRC2Q9UBG0 1479 aa13.58□□□□□ -0.24
SIN3A-201ENST00000360439 PDIA4P13667 645 aaKnown RBP13.58□□□□□ -0.24
SIN3A-201ENST00000360439 ERICH6BQ5W0A0 696 aa13.57□□□□□ -0.24
SIN3A-201ENST00000360439 ANP32CO43423 234 aa13.57□□□□□ -0.24
SIN3A-201ENST00000360439 GAPVD1Q14C86 1478 aa13.57□□□□□ -0.24
SIN3A-201ENST00000360439 HAP1P54257 671 aaPredicted RBP13.55□□□□□ -0.24
SIN3A-201ENST00000360439 RRP7BPQ9NSQ0 103 aa13.55□□□□□ -0.24
SIN3A-201ENST00000360439 SENP3Q9H4L4 574 aaPredicted RBP13.53□□□□□ -0.24
SIN3A-201ENST00000360439 MLECQ14165 292 aa13.53□□□□□ -0.24
SIN3A-201ENST00000360439 RAPGEF2Q9Y4G8 1499 aa13.53□□□□□ -0.24
SIN3A-201ENST00000360439 TSHZ2Q9NRE2 1034 aa13.51□□□□□ -0.25
SIN3A-201ENST00000360439 FHAD1B1AJZ9 1412 aa13.49□□□□□ -0.25
SIN3A-201ENST00000360439 RUSC2Q8N2Y8 1516 aa13.49□□□□□ -0.25
SIN3A-201ENST00000360439 CCNB3Q8WWL7 1395 aa13.49□□□□□ -0.25
SIN3A-201ENST00000360439 ERICH3Q5RHP9 1530 aa13.48□□□□□ -0.25
SIN3A-201ENST00000360439 PTPRGP23470 1445 aa13.47□□□□□ -0.25
SIN3A-201ENST00000360439 IGF1RP08069 1367 aa13.46□□□□□ -0.26
SIN3A-201ENST00000360439 FKBP8Q14318 412 aa13.45□□□□□ -0.26
SIN3A-201ENST00000360439 TOPBP1Q92547 1522 aa13.45□□□□□ -0.26
SIN3A-201ENST00000360439 IFT140Q96RY7 1462 aa13.44□□□□□ -0.26
SIN3A-201ENST00000360439 PEG3Q9GZU2 1588 aa13.44□□□□□ -0.26
SIN3A-201ENST00000360439 KLHL34Q8N239 644 aa13.44□□□□□ -0.26
SIN3A-201ENST00000360439 TONSLQ96HA7 1378 aa13.43□□□□□ -0.26
SIN3A-201ENST00000360439 LAMC3Q9Y6N6 1575 aa13.43□□□□□ -0.26
SIN3A-201ENST00000360439 GRIN2BQ13224 1484 aa13.43□□□□□ -0.26
SIN3A-201ENST00000360439 FHOD3Q2V2M9 1422 aa13.42□□□□□ -0.26
SIN3A-201ENST00000360439 SYNJ1O43426 1573 aa13.42□□□□□ -0.26
SIN3A-201ENST00000360439 PPP1R15AO75807 674 aaPredicted RBP13.42□□□□□ -0.26
SIN3A-201ENST00000360439 EFCAB2Q5VUJ9 269 aa13.41□□□□□ -0.26
SIN3A-201ENST00000360439 FMN1Q68DA7 1419 aa13.4□□□□□ -0.27
SIN3A-201ENST00000360439 BCL11BQ9C0K0 894 aaPredicted RBP13.39□□□□□ -0.27
SIN3A-201ENST00000360439 POLA1P09884 1462 aaPredicted RBP13.39□□□□□ -0.27
SIN3A-201ENST00000360439 TOP2BQ02880 1626 aa13.39□□□□□ -0.27
SIN3A-201ENST00000360439 NAP1L5Q96NT1 182 aaPredicted RBP13.39□□□□□ -0.27
SIN3A-201ENST00000360439 KDM2AQ9Y2K7 1162 aa13.39□□□□□ -0.27
SIN3A-201ENST00000360439 FAM69CQ0P6D2 419 aa13.39□□□□□ -0.27
SIN3A-201ENST00000360439 AEBP2Q6ZN18 517 aaPredicted RBP13.39□□□□□ -0.27
SIN3A-201ENST00000360439 GGT6Q6P531 493 aa13.38□□□□□ -0.27
SIN3A-201ENST00000360439 DHX57Q6P158 1386 aaKnown RBP13.38□□□□□ -0.27
SIN3A-201ENST00000360439 RBM19Q9Y4C8 960 aaKnown RBP13.38□□□□□ -0.27
SIN3A-201ENST00000360439 SETD5Q9C0A6 1442 aa13.37□□□□□ -0.27
SIN3A-201ENST00000360439 SUPT16HQ9Y5B9 1047 aaKnown RBP13.36□□□□□ -0.27
SIN3A-201ENST00000360439 CDK11BP21127 795 aaKnown RBP13.36□□□□□ -0.27
SIN3A-201ENST00000360439 NEFMP07197 916 aa13.34□□□□□ -0.27
SIN3A-201ENST00000360439 ANP32AP39687 249 aaKnown RBP13.34□□□□□ -0.27
SIN3A-201ENST00000360439 RGL3Q3MIN7 710 aa13.34□□□□□ -0.27
SIN3A-201ENST00000360439 C14orf37Q86TY3 774 aa13.34□□□□□ -0.27
SIN3A-201ENST00000360439 ZMYND15Q9H091 742 aa13.34□□□□□ -0.27
SIN3A-201ENST00000360439 SNAPC4Q5SXM2 1469 aa13.33□□□□□ -0.28
SIN3A-201ENST00000360439 KANK4Q5T7N3 995 aaPredicted RBP13.32□□□□□ -0.28
SIN3A-201ENST00000360439 CUX1P39880 1505 aa13.32□□□□□ -0.28
SIN3A-201ENST00000360439 DDX10Q13206 875 aaKnown RBP13.32□□□□□ -0.28
SIN3A-201ENST00000360439 RRBP1Q9P2E9 1410 aaKnown RBP13.31□□□□□ -0.28
SIN3A-201ENST00000360439 DNMBPQ6XZF7 1577 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms