RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 PLCB2Q00722 1185 aa12.06□□□□□ -0.48
VPS13A-203ENST00000360280 AMER1Q5JTC6 1135 aaPredicted RBP12.06□□□□□ -0.48
VPS13A-203ENST00000360280 RTN4Q9NQC3 1192 aaKnown RBP12.06□□□□□ -0.48
VPS13A-203ENST00000360280 NOP58Q9Y2X3 529 aaKnown RBP12.05□□□□□ -0.48
VPS13A-203ENST00000360280 SCAF1Q9H7N4 1312 aaKnown RBP12.04□□□□□ -0.48
VPS13A-203ENST00000360280 CHGAP10645 457 aaKnown RBP12.04□□□□□ -0.48
VPS13A-203ENST00000360280 TNNT3P45378 269 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-203ENST00000360280 IRX6P78412 446 aaPredicted RBP12.03□□□□□ -0.48
VPS13A-203ENST00000360280 HSP90AB1P08238 724 aaKnown RBP12.02□□□□□ -0.48
VPS13A-203ENST00000360280 CHMP4BQ9H444 224 aaKnown RBP12.02□□□□□ -0.49
VPS13A-203ENST00000360280 PTMSP20962 102 aa12.01□□□□□ -0.49
VPS13A-203ENST00000360280 KIAA2012Q0VF49 1180 aa12.01□□□□□ -0.49
VPS13A-203ENST00000360280 DRC7Q8IY82 874 aa12□□□□□ -0.49
VPS13A-203ENST00000360280 GOLGA6L4A6NEF3 574 aa12□□□□□ -0.49
VPS13A-203ENST00000360280 TULP1O00294 542 aaPredicted RBP12□□□□□ -0.49
VPS13A-203ENST00000360280 TPRNQ4KMQ1 711 aa11.99□□□□□ -0.49
VPS13A-203ENST00000360280 NOC3LQ8WTT2 800 aaKnown RBP11.98□□□□□ -0.49
VPS13A-203ENST00000360280 USP35Q9P2H5 1018 aa11.98□□□□□ -0.49
VPS13A-203ENST00000360280 FGD1P98174 961 aa11.97□□□□□ -0.49
VPS13A-203ENST00000360280 CFAP53Q96M91 514 aa11.97□□□□□ -0.49
VPS13A-203ENST00000360280 GOLGA6L1Q8N7Z2 621 aa11.96□□□□□ -0.49
VPS13A-203ENST00000360280 CFAP44Q96MT7 982 aa11.96□□□□□ -0.5
VPS13A-203ENST00000360280 HSCBQ8IWL3 235 aa11.96□□□□□ -0.5
VPS13A-203ENST00000360280 LAS1LQ9Y4W2 734 aaKnown RBP11.96□□□□□ -0.5
VPS13A-203ENST00000360280 ARID3CA6NKF2 412 aa11.95□□□□□ -0.5
VPS13A-203ENST00000360280 EIF4G2P78344 907 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS13A-203ENST00000360280 A0A0G2JS52 829 aa11.95□□□□□ -0.5
VPS13A-203ENST00000360280 P3H3Q8IVL6 736 aa11.94□□□□□ -0.5
VPS13A-203ENST00000360280 PNNQ9H307 717 aaKnown RBP11.94□□□□□ -0.5
VPS13A-203ENST00000360280 MS4A1P11836 297 aa11.93□□□□□ -0.5
VPS13A-203ENST00000360280 KCNJ4P48050 445 aa11.92□□□□□ -0.5
VPS13A-203ENST00000360280 CLSTN1O94985 981 aa11.92□□□□□ -0.5
VPS13A-203ENST00000360280 SETQ01105 290 aaPredicted RBP11.92□□□□□ -0.5
VPS13A-203ENST00000360280 MCCP23508 829 aa11.92□□□□□ -0.5
VPS13A-203ENST00000360280 CALRP27797 417 aaKnown RBP11.9□□□□□ -0.5
VPS13A-203ENST00000360280 CDCA8Q53HL2 280 aa11.9□□□□□ -0.5
VPS13A-203ENST00000360280 SYAP1Q96A49 352 aaPredicted RBP11.89□□□□□ -0.51
VPS13A-203ENST00000360280 KNSTRNQ9Y448 316 aa11.88□□□□□ -0.51
VPS13A-203ENST00000360280 PPP4R2Q9NY27 417 aa11.88□□□□□ -0.51
VPS13A-203ENST00000360280 MIER1Q8N108 512 aa11.88□□□□□ -0.51
VPS13A-203ENST00000360280 CSRNP3Q8WYN3 585 aa11.88□□□□□ -0.51
VPS13A-203ENST00000360280 MAPK8IP3Q9UPT6 1336 aa11.88□□□□□ -0.51
VPS13A-203ENST00000360280 A0A0U1RQG5 324 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-203ENST00000360280 GNL2Q13823 731 aaKnown RBP11.87□□□□□ -0.51
VPS13A-203ENST00000360280 NAP1L2Q9ULW6 460 aaPredicted RBP11.87□□□□□ -0.51
VPS13A-203ENST00000360280 KDM2AQ9Y2K7 1162 aa11.86□□□□□ -0.51
VPS13A-203ENST00000360280 MTUS2Q5JR59 1369 aa11.86□□□□□ -0.51
VPS13A-203ENST00000360280 DEKP35659 375 aaKnown RBP11.86□□□□□ -0.51
VPS13A-203ENST00000360280 GOLGA2Q08379 1002 aa11.86□□□□□ -0.51
VPS13A-203ENST00000360280 RGS3P49796 1198 aa11.86□□□□□ -0.51
VPS13A-203ENST00000360280 OS9Q13438 667 aaPredicted RBP11.86□□□□□ -0.51
VPS13A-203ENST00000360280 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.86□□□□□ -0.513e-6■□□□□ 10.8
VPS13A-203ENST00000360280 C14orf37Q86TY3 774 aa11.86□□□□□ -0.51
VPS13A-203ENST00000360280 GBP4Q96PP9 640 aa11.85□□□□□ -0.51
VPS13A-203ENST00000360280 NPM1P06748 294 aaKnown RBP eCLIP11.85□□□□□ -0.51
VPS13A-203ENST00000360280 HTATSF1O43719 755 aaKnown RBP11.85□□□□□ -0.51
VPS13A-203ENST00000360280 SUPT16HQ9Y5B9 1047 aaKnown RBP11.84□□□□□ -0.51
VPS13A-203ENST00000360280 ARID4BQ4LE39 1312 aaPredicted RBP11.84□□□□□ -0.51
VPS13A-203ENST00000360280 NCBP3Q53F19 620 aaKnown RBP11.84□□□□□ -0.51
VPS13A-203ENST00000360280 TAOK2Q9UL54 1235 aa11.83□□□□□ -0.52
VPS13A-203ENST00000360280 TPM4P67936 248 aa11.83□□□□□ -0.52
VPS13A-203ENST00000360280 TSPY4P0CV99 314 aa11.83□□□□□ -0.52
VPS13A-203ENST00000360280 TSPY10P0CW01 314 aa11.83□□□□□ -0.52
VPS13A-203ENST00000360280 ZBTB7CA1YPR0 619 aa11.83□□□□□ -0.52
VPS13A-203ENST00000360280 PLPPR3Q6T4P5 718 aa11.81□□□□□ -0.52
VPS13A-203ENST00000360280 PPP1R15AO75807 674 aaPredicted RBP11.81□□□□□ -0.52
VPS13A-203ENST00000360280 CCDC34Q96HJ3 373 aa11.81□□□□□ -0.52
VPS13A-203ENST00000360280 SCRIBQ14160 1630 aa11.81□□□□□ -0.52
VPS13A-203ENST00000360280 NPHP1O15259 732 aa11.8□□□□□ -0.52
VPS13A-203ENST00000360280 NUDCQ9Y266 331 aa11.79□□□□□ -0.52
VPS13A-203ENST00000360280 CHIC2Q9UKJ5 165 aa11.78□□□□□ -0.52
VPS13A-203ENST00000360280 RSF1Q96T23 1441 aaPredicted RBP11.78□□□□□ -0.52
VPS13A-203ENST00000360280 PHF14O94880 888 aa11.78□□□□□ -0.52
VPS13A-203ENST00000360280 HAP1P54257 671 aaPredicted RBP11.77□□□□□ -0.52
VPS13A-203ENST00000360280 FRAT1Q92837 279 aaPredicted RBP11.77□□□□□ -0.53
VPS13A-203ENST00000360280 ARID3AQ99856 593 aa11.77□□□□□ -0.53
VPS13A-203ENST00000360280 CSPP1Q1MSJ5 1256 aa11.75□□□□□ -0.53
VPS13A-203ENST00000360280 ABCC9O60706 1549 aa11.75□□□□□ -0.53
VPS13A-203ENST00000360280 HSP90AA2PQ14568 343 aaPredicted RBP11.75□□□□□ -0.53
VPS13A-203ENST00000360280 RSPH6AQ9H0K4 717 aa11.74□□□□□ -0.53
VPS13A-203ENST00000360280 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.74□□□□□ -0.53
VPS13A-203ENST00000360280 KIAA1211Q6ZU35 1233 aa11.74□□□□□ -0.53
VPS13A-203ENST00000360280 PRM3Q9NNZ6 103 aa11.73□□□□□ -0.53
VPS13A-203ENST00000360280 GOLGA6L3A6NEY3 463 aa11.73□□□□□ -0.53
VPS13A-203ENST00000360280 CLIP1P30622 1438 aa11.73□□□□□ -0.53
VPS13A-203ENST00000360280 GPS2Q13227 327 aa11.73□□□□□ -0.53
VPS13A-203ENST00000360280 CEP89Q96ST8 783 aa11.71□□□□□ -0.53
VPS13A-203ENST00000360280 TPM3P06753 285 aa11.71□□□□□ -0.54
VPS13A-203ENST00000360280 NEUROD2Q15784 382 aa11.7□□□□□ -0.54
VPS13A-203ENST00000360280 HIRIP3Q9BW71 556 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-203ENST00000360280 CCDC70Q6NSX1 233 aa11.7□□□□□ -0.54
VPS13A-203ENST00000360280 GZF1Q9H116 711 aaPredicted RBP11.69□□□□□ -0.54
VPS13A-203ENST00000360280 SPRYD3Q8NCJ5 442 aa11.68□□□□□ -0.54
VPS13A-203ENST00000360280 PABPN1Q86U42 306 aaKnown RBP eCLIP11.68□□□□□ -0.542e-6■□□□□ 9.6
VPS13A-203ENST00000360280 CARD11Q9BXL7 1154 aa11.67□□□□□ -0.54
VPS13A-203ENST00000360280 ZCCHC6Q5VYS8 1495 aaKnown RBP11.66□□□□□ -0.54
VPS13A-203ENST00000360280 GOLGA3Q08378 1498 aa11.66□□□□□ -0.54
VPS13A-203ENST00000360280 ISY1Q9ULR0 285 aaKnown RBP11.66□□□□□ -0.54
VPS13A-203ENST00000360280 B4GALNT3Q6L9W6 998 aa11.66□□□□□ -0.54
VPS13A-203ENST00000360280 PLEKHG5O94827 1062 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms