RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 PBRM1Q86U86 1689 aa14.07□□□□□ -0.16
UPF2-202ENST00000357604 JPH4Q96JJ6 628 aa14.06□□□□□ -0.16
UPF2-202ENST00000357604 GRIN2AQ12879 1464 aa14.06□□□□□ -0.16
UPF2-202ENST00000357604 TNIKQ9UKE5 1360 aa14.03□□□□□ -0.16
UPF2-202ENST00000357604 ADAMTS12P58397 1594 aa14.02□□□□□ -0.16
UPF2-202ENST00000357604 TARBP1Q13395 1621 aaKnown RBP14.02□□□□□ -0.16
UPF2-202ENST00000357604 TRHP20396 242 aaPredicted RBP14.02□□□□□ -0.17
UPF2-202ENST00000357604 CLIP1P30622 1438 aa14.02□□□□□ -0.17
UPF2-202ENST00000357604 PLEKHD1A6NEE1 506 aa14□□□□□ -0.17
UPF2-202ENST00000357604 PTPRGP23470 1445 aa14□□□□□ -0.17
UPF2-202ENST00000357604 KIAA0586Q9BVV6 1533 aa13.99□□□□□ -0.17
UPF2-202ENST00000357604 ABCA5Q8WWZ7 1642 aa13.99□□□□□ -0.17
UPF2-202ENST00000357604 FMN1Q68DA7 1419 aa13.98□□□□□ -0.17
UPF2-202ENST00000357604 PRG4Q92954 1404 aaPredicted RBP13.98□□□□□ -0.17
UPF2-202ENST00000357604 KIF21BO75037 1637 aa13.98□□□□□ -0.17
UPF2-202ENST00000357604 CYB5RLQ6IPT4 315 aa13.94□□□□□ -0.18
UPF2-202ENST00000357604 IQGAP2Q13576 1575 aa13.94□□□□□ -0.18
UPF2-202ENST00000357604 LOC105371045A0A1W2PR82 267 aa13.94□□□□□ -0.18
UPF2-202ENST00000357604 ARID3CA6NKF2 412 aa13.93□□□□□ -0.18
UPF2-202ENST00000357604 EFCAB5A4FU69 1503 aa13.92□□□□□ -0.18
UPF2-202ENST00000357604 CEP162Q5TB80 1403 aa13.88□□□□□ -0.19
UPF2-202ENST00000357604 MTUS2Q5JR59 1369 aa13.88□□□□□ -0.19
UPF2-202ENST00000357604 PRXQ9BXM0 1461 aa13.87□□□□□ -0.19
UPF2-202ENST00000357604 KCNH8Q96L42 1107 aa13.86□□□□□ -0.19
UPF2-202ENST00000357604 RUSC2Q8N2Y8 1516 aa13.86□□□□□ -0.19
UPF2-202ENST00000357604 CHD1O14646 1710 aa13.84□□□□□ -0.19
UPF2-202ENST00000357604 NUP160Q12769 1436 aa13.84□□□□□ -0.19
UPF2-202ENST00000357604 ESF1Q9H501 851 aaKnown RBP13.82□□□□□ -0.2
UPF2-202ENST00000357604 CCDC18Q5T9S5 1454 aa13.81□□□□□ -0.2
UPF2-202ENST00000357604 CTTNBP2Q8WZ74 1663 aa13.81□□□□□ -0.2
UPF2-202ENST00000357604 ZNF777Q9ULD5 760 aaPredicted RBP13.8□□□□□ -0.2
UPF2-202ENST00000357604 FHOD3Q2V2M9 1422 aa13.78□□□□□ -0.2
UPF2-202ENST00000357604 UACAQ9BZF9 1416 aa13.78□□□□□ -0.2
UPF2-202ENST00000357604 FAM50AQ14320 339 aaKnown RBP13.77□□□□□ -0.21
UPF2-202ENST00000357604 DNAJC5Q9H3Z4 198 aa13.77□□□□□ -0.21
UPF2-202ENST00000357604 HECW1Q76N89 1606 aa13.76□□□□□ -0.21
UPF2-202ENST00000357604 CEP170Q5SW79 1584 aa13.75□□□□□ -0.21
UPF2-202ENST00000357604 CCNB3Q8WWL7 1395 aa13.74□□□□□ -0.21
UPF2-202ENST00000357604 UGGT2Q9NYU1 1516 aa13.74□□□□□ -0.21
UPF2-202ENST00000357604 FAM69CQ0P6D2 419 aa13.71□□□□□ -0.22
UPF2-202ENST00000357604 PLB1Q6P1J6 1458 aa13.7□□□□□ -0.22
UPF2-202ENST00000357604 ACIN1Q9UKV3 1341 aaKnown RBP13.7□□□□□ -0.22
UPF2-202ENST00000357604 TSPY4P0CV99 314 aa13.69□□□□□ -0.22
UPF2-202ENST00000357604 TSPY10P0CW01 314 aa13.69□□□□□ -0.22
UPF2-202ENST00000357604 VPS8Q8N3P4 1428 aa13.69□□□□□ -0.22
UPF2-202ENST00000357604 KIAA0556O60303 1618 aa13.69□□□□□ -0.22
UPF2-202ENST00000357604 CFDP1Q9UEE9 299 aaPredicted RBP13.68□□□□□ -0.22
UPF2-202ENST00000357604 EFCAB2Q5VUJ9 269 aa13.68□□□□□ -0.22
UPF2-202ENST00000357604 FYCO1Q9BQS8 1478 aa13.67□□□□□ -0.22
UPF2-202ENST00000357604 CASKIN1Q8WXD9 1431 aa13.67□□□□□ -0.22
UPF2-202ENST00000357604 ARHGEF11O15085 1522 aa13.65□□□□□ -0.22
UPF2-202ENST00000357604 CLASP1Q7Z460 1538 aa13.64□□□□□ -0.23
UPF2-202ENST00000357604 ARID4BQ4LE39 1312 aaPredicted RBP13.64□□□□□ -0.23
UPF2-202ENST00000357604 ITGAEP38570 1179 aa13.63□□□□□ -0.23
UPF2-202ENST00000357604 ARHGAP35Q9NRY4 1499 aa13.62□□□□□ -0.23
UPF2-202ENST00000357604 TEX14Q8IWB6 1497 aa13.61□□□□□ -0.23
UPF2-202ENST00000357604 RAPGEF6Q8TEU7 1601 aa13.6□□□□□ -0.23
UPF2-202ENST00000357604 RSPH4AQ5TD94 716 aa13.6□□□□□ -0.23
UPF2-202ENST00000357604 ABCC2Q92887 1545 aa13.59□□□□□ -0.23
UPF2-202ENST00000357604 PPARGC1BQ86YN6 1023 aaKnown RBP13.57□□□□□ -0.24
UPF2-202ENST00000357604 RIMBP3CA6NJZ7 1639 aa13.57□□□□□ -0.24
UPF2-202ENST00000357604 RIMBP3BA6NNM3 1639 aa13.57□□□□□ -0.24
UPF2-202ENST00000357604 RIMBP3Q9UFD9 1639 aa13.57□□□□□ -0.24
UPF2-202ENST00000357604 UHRF1BP1LA0JNW5 1464 aa13.57□□□□□ -0.24
UPF2-202ENST00000357604 EHBP1L1Q8N3D4 1523 aa13.56□□□□□ -0.24
UPF2-202ENST00000357604 PLEKHH2Q8IVE3 1493 aa13.56□□□□□ -0.24
UPF2-202ENST00000357604 KIF14Q15058 1648 aa13.55□□□□□ -0.24
UPF2-202ENST00000357604 TRIM52Q96A61 297 aa13.54□□□□□ -0.24
UPF2-202ENST00000357604 PHLDB1Q86UU1 1377 aa13.54□□□□□ -0.24
UPF2-202ENST00000357604 WDR7Q9Y4E6 1490 aa13.53□□□□□ -0.24
UPF2-202ENST00000357604 KANK1Q14678 1352 aa13.52□□□□□ -0.25
UPF2-202ENST00000357604 ARHGAP5Q13017 1502 aa13.51□□□□□ -0.25
UPF2-202ENST00000357604 ASXL2Q76L83 1435 aa13.51□□□□□ -0.25
UPF2-202ENST00000357604 DISP1Q96F81 1524 aa13.51□□□□□ -0.25
UPF2-202ENST00000357604 TROQ12816 1431 aaPredicted RBP13.51□□□□□ -0.25
UPF2-202ENST00000357604 TRIM26Q12899 539 aaPredicted RBP13.51□□□□□ -0.25
UPF2-202ENST00000357604 EPRSP07814 1512 aaKnown RBP13.5□□□□□ -0.25
UPF2-202ENST00000357604 SHROOM2Q13796 1616 aa13.5□□□□□ -0.25
UPF2-202ENST00000357604 SAMD9Q5K651 1589 aa13.5□□□□□ -0.25
UPF2-202ENST00000357604 CD109Q6YHK3 1445 aa13.5□□□□□ -0.25
UPF2-202ENST00000357604 ARAP1Q96P48 1450 aa13.49□□□□□ -0.25
UPF2-202ENST00000357604 CFAP74Q9C0B2 1584 aa13.47□□□□□ -0.25
UPF2-202ENST00000357604 AEBP2Q6ZN18 517 aaPredicted RBP13.46□□□□□ -0.25
UPF2-202ENST00000357604 STAG3Q9UJ98 1225 aa13.46□□□□□ -0.26
UPF2-202ENST00000357604 PCF11O94913 1555 aaKnown RBP13.45□□□□□ -0.26
UPF2-202ENST00000357604 SPAG9O60271 1321 aaKnown RBP13.45□□□□□ -0.26
UPF2-202ENST00000357604 POGZQ7Z3K3 1410 aa13.45□□□□□ -0.26
UPF2-202ENST00000357604 SUPT6HQ7KZ85 1726 aaKnown RBP13.44□□□□□ -0.26
UPF2-202ENST00000357604 ANKRD30AQ9BXX3 1397 aa13.42□□□□□ -0.26
UPF2-202ENST00000357604 ABCA8O94911 1581 aa13.4□□□□□ -0.26
UPF2-202ENST00000357604 MAP3K1Q13233 1512 aa13.4□□□□□ -0.26
UPF2-202ENST00000357604 CDK13Q14004 1512 aaKnown RBP13.4□□□□□ -0.26
UPF2-202ENST00000357604 LRRC9Q6ZRR7 1453 aa13.39□□□□□ -0.27
UPF2-202ENST00000357604 PLPPR3Q6T4P5 718 aa13.39□□□□□ -0.27
UPF2-202ENST00000357604 ATP10BO94823 1461 aa13.39□□□□□ -0.27
UPF2-202ENST00000357604 TIAM1Q13009 1591 aa13.38□□□□□ -0.27
UPF2-202ENST00000357604 CHIC2Q9UKJ5 165 aa13.38□□□□□ -0.27
UPF2-202ENST00000357604 NUP153P49790 1475 aaKnown RBP13.37□□□□□ -0.27
UPF2-202ENST00000357604 BCANQ96GW7 911 aa13.37□□□□□ -0.27
UPF2-202ENST00000357604 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.37□□□□□ -0.275e-7■■■□□ 15.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms